Wall clock time and date at job start Tue Mar 31 2020 07:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47864 * 126.94685 * 0.02779 * 9 7 2 11 11 C 1.56021 * 105.10416 * 181.97612 * 10 9 7 12 12 H 1.09003 * 116.25028 * 159.68077 * 11 10 9 13 13 C 1.57083 * 99.60735 * 32.80765 * 11 10 9 14 14 C 1.49290 * 126.93985 * 179.71194 * 9 7 2 15 15 H 1.08997 * 116.15677 * 15.86358 * 14 9 7 16 16 C 1.55482 * 104.35427 * 246.77810 * 14 9 7 17 17 N 1.47859 * 105.17781 * 288.90623 * 16 14 9 18 18 C 1.34775 * 126.94990 * 181.92262 * 17 16 14 19 19 O 1.21650 * 119.99979 * 180.02562 * 18 17 16 20 20 C 1.47182 * 120.00048 * 359.97438 * 18 17 16 21 21 C 1.35085 * 122.48744 * 179.73921 * 20 18 17 22 22 S 1.76190 * 108.21666 * 179.87722 * 21 20 18 23 23 C 1.76053 * 90.15963 * 0.31614 * 22 21 20 24 24 O 1.35490 * 125.18024 * 179.77558 * 23 22 21 25 25 N 1.29255 * 109.64075 * 359.81828 * 23 22 21 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.08995 * 110.31873 * 300.88539 * 10 9 7 28 28 H 1.09002 * 110.31321 * 63.07753 * 10 9 7 29 29 H 1.09001 * 112.36900 * 64.26801 * 13 11 10 30 30 H 1.09000 * 112.36910 * 191.71305 * 13 11 10 31 31 H 1.09003 * 110.35167 * 169.94076 * 16 14 9 32 32 H 1.09008 * 110.30151 * 47.85182 * 16 14 9 33 33 H 1.07997 * 125.89087 * 359.97438 * 21 20 18 34 34 H 0.96701 * 114.00263 * 270.04300 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5668 -0.0006 11 6 -0.3638 -4.1104 0.0488 12 1 -1.3398 -4.4465 0.3989 13 6 0.8873 -4.5275 0.9022 14 6 1.9100 -3.7617 -0.0177 15 1 2.9664 -3.8365 0.2403 16 6 1.5026 -4.3421 -1.4014 17 7 0.0463 -4.5801 -1.3077 18 6 -0.7501 -5.1134 -2.2553 19 8 -1.9397 -5.2523 -2.0424 20 6 -0.1806 -5.5265 -3.5481 21 6 -0.9309 -6.0708 -4.5307 22 16 0.1221 -6.4171 -5.9002 23 6 1.5025 -5.7940 -5.0026 24 8 2.7748 -5.7404 -5.4654 25 7 1.1176 -5.3963 -3.8346 26 1 -0.4850 0.8400 0.0040 27 1 -0.5781 -2.0936 0.8793 28 1 -0.5774 -2.1511 -0.9095 29 1 0.8524 -4.1240 1.9141 30 1 1.0524 -5.6050 0.8971 31 1 2.0278 -5.2786 -1.5892 32 1 1.7185 -3.6229 -2.1916 33 1 -1.9933 -6.2596 -4.4853 34 1 3.2964 -6.5320 -5.2747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032576016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:45 Heat of formation + Delta-G solvation = 21.368631 kcal Electronic energy + Delta-G solvation = -21804.878403 eV Core-core repulsion = 18445.572437 eV Total energy + Delta-G solvation = -3359.305966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.89286 -40.69244 -39.30874 -38.00699 -35.47493 -33.31517 -31.21684 -30.71987 -30.26152 -26.98496 -26.71435 -25.17456 -23.48925 -21.61098 -21.32978 -20.60401 -19.85092 -19.19486 -18.43542 -17.50803 -17.27120 -17.02407 -16.45141 -16.27271 -15.78526 -15.30299 -15.01527 -14.94134 -14.12692 -13.91824 -13.61542 -13.37458 -13.19836 -13.01071 -12.89435 -12.77262 -12.71099 -12.33677 -12.17251 -12.04950 -11.89998 -11.53245 -11.32314 -10.83825 -10.67859 -10.61464 -9.99168 -9.53434 -8.90241 -7.84842 -5.20210 -0.67805 -0.08863 0.32561 0.78960 1.45500 1.47520 1.56147 1.93040 2.21037 2.43397 2.48317 3.31937 3.37494 3.53400 3.74973 3.92059 3.98608 4.06514 4.11769 4.19604 4.54710 4.64364 4.72346 4.90702 4.99750 5.02311 5.12581 5.28801 5.43848 5.51096 5.63881 6.09826 6.19404 6.41097 6.54884 7.00296 7.02978 7.70426 8.41322 9.26727 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.004877 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.011522 B = 5739.609275 C = 6307.943292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.072 4.072 3 Si 0.978 3.022 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.261 1.261 7 C -0.230 4.230 8 H 0.094 0.906 9 N -0.617 5.617 10 C 0.188 3.812 11 C 0.101 3.899 12 H 0.123 0.877 13 C -0.124 4.124 14 C 0.129 3.871 15 H 0.133 0.867 16 C 0.121 3.879 17 N -0.593 5.593 18 C 0.592 3.408 19 O -0.579 6.579 20 C 0.007 3.993 21 C -0.170 4.170 22 S 0.177 5.823 23 C 0.252 3.748 24 O -0.434 6.434 25 N -0.482 5.482 26 H 0.244 0.756 27 H 0.024 0.976 28 H -0.007 1.007 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.204 0.796 34 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 -18.340 -9.605 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.265 4.265 3 Si 0.807 3.193 4 H -0.221 1.221 5 H -0.225 1.225 6 H -0.185 1.185 7 C -0.358 4.358 8 H 0.112 0.888 9 N -0.342 5.342 10 C 0.062 3.938 11 C -0.002 4.002 12 H 0.141 0.859 13 C -0.163 4.163 14 C 0.022 3.978 15 H 0.151 0.849 16 C -0.004 4.004 17 N -0.324 5.324 18 C 0.379 3.621 19 O -0.461 6.461 20 C -0.124 4.124 21 C -0.311 4.311 22 S 0.426 5.574 23 C -0.068 4.068 24 O -0.245 6.245 25 N -0.209 5.209 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.011 0.989 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.221 0.779 34 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 4.467 -17.861 -10.438 21.164 hybrid contribution -0.233 1.415 0.748 1.618 sum 4.234 -16.445 -9.689 19.551 Atomic orbital electron populations 1.70160 1.06610 1.25157 1.58867 1.25672 0.96447 1.01199 1.03158 0.85073 0.77942 0.79209 0.77099 1.22060 1.22537 1.18486 1.19542 0.91237 0.83190 1.41874 0.88833 1.45495 1.01512 1.01046 1.86105 1.21524 0.84961 0.90118 0.97210 1.24323 0.99843 0.94331 0.81717 0.85910 1.24087 0.93337 1.00734 0.98150 1.23674 0.98299 0.83484 0.92317 0.84894 1.22918 0.78527 0.99915 0.99003 1.49105 1.10651 1.57922 1.14678 1.17169 0.84867 0.77562 0.82505 1.90751 1.15504 1.59247 1.80610 1.19647 0.88451 1.07273 0.97052 1.27393 1.06464 1.02716 0.94573 1.84910 0.99803 1.56944 1.15763 1.25275 0.91708 0.99965 0.89896 1.84854 1.17111 1.46881 1.75626 1.66868 1.15718 1.19425 1.18884 0.94687 0.95771 0.98913 0.89446 0.87934 0.89311 0.93946 0.77893 0.70544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.89 10.56 21.65 0.23 -59.66 16 2 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 3 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.23 -12.64 10.38 84.03 0.87 -11.77 16 8 H 0.09 4.78 7.83 -2.91 -0.02 4.75 16 9 N -0.62 -31.03 3.02 -648.87 -1.96 -32.99 16 10 C 0.19 9.72 4.76 87.17 0.42 10.14 16 11 C 0.10 4.05 5.24 46.93 0.25 4.29 16 12 H 0.12 4.72 8.05 -2.39 -0.02 4.71 16 13 C -0.12 -4.05 6.83 33.60 0.23 -3.82 16 14 C 0.13 4.80 5.51 46.87 0.26 5.06 16 15 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 16 C 0.12 4.44 4.84 86.97 0.42 4.86 16 17 N -0.59 -23.48 2.95 -773.46 -2.28 -25.76 16 18 C 0.59 23.35 7.87 86.59 0.68 24.03 16 19 O -0.58 -25.24 17.01 -4.19 -0.07 -25.31 16 20 C 0.01 0.23 6.61 40.50 0.27 0.50 16 21 C -0.17 -4.11 10.84 67.09 0.73 -3.38 16 22 S 0.18 3.00 23.42 -56.49 -1.32 1.67 16 23 C 0.25 5.52 8.88 130.62 1.16 6.68 16 24 O -0.43 -7.15 13.64 -87.90 -1.20 -8.35 16 25 N -0.48 -14.30 7.74 -304.25 -2.35 -16.65 16 26 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 27 H 0.02 1.38 7.47 -2.39 -0.02 1.36 16 28 H -0.01 -0.45 7.67 -2.39 -0.02 -0.47 16 29 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.09 2.74 7.57 -2.39 -0.02 2.72 16 32 H 0.04 1.86 7.78 -2.38 -0.02 1.84 16 33 H 0.20 4.34 8.01 -2.91 -0.02 4.32 16 34 H 0.43 1.86 9.06 -74.06 -0.67 1.19 16 Total: -1.00 -78.28 302.63 -0.71 -78.98 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.48 Total: 6.68 kcal Atomic # 6 Polarization: 27.13 SS G_CDS: 5.74 Total: 32.87 kcal Atomic # 7 Polarization: -128.69 SS G_CDS: -6.37 Total: -135.06 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.27 Total: -33.66 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.32 Total: 1.67 kcal Total: -78.28 -0.71 -78.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032576016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.350 kcal (2) G-P(sol) polarization free energy of solvation -78.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds