Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48504 * 109.47384 * 240.00252 * 3 2 1 5 5 H 1.48498 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00153 * 3 2 1 7 7 C 1.39014 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.36909 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00138 * 179.97438 * 9 7 2 11 11 O 1.21633 * 119.99979 * 0.02562 * 10 9 7 12 12 C 1.47367 * 120.00001 * 180.27592 * 10 9 7 13 13 C 1.39898 * 120.20404 * 269.72658 * 12 10 9 14 14 Cl 1.73603 * 120.07000 * 0.02562 * 13 12 10 15 15 C 1.37951 * 119.86087 * 179.97438 * 13 12 10 16 16 C 1.38489 * 120.29544 * 0.02562 * 15 13 12 17 17 C 1.38121 * 120.41799 * 359.95460 * 16 15 13 18 18 C 1.38650 * 120.12981 * 359.78881 * 17 16 15 19 19 O 1.35658 * 120.14668 * 180.25411 * 18 17 16 20 20 C 1.42903 * 117.00317 * 0.22844 * 19 18 17 21 21 C 1.52991 * 109.47174 * 180.02562 * 20 19 18 22 22 C 1.53005 * 117.50055 * 243.62273 * 21 20 19 23 23 C 1.52999 * 60.00261 * 252.51209 * 22 21 20 24 24 H 0.97005 * 120.00014 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00126 * 0.02562 * 9 7 2 26 26 H 1.08006 * 119.84907 * 180.02562 * 15 13 12 27 27 H 1.07998 * 119.79462 * 179.97438 * 16 15 13 28 28 H 1.08007 * 119.93509 * 180.02562 * 17 16 15 29 29 H 1.09002 * 109.46945 * 300.00629 * 20 19 18 30 30 H 1.09007 * 109.46421 * 60.00196 * 20 19 18 31 31 H 1.08994 * 115.55215 * 29.33246 * 21 20 19 32 32 H 1.09000 * 117.49461 * 0.02562 * 22 21 20 33 33 H 1.08999 * 117.50037 * 145.01805 * 22 21 20 34 34 H 1.08993 * 117.49718 * 252.51177 * 23 22 21 35 35 H 1.09001 * 117.49941 * 107.48326 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1016 1.6965 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0089 -1.2039 -0.0005 8 1 3.0890 -1.2039 -0.0010 9 7 1.3244 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0016 11 8 3.2147 -3.5567 -0.0021 12 6 1.2615 -4.8330 -0.0077 13 6 0.9105 -5.4488 1.1984 14 17 1.3415 -4.7109 2.7095 15 6 0.2204 -6.6432 1.1844 16 6 -0.1262 -7.2357 -0.0184 17 6 0.2139 -6.6378 -1.2162 18 6 0.9029 -5.4347 -1.2225 19 8 1.2327 -4.8446 -2.3986 20 6 0.8341 -5.5159 -3.5955 21 6 1.2910 -4.7062 -4.8106 22 6 0.2072 -4.1374 -5.7287 23 6 1.0615 -5.3181 -6.1941 24 1 -0.4850 0.8401 0.0004 25 1 0.3544 -2.3896 -0.0005 26 1 -0.0509 -7.1183 2.1156 27 1 -0.6662 -8.1710 -0.0200 28 1 -0.0607 -7.1066 -2.1497 29 1 1.2902 -6.5054 -3.6262 30 1 -0.2513 -5.6154 -3.6119 31 1 2.1926 -4.1109 -4.6669 32 1 -0.8314 -4.3396 -5.4666 33 1 0.3956 -3.1674 -6.1889 34 1 1.8120 -5.1250 -6.9605 35 1 0.5851 -6.2975 -6.2385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896668172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -52.766809 kcal Electronic energy + Delta-G solvation = -21101.704515 eV Core-core repulsion = 17704.847338 eV Total energy + Delta-G solvation = -3396.857177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51566 -39.87823 -38.81674 -37.82831 -37.14129 -36.01694 -33.40419 -32.11368 -31.09998 -28.54737 -27.21688 -24.62686 -23.47033 -23.24296 -21.90181 -21.17048 -20.09639 -19.31357 -18.16919 -17.51860 -16.99532 -16.89347 -16.36046 -16.12188 -15.93539 -15.70672 -15.18017 -14.64059 -14.59516 -14.31069 -14.23539 -13.56718 -13.06542 -12.97866 -12.91489 -12.72183 -12.48505 -12.40532 -12.17151 -12.14692 -12.00733 -11.93932 -11.56398 -11.43445 -10.92123 -10.57252 -10.07793 -9.85706 -9.30557 -8.50463 -5.99507 -0.03589 0.24113 1.00583 1.35540 1.37493 1.49796 1.92710 2.10456 2.26612 2.51131 2.86199 3.11106 3.16407 3.66020 3.83138 3.90851 3.96315 4.06631 4.15107 4.19251 4.20456 4.34462 4.46498 4.55691 4.59861 4.74672 4.97457 5.10483 5.14039 5.15746 5.21839 5.25461 5.36131 5.58915 5.92417 6.37587 6.51010 7.04718 7.45791 8.00948 8.66958 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.006914 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.970296 B = 4048.589745 C = 6366.400137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.546 5.546 10 C 0.497 3.503 11 O -0.633 6.633 12 C -0.170 4.170 13 C 0.009 3.991 14 Cl -0.069 7.069 15 C -0.147 4.147 16 C -0.040 4.040 17 C -0.199 4.199 18 C 0.153 3.847 19 O -0.334 6.334 20 C 0.086 3.914 21 C -0.190 4.190 22 C -0.181 4.181 23 C -0.137 4.137 24 H 0.280 0.720 25 H 0.392 0.608 26 H 0.168 0.832 27 H 0.191 0.809 28 H 0.174 0.826 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 -16.209 -7.156 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.179 5.179 10 C 0.284 3.716 11 O -0.521 6.521 12 C -0.175 4.175 13 C -0.019 4.019 14 Cl -0.040 7.040 15 C -0.166 4.166 16 C -0.058 4.058 17 C -0.217 4.217 18 C 0.106 3.894 19 O -0.248 6.248 20 C 0.012 3.988 21 C -0.208 4.208 22 C -0.217 4.217 23 C -0.174 4.174 24 H 0.090 0.910 25 H 0.225 0.775 26 H 0.185 0.815 27 H 0.208 0.792 28 H 0.191 0.809 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.032 -15.764 -7.075 18.301 hybrid contribution 0.290 1.353 0.326 1.422 sum -5.741 -14.411 -6.749 16.917 Atomic orbital electron populations 1.69677 1.06971 1.29575 1.49323 1.26118 0.96565 1.02453 0.95756 0.84976 0.77863 0.76308 0.79084 1.19578 1.18895 1.19527 1.19640 0.92698 0.83821 1.50456 0.90352 1.41759 1.08896 1.04449 1.62834 1.17882 0.86869 0.83977 0.82838 1.90558 1.15436 1.87865 1.58276 1.19258 1.07217 0.98602 0.92435 1.20977 0.99997 0.95884 0.84998 1.98376 1.92063 1.83076 1.30469 1.21295 1.00374 0.93155 1.01747 1.21529 0.95171 0.99917 0.89198 1.21678 1.03322 0.94446 1.02291 1.19037 0.93800 0.92481 0.84112 1.86143 1.75164 1.50260 1.13189 1.22660 1.00414 0.95664 0.80017 1.22101 1.01897 1.05540 0.91281 1.23185 0.96725 0.99023 1.02806 1.23103 1.02338 0.98464 0.93509 0.91043 0.77496 0.81476 0.79201 0.80856 0.89274 0.89562 0.89659 0.87450 0.88965 0.87363 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.04 13.05 21.68 0.28 -51.76 16 2 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 3 Si 1.00 44.97 29.55 68.60 2.03 47.00 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.34 -20.68 9.68 84.09 0.81 -19.87 16 8 H 0.08 5.10 7.15 -2.91 -0.02 5.08 16 9 N -0.55 -31.71 5.28 -310.03 -1.64 -33.35 16 10 C 0.50 27.75 5.79 86.65 0.50 28.25 16 11 O -0.63 -40.43 16.68 -4.14 -0.07 -40.49 16 12 C -0.17 -7.51 5.64 -19.99 -0.11 -7.63 16 13 C 0.01 0.33 6.35 22.60 0.14 0.48 16 14 Cl -0.07 -2.70 28.04 -2.72 -0.08 -2.77 16 15 C -0.15 -3.70 9.81 22.26 0.22 -3.48 16 16 C -0.04 -0.77 10.03 22.30 0.22 -0.55 16 17 C -0.20 -4.69 9.03 22.34 0.20 -4.49 16 18 C 0.15 5.57 6.70 22.85 0.15 5.72 16 19 O -0.33 -12.89 9.59 -89.74 -0.86 -13.75 16 20 C 0.09 2.17 5.02 71.98 0.36 2.53 16 21 C -0.19 -4.83 6.06 -10.79 -0.07 -4.89 16 22 C -0.18 -3.79 10.18 30.60 0.31 -3.48 16 23 C -0.14 -2.26 10.25 30.60 0.31 -1.95 16 24 H 0.28 14.75 8.31 -92.70 -0.77 13.98 16 25 H 0.39 22.29 7.88 -92.71 -0.73 21.56 16 26 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 27 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 28 H 0.17 2.61 6.30 -2.91 -0.02 2.59 16 29 H 0.09 1.75 7.65 -2.39 -0.02 1.73 16 30 H 0.09 1.72 7.41 -2.38 -0.02 1.70 16 31 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.11 1.99 8.03 -2.39 -0.02 1.97 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -80.33 324.95 3.60 -76.72 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.40 Total: 27.77 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 3.53 Total: -9.37 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.35 Total: -85.10 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.93 Total: -54.25 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -0.08 Total: -2.77 kcal Total: -80.33 3.60 -76.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896668172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.957 kcal (2) G-P(sol) polarization free energy of solvation -80.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds