Wall clock time and date at job start Tue Mar 31 2020 07:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99448 * 2 1 4 4 H 1.48502 * 109.47398 * 239.99637 * 3 2 1 5 5 H 1.48499 * 109.47659 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47008 * 119.99874 * 3 2 1 7 7 C 1.38797 * 120.00560 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99691 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99690 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99672 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47085 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99667 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00265 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.62983 * 179.97438 * 13 11 10 15 15 C 1.53193 * 108.77395 * 233.62694 * 14 13 11 16 16 C 1.53042 * 109.31086 * 305.36788 * 15 14 13 17 17 O 1.42897 * 109.45943 * 301.35601 * 16 15 14 18 18 C 1.53006 * 109.45624 * 181.38506 * 16 15 14 19 19 F 1.39900 * 109.46764 * 179.97438 * 18 16 15 20 20 F 1.39897 * 109.47129 * 299.99710 * 18 16 15 21 21 C 1.53038 * 109.53864 * 61.36812 * 16 15 14 22 22 C 1.46927 * 120.62846 * 0.02562 * 13 11 10 23 23 H 0.97007 * 120.00829 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47695 * 59.99849 * 10 9 7 25 25 H 1.09001 * 109.47448 * 299.99773 * 10 9 7 26 26 H 1.09000 * 109.58495 * 113.83863 * 14 13 11 27 27 H 1.08997 * 109.70186 * 353.48429 * 14 13 11 28 28 H 1.09001 * 109.49755 * 185.41463 * 15 14 13 29 29 H 1.09000 * 109.49433 * 65.31797 * 15 14 13 30 30 H 0.96705 * 114.00196 * 180.02562 * 17 16 15 31 31 H 1.09000 * 109.47050 * 59.99925 * 18 16 15 32 32 H 1.08994 * 109.50288 * 58.58547 * 21 16 15 33 33 H 1.09004 * 109.49418 * 178.68838 * 21 16 15 34 34 H 1.08997 * 109.58661 * 246.16202 * 22 13 11 35 35 H 1.09005 * 109.58352 * 6.58815 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2018 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8912 0.0021 11 6 1.9877 -5.3026 0.0017 12 8 0.7914 -5.5022 0.0009 13 7 2.8445 -6.3430 0.0033 14 6 2.3445 -7.7245 0.0034 15 6 2.9842 -8.4802 1.1724 16 6 4.5072 -8.3629 1.0781 17 8 4.9495 -8.8983 -0.1708 18 6 5.1507 -9.1455 2.2247 19 9 6.5429 -9.0388 2.1383 20 9 4.7174 -8.6219 3.4475 21 6 4.9141 -6.8907 1.1742 22 6 4.2963 -6.1171 0.0059 23 1 -0.4852 0.8400 -0.0004 24 1 3.1240 -3.7308 0.8924 25 1 3.1253 -3.7316 -0.8875 26 1 2.6115 -8.2099 -0.9353 27 1 1.2607 -7.7230 0.1187 28 1 2.6968 -9.5307 1.1274 29 1 2.6438 -8.0493 2.1140 30 1 5.9071 -8.8572 -0.2994 31 1 4.8620 -10.1943 2.1557 32 1 4.5555 -6.4748 2.1157 33 1 6.0002 -6.8099 1.1303 34 1 4.7229 -6.4709 -0.9326 35 1 4.5003 -5.0528 0.1241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116676095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:16 Heat of formation + Delta-G solvation = -189.901639 kcal Electronic energy + Delta-G solvation = -22056.027955 eV Core-core repulsion = 18236.871436 eV Total energy + Delta-G solvation = -3819.156519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.42488 -47.40869 -40.23953 -38.34202 -35.54532 -32.51324 -32.43233 -31.51777 -29.31456 -27.40524 -25.49108 -23.87126 -23.43220 -21.04226 -19.30224 -18.15565 -17.88258 -17.58896 -17.49200 -16.79684 -15.82806 -15.59840 -15.35536 -14.96313 -14.80634 -14.14948 -14.12040 -13.95070 -13.83350 -13.76019 -13.30519 -12.95955 -12.75377 -12.58448 -12.41730 -12.14347 -11.90716 -11.59978 -11.47824 -11.04621 -11.04087 -10.90499 -10.75951 -10.35966 -9.81682 -9.37689 -9.06315 -8.57053 -8.23701 -6.50765 -6.21729 -3.92672 2.89819 2.99962 3.21106 3.23295 3.26333 3.29099 3.49172 3.58626 3.74044 3.89229 4.16903 4.20134 4.51011 4.58655 4.82042 4.90387 5.05346 5.13247 5.17996 5.21801 5.30000 5.45050 5.49002 5.59043 5.73525 5.81950 5.86225 5.98588 6.09797 6.59356 6.98820 7.52779 7.58869 8.34474 8.53566 9.23344 10.85624 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.027186 B = 0.003494 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.711892 B = 8010.798568 C = 8486.856718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.620 5.620 14 C 0.122 3.878 15 C -0.121 4.121 16 C 0.095 3.905 17 O -0.536 6.536 18 C 0.236 3.764 19 F -0.205 7.205 20 F -0.196 7.196 21 C -0.167 4.167 22 C 0.118 3.882 23 H 0.269 0.731 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.383 0.617 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.227 -19.637 2.227 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.324 3.676 12 O -0.390 6.390 13 N -0.357 5.357 14 C -0.001 4.001 15 C -0.160 4.160 16 C 0.052 3.948 17 O -0.342 6.342 18 C 0.182 3.818 19 F -0.186 7.186 20 F -0.177 7.177 21 C -0.205 4.205 22 C -0.006 4.006 23 H 0.079 0.921 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.231 0.769 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.646 -19.897 2.168 22.671 hybrid contribution 2.902 1.341 0.304 3.211 sum 13.549 -18.557 2.472 23.109 Atomic orbital electron populations 1.70003 1.05961 1.27584 1.46727 1.24980 0.95012 0.98995 0.94498 0.86233 0.79252 0.81264 0.78801 1.19926 1.20797 1.19940 1.22816 0.94846 0.91652 1.59140 0.91004 1.85406 1.04933 0.96311 1.96702 1.23560 1.06527 0.95414 1.04676 1.20347 0.86204 0.86196 0.74898 1.90691 1.15146 1.85211 1.47948 1.48097 1.06205 1.05815 1.75554 1.21359 1.00359 0.80983 0.97427 1.21962 0.90155 1.02400 1.01457 1.22180 0.96513 0.92895 0.83173 1.86631 1.28625 1.84080 1.34866 1.22831 0.75898 1.00413 0.82693 1.92970 1.31835 1.97562 1.96225 1.93004 1.89255 1.89044 1.46408 1.22611 1.01988 0.94244 1.01666 1.21545 0.80213 1.01130 0.97672 0.92111 0.89286 0.89253 0.90783 0.88440 0.89517 0.89045 0.76857 0.86658 0.89342 0.89587 0.90773 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.06 4.50 36.01 0.16 -2.90 16 11 C 0.54 10.15 7.72 -10.98 -0.08 10.06 16 12 O -0.52 -11.73 15.28 5.56 0.08 -11.65 16 13 N -0.62 -8.70 2.97 -172.80 -0.51 -9.22 16 14 C 0.12 1.45 6.19 -3.71 -0.02 1.43 16 15 C -0.12 -1.11 4.97 -26.61 -0.13 -1.24 16 16 C 0.09 0.76 0.67 -90.58 -0.06 0.70 16 17 O -0.54 -3.87 11.70 -35.23 -0.41 -4.28 16 18 C 0.24 1.74 4.54 37.16 0.17 1.91 16 19 F -0.20 -1.68 16.41 2.25 0.04 -1.64 16 20 F -0.20 -1.91 16.36 2.25 0.04 -1.87 16 21 C -0.17 -1.48 4.83 -26.64 -0.13 -1.61 16 22 C 0.12 1.26 6.10 -3.74 -0.02 1.24 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.09 1.66 7.69 -51.92 -0.40 1.26 16 25 H 0.09 1.67 7.94 -51.92 -0.41 1.26 16 26 H 0.07 0.84 7.81 -51.93 -0.41 0.43 16 27 H 0.10 1.32 7.01 -51.93 -0.36 0.96 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.91 7.84 -51.93 -0.41 0.51 16 30 H 0.38 1.60 8.69 45.56 0.40 2.00 16 31 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.91 7.85 -51.93 -0.41 0.50 16 33 H 0.09 0.63 7.77 -51.93 -0.40 0.23 16 34 H 0.07 0.71 7.81 -51.93 -0.41 0.30 16 35 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -34.64 310.65 -6.02 -40.66 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.51 Total: -0.42 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.22 Total: -34.62 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.33 Total: -15.93 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.07 Total: -3.51 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.64 -6.02 -40.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116676095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.241 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds