Wall clock time and date at job start Tue Mar 31 2020 07:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47864 * 126.94685 * 0.02779 * 9 7 2 11 11 C 1.56021 * 105.10416 * 181.97612 * 10 9 7 12 12 H 1.09003 * 116.25028 * 159.68077 * 11 10 9 13 13 C 1.57083 * 99.60735 * 32.80765 * 11 10 9 14 14 C 1.49290 * 126.93985 * 179.71194 * 9 7 2 15 15 H 1.08997 * 116.15677 * 15.86358 * 14 9 7 16 16 C 1.55482 * 104.35427 * 246.77810 * 14 9 7 17 17 N 1.47859 * 105.17781 * 288.90623 * 16 14 9 18 18 C 1.34775 * 126.94990 * 181.92262 * 17 16 14 19 19 O 1.21650 * 119.99979 * 180.02562 * 18 17 16 20 20 C 1.47182 * 120.00048 * 359.97438 * 18 17 16 21 21 C 1.35085 * 122.48744 * 179.73921 * 20 18 17 22 22 S 1.76190 * 108.21666 * 179.87722 * 21 20 18 23 23 C 1.76053 * 90.15963 * 0.31614 * 22 21 20 24 24 O 1.35490 * 125.18024 * 179.77558 * 23 22 21 25 25 N 1.29255 * 109.64075 * 359.81828 * 23 22 21 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.08995 * 110.31873 * 300.88539 * 10 9 7 28 28 H 1.09002 * 110.31321 * 63.07753 * 10 9 7 29 29 H 1.09001 * 112.36900 * 64.26801 * 13 11 10 30 30 H 1.09000 * 112.36910 * 191.71305 * 13 11 10 31 31 H 1.09003 * 110.35167 * 169.94076 * 16 14 9 32 32 H 1.09008 * 110.30151 * 47.85182 * 16 14 9 33 33 H 1.07997 * 125.89087 * 359.97438 * 21 20 18 34 34 H 0.96701 * 114.00263 * 270.04300 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5668 -0.0006 11 6 -0.3638 -4.1104 0.0488 12 1 -1.3398 -4.4465 0.3989 13 6 0.8873 -4.5275 0.9022 14 6 1.9100 -3.7617 -0.0177 15 1 2.9664 -3.8365 0.2403 16 6 1.5026 -4.3421 -1.4014 17 7 0.0463 -4.5801 -1.3077 18 6 -0.7501 -5.1134 -2.2553 19 8 -1.9397 -5.2523 -2.0424 20 6 -0.1806 -5.5265 -3.5481 21 6 -0.9309 -6.0708 -4.5307 22 16 0.1221 -6.4171 -5.9002 23 6 1.5025 -5.7940 -5.0026 24 8 2.7748 -5.7404 -5.4654 25 7 1.1176 -5.3963 -3.8346 26 1 -0.4850 0.8400 0.0040 27 1 -0.5781 -2.0936 0.8793 28 1 -0.5774 -2.1511 -0.9095 29 1 0.8524 -4.1240 1.9141 30 1 1.0524 -5.6050 0.8971 31 1 2.0278 -5.2786 -1.5892 32 1 1.7185 -3.6229 -2.1916 33 1 -1.9933 -6.2596 -4.4853 34 1 3.2964 -6.5320 -5.2747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032576016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:46 Heat of formation + Delta-G solvation = 48.655226 kcal Electronic energy + Delta-G solvation = -21803.695167 eV Core-core repulsion = 18445.572437 eV Total energy + Delta-G solvation = -3358.122730 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.52624 -39.42996 -38.01482 -36.95146 -33.58675 -31.51524 -30.07613 -29.05938 -28.50539 -25.55077 -25.12912 -23.59750 -22.12655 -20.14667 -19.79229 -19.52365 -18.43945 -17.94452 -16.76456 -16.18962 -15.89429 -15.65243 -14.95700 -14.73207 -14.37152 -13.94759 -13.51704 -13.31140 -12.83145 -12.45426 -12.09521 -11.89334 -11.81773 -11.58430 -11.26681 -10.98597 -10.83902 -10.75520 -10.57137 -10.25274 -10.06199 -9.88219 -9.74440 -9.65418 -9.55426 -9.00045 -8.66801 -7.96471 -6.87583 -5.72968 -3.06756 0.28864 0.80081 1.30850 1.94072 3.20998 3.40173 3.44784 3.45583 3.47292 3.60177 4.45966 4.59349 4.97874 5.08050 5.19745 5.27961 5.39405 5.56599 5.67054 5.68664 5.79062 6.13936 6.28114 6.36164 6.46916 6.58247 6.65624 6.81030 6.86188 7.27593 7.45446 7.51889 7.74771 8.04016 8.14168 8.47626 9.14284 9.75218 10.44582 11.39523 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.004877 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.011522 B = 5739.609275 C = 6307.943292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.175 3.825 11 C 0.097 3.903 12 H 0.116 0.884 13 C -0.149 4.149 14 C 0.135 3.865 15 H 0.106 0.894 16 C 0.103 3.897 17 N -0.585 5.585 18 C 0.599 3.401 19 O -0.550 6.550 20 C 0.039 3.961 21 C -0.169 4.169 22 S 0.083 5.917 23 C 0.255 3.745 24 O -0.429 6.429 25 N -0.445 5.445 26 H 0.253 0.747 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.194 0.806 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -16.052 -8.432 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.050 3.950 11 C -0.005 4.005 12 H 0.134 0.866 13 C -0.189 4.189 14 C 0.027 3.973 15 H 0.124 0.876 16 C -0.022 4.022 17 N -0.316 5.316 18 C 0.384 3.616 19 O -0.430 6.430 20 C -0.092 4.092 21 C -0.310 4.310 22 S 0.330 5.670 23 C -0.065 4.065 24 O -0.236 6.236 25 N -0.171 5.171 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.211 0.789 34 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.397 -15.502 -9.246 18.208 hybrid contribution 0.358 0.808 0.565 1.049 sum 2.756 -14.694 -8.681 17.288 Atomic orbital electron populations 1.69912 1.04944 1.25245 1.56692 1.24810 0.95683 0.97687 1.02186 0.86114 0.78561 0.83501 0.77532 1.21685 1.21704 1.20629 1.19053 0.90406 0.82091 1.44075 0.90160 1.45232 1.01279 0.99366 1.86325 1.21922 0.84858 0.86884 1.01359 1.24454 0.97966 0.97964 0.80163 0.86631 1.24198 0.96608 0.98897 0.99201 1.23256 0.96496 0.86245 0.91346 0.87639 1.23185 0.78717 0.99542 1.00775 1.49034 1.10209 1.57653 1.14658 1.16615 0.85159 0.78335 0.81537 1.90792 1.14363 1.58020 1.79780 1.20102 0.87292 1.04204 0.97627 1.27079 1.05450 1.04693 0.93751 1.85192 1.03090 1.59469 1.19289 1.25117 0.90295 1.00965 0.90151 1.84893 1.17741 1.44871 1.76047 1.66999 1.15936 1.17581 1.16600 0.93631 0.92438 0.93514 0.89643 0.91678 0.92328 0.90591 0.78868 0.73549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 10.56 55.49 0.59 -26.74 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.21 10.38 -15.06 -0.16 -6.37 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.78 3.02 -156.44 -0.47 -15.25 16 10 C 0.17 4.30 4.76 -1.68 -0.01 4.29 16 11 C 0.10 1.92 5.24 -62.55 -0.33 1.59 16 12 H 0.12 2.18 8.05 -51.93 -0.42 1.76 16 13 C -0.15 -2.59 6.83 -22.10 -0.15 -2.74 16 14 C 0.14 2.62 5.51 -62.64 -0.35 2.28 16 15 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 16 C 0.10 1.93 4.84 -1.98 -0.01 1.92 16 17 N -0.58 -11.52 2.95 -158.45 -0.47 -11.99 16 18 C 0.60 11.67 7.87 -12.63 -0.10 11.57 16 19 O -0.55 -11.72 17.01 5.23 0.09 -11.63 16 20 C 0.04 0.64 6.61 -84.60 -0.56 0.08 16 21 C -0.17 -2.18 10.84 29.61 0.32 -1.86 16 22 S 0.08 0.84 23.42 -107.50 -2.52 -1.68 16 23 C 0.26 3.12 8.88 51.68 0.46 3.58 16 24 O -0.43 -4.16 13.64 -18.16 -0.25 -4.41 16 25 N -0.45 -6.89 7.74 -11.34 -0.09 -6.97 16 26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.06 1.53 7.47 -51.93 -0.39 1.15 16 28 H 0.05 1.33 7.67 -51.93 -0.40 0.93 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.97 7.57 -51.93 -0.39 0.58 16 32 H 0.08 1.65 7.78 -51.92 -0.40 1.24 16 33 H 0.19 2.21 8.01 -52.49 -0.42 1.78 16 34 H 0.41 1.57 9.06 45.56 0.41 1.98 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -34.02 302.63 -7.38 -41.40 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -2.82 Total: 1.56 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -0.97 Total: 14.03 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.44 Total: -60.94 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.16 Total: -16.04 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.52 Total: -1.68 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.02 -7.38 -41.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032576016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.054 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds