Wall clock time and date at job start Tue Mar 31 2020 07:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48494 * 109.47550 * 270.00078 * 3 2 1 5 5 H 1.48501 * 109.47411 * 30.00280 * 3 2 1 6 6 H 1.48504 * 109.46856 * 149.99810 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21655 * 120.00158 * 0.02562 * 19 18 16 21 21 C 1.47181 * 120.00370 * 180.02562 * 19 18 16 22 22 C 1.35097 * 122.48863 * 179.73650 * 21 19 18 23 23 S 1.76191 * 108.21621 * 179.87898 * 22 21 19 24 24 C 1.76049 * 90.15895 * 0.32135 * 23 22 21 25 25 O 1.35496 * 125.17933 * 179.83512 * 24 23 22 26 26 N 1.29255 * 109.64603 * 359.81255 * 24 23 22 27 27 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 28 28 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 29 29 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 30 30 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 31 31 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 32 32 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 33 33 H 1.07999 * 125.88993 * 359.96206 * 22 21 19 34 34 H 0.96698 * 114.00068 * 269.97207 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1994 -7.5038 0.6949 21 6 -1.9646 -8.4804 -1.2792 22 6 -2.3979 -9.6227 -0.7026 23 16 -3.0799 -10.6505 -1.9607 24 6 -2.7027 -9.4283 -3.1704 25 8 -2.9620 -9.5359 -4.4960 26 7 -2.1413 -8.4125 -2.6015 27 1 -0.4850 0.8400 0.0004 28 1 -0.7146 -1.7148 -0.3630 29 1 -0.5197 -2.8483 1.0094 30 1 1.8513 -4.1847 1.0018 31 1 2.9071 -3.7537 -0.3789 32 1 -1.0306 -6.1896 -2.0959 33 1 -2.3379 -9.8636 0.3485 34 1 -2.2441 -9.9353 -5.0060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961517311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:48 Heat of formation + Delta-G solvation = 64.404440 kcal Electronic energy + Delta-G solvation = -20396.223874 eV Core-core repulsion = 17038.784081 eV Total energy + Delta-G solvation = -3357.439793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.87734 -39.87774 -38.34902 -37.83518 -36.00947 -35.70269 -33.51906 -30.13968 -30.00346 -28.24775 -25.81180 -24.21814 -22.53323 -22.01178 -21.87606 -21.00517 -19.69632 -19.09805 -18.21630 -17.63383 -17.52023 -16.95076 -16.50140 -16.37677 -15.59999 -15.26044 -14.98229 -14.72920 -14.66112 -14.38890 -14.26463 -13.85769 -13.75147 -13.68691 -13.22099 -12.98610 -12.33759 -12.25110 -12.05259 -11.96678 -11.52819 -11.35784 -11.21521 -11.07586 -10.61575 -10.22022 -9.63038 -9.05040 -8.58065 -7.84873 -4.27936 -1.60888 0.39323 0.80465 1.05769 1.57966 1.67036 1.92330 2.06504 2.14770 2.37457 2.73091 2.78052 3.09561 3.25947 3.34822 3.47797 3.60978 3.65485 3.84451 3.89757 4.04359 4.11675 4.34710 4.41027 4.46660 4.48461 4.76702 4.79819 4.91302 5.09256 5.39897 5.87348 5.99856 6.17418 6.54966 7.04938 7.56431 7.92340 8.01817 8.73363 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.040232 B = 0.002757 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.789020 B =10154.155552 C =10435.478464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.082 4.082 3 Si 1.048 2.952 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.198 1.198 7 C 0.379 3.621 8 H 0.289 0.711 9 N -0.423 5.423 10 C 0.097 3.903 11 C -0.185 4.185 12 H 0.127 0.873 13 C -0.179 4.179 14 H 0.134 0.866 15 C 0.100 3.900 16 C 0.095 3.905 17 H 0.120 0.880 18 N -0.702 5.702 19 C 0.582 3.418 20 O -0.635 6.635 21 C -0.067 4.067 22 C -0.721 4.721 23 S -0.341 6.341 24 C -0.181 4.181 25 O -0.436 6.436 26 N -0.465 5.465 27 H 0.376 0.624 28 H 0.172 0.828 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.179 0.821 32 H 0.402 0.598 33 H 0.028 0.972 34 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.368 59.235 8.945 68.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.316 4.316 3 Si 0.859 3.141 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.119 1.119 7 C 0.199 3.801 8 H 0.304 0.696 9 N -0.092 5.092 10 C -0.021 4.021 11 C -0.206 4.206 12 H 0.145 0.855 13 C -0.200 4.200 14 H 0.152 0.848 15 C -0.019 4.019 16 C -0.012 4.012 17 H 0.138 0.862 18 N -0.351 5.351 19 C 0.382 3.618 20 O -0.523 6.523 21 C -0.213 4.213 22 C -0.861 4.861 23 S -0.121 6.121 24 C -0.460 4.460 25 O -0.239 6.239 26 N -0.191 5.191 27 H 0.196 0.804 28 H 0.189 0.811 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.197 0.803 32 H 0.237 0.763 33 H 0.046 0.954 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 31.118 58.658 9.248 67.042 hybrid contribution -0.484 -0.703 -0.318 0.910 sum 30.634 57.955 8.929 66.159 Atomic orbital electron populations 1.69784 1.09958 1.41048 0.97496 1.29004 0.97679 1.07333 0.97630 0.84000 0.79856 0.68220 0.82035 1.17354 1.19186 1.11856 1.26831 1.02761 0.80019 0.70534 0.69601 1.51638 1.12430 1.08672 1.36415 1.24337 0.76216 0.99469 1.02119 1.24254 1.02125 0.90788 1.03418 0.85496 1.24375 0.89164 1.02695 1.03771 0.84822 1.23265 1.00103 0.75627 1.02925 1.21687 0.97327 0.85464 0.96710 0.86187 1.44899 1.63055 1.16233 1.10917 1.17210 0.77872 0.81239 0.85515 1.90361 1.63429 1.82289 1.16217 1.17845 1.17535 0.97358 0.88602 1.20460 1.66939 1.06962 0.91773 1.81589 1.83571 1.36315 1.10649 1.20844 1.42967 0.98472 0.83670 1.85041 1.41178 1.82562 1.15169 1.65336 1.17011 1.26976 1.09794 0.80378 0.81144 0.85450 0.84509 0.80337 0.76327 0.95395 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 7.90 10.12 21.65 0.22 8.12 16 2 C -0.08 1.71 5.50 84.86 0.47 2.18 16 3 Si 1.05 -21.36 29.55 68.60 2.03 -19.33 16 4 H -0.25 3.95 7.11 99.48 0.71 4.66 16 5 H -0.27 3.74 7.11 99.48 0.71 4.45 16 6 H -0.20 4.55 7.11 99.48 0.71 5.25 16 7 C 0.38 -9.42 10.42 84.03 0.88 -8.55 16 8 H 0.29 -11.19 7.83 -2.91 -0.02 -11.21 16 9 N -0.42 5.93 3.46 -678.24 -2.35 3.58 16 10 C 0.10 -0.29 6.43 85.80 0.55 0.26 16 11 C -0.19 -2.05 6.96 -9.89 -0.07 -2.12 16 12 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 13 C -0.18 -1.75 7.05 -9.90 -0.07 -1.82 16 14 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 15 C 0.10 -0.83 7.05 86.52 0.61 -0.22 16 16 C 0.10 2.70 5.97 44.99 0.27 2.97 16 17 H 0.12 3.67 7.40 -2.39 -0.02 3.65 16 18 N -0.70 -35.22 5.56 -446.03 -2.48 -37.70 16 19 C 0.58 41.59 7.79 86.59 0.67 42.26 16 20 O -0.63 -46.95 16.23 -4.20 -0.07 -47.02 16 21 C -0.07 -5.93 6.67 40.50 0.27 -5.66 16 22 C -0.72 -70.60 10.84 67.10 0.73 -69.87 16 23 S -0.34 -31.77 23.42 -56.49 -1.32 -33.09 16 24 C -0.18 -16.21 8.88 130.62 1.16 -15.05 16 25 O -0.44 -34.60 13.64 -87.97 -1.20 -35.80 16 26 N -0.47 -40.20 10.01 -304.23 -3.05 -43.25 16 27 H 0.38 -5.87 8.31 -92.71 -0.77 -6.64 16 28 H 0.17 -0.94 5.34 -2.39 -0.01 -0.95 16 29 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.14 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H 0.18 -3.24 8.14 -2.39 -0.02 -3.26 16 32 H 0.40 20.24 8.30 -92.70 -0.77 19.47 16 33 H 0.03 2.82 8.01 -2.91 -0.02 2.80 16 34 H 0.30 20.62 9.06 -74.06 -0.67 19.95 16 Total: -1.00 -216.85 311.84 -3.02 -219.86 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -0.26 Total: 40.23 kcal Atomic # 6 Polarization: -61.08 SS G_CDS: 5.47 Total: -55.61 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -7.65 Total: -69.24 kcal Atomic # 8 Polarization: -81.55 SS G_CDS: -1.27 Total: -82.82 kcal Atomic # 14 Polarization: -21.36 SS G_CDS: 2.03 Total: -19.33 kcal Atomic # 16 Polarization: -31.77 SS G_CDS: -1.32 Total: -33.09 kcal Total: -216.85 -3.02 -219.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961517311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 284.268 kcal (2) G-P(sol) polarization free energy of solvation -216.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -219.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds