Wall clock time and date at job start Tue Mar 31 2020 07:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99448 * 2 1 4 4 H 1.48502 * 109.47398 * 239.99637 * 3 2 1 5 5 H 1.48499 * 109.47659 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47008 * 119.99874 * 3 2 1 7 7 C 1.38797 * 120.00560 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99691 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99690 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99672 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47085 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99667 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00265 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.62983 * 179.97438 * 13 11 10 15 15 C 1.53193 * 108.77395 * 233.62694 * 14 13 11 16 16 C 1.53042 * 109.31086 * 305.36788 * 15 14 13 17 17 O 1.42897 * 109.45943 * 301.35601 * 16 15 14 18 18 C 1.53006 * 109.45624 * 181.38506 * 16 15 14 19 19 F 1.39900 * 109.46764 * 179.97438 * 18 16 15 20 20 F 1.39897 * 109.47129 * 299.99710 * 18 16 15 21 21 C 1.53038 * 109.53864 * 61.36812 * 16 15 14 22 22 C 1.46927 * 120.62846 * 0.02562 * 13 11 10 23 23 H 0.97007 * 120.00829 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47695 * 59.99849 * 10 9 7 25 25 H 1.09001 * 109.47448 * 299.99773 * 10 9 7 26 26 H 1.09000 * 109.58495 * 113.83863 * 14 13 11 27 27 H 1.08997 * 109.70186 * 353.48429 * 14 13 11 28 28 H 1.09001 * 109.49755 * 185.41463 * 15 14 13 29 29 H 1.09000 * 109.49433 * 65.31797 * 15 14 13 30 30 H 0.96705 * 114.00196 * 180.02562 * 17 16 15 31 31 H 1.09000 * 109.47050 * 59.99925 * 18 16 15 32 32 H 1.08994 * 109.50288 * 58.58547 * 21 16 15 33 33 H 1.09004 * 109.49418 * 178.68838 * 21 16 15 34 34 H 1.08997 * 109.58661 * 246.16202 * 22 13 11 35 35 H 1.09005 * 109.58352 * 6.58815 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2018 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8912 0.0021 11 6 1.9877 -5.3026 0.0017 12 8 0.7914 -5.5022 0.0009 13 7 2.8445 -6.3430 0.0033 14 6 2.3445 -7.7245 0.0034 15 6 2.9842 -8.4802 1.1724 16 6 4.5072 -8.3629 1.0781 17 8 4.9495 -8.8983 -0.1708 18 6 5.1507 -9.1455 2.2247 19 9 6.5429 -9.0388 2.1383 20 9 4.7174 -8.6219 3.4475 21 6 4.9141 -6.8907 1.1742 22 6 4.2963 -6.1171 0.0059 23 1 -0.4852 0.8400 -0.0004 24 1 3.1240 -3.7308 0.8924 25 1 3.1253 -3.7316 -0.8875 26 1 2.6115 -8.2099 -0.9353 27 1 1.2607 -7.7230 0.1187 28 1 2.6968 -9.5307 1.1274 29 1 2.6438 -8.0493 2.1140 30 1 5.9071 -8.8572 -0.2994 31 1 4.8620 -10.1943 2.1557 32 1 4.5555 -6.4748 2.1157 33 1 6.0002 -6.8099 1.1303 34 1 4.7229 -6.4709 -0.9326 35 1 4.5003 -5.0528 0.1241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116676095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:15 Heat of formation + Delta-G solvation = -215.425292 kcal Electronic energy + Delta-G solvation = -22057.134743 eV Core-core repulsion = 18236.871436 eV Total energy + Delta-G solvation = -3820.263307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.03880 -48.03528 -41.33282 -39.41198 -36.56003 -34.58790 -33.44525 -32.38319 -30.70016 -28.32098 -27.62890 -24.72466 -24.34773 -21.92793 -20.48752 -19.61866 -18.80558 -18.36086 -18.22068 -18.03011 -16.94287 -16.86654 -16.76689 -16.44177 -15.90204 -15.58417 -15.03356 -14.83726 -14.70137 -14.53165 -14.46505 -14.40307 -13.95454 -13.56775 -13.45288 -13.20915 -13.14342 -12.86677 -12.73936 -12.63617 -12.44325 -12.29061 -11.75758 -11.64980 -11.12979 -11.05532 -10.84749 -10.27416 -9.73629 -8.68070 -8.34463 -6.13333 1.24771 1.44148 1.45466 1.53950 1.55395 2.07088 2.27386 2.59759 2.92393 2.99681 3.19695 3.23048 3.28967 3.48219 3.68736 3.85494 3.99600 4.10424 4.21682 4.26099 4.33611 4.40493 4.46858 4.56123 4.67834 4.74904 4.85607 4.94065 5.15426 5.41153 5.51269 6.19211 6.24924 6.60070 7.06501 7.10957 8.74584 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.027186 B = 0.003494 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.711892 B = 8010.798568 C = 8486.856718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.565 6.565 13 N -0.607 5.607 14 C 0.118 3.882 15 C -0.118 4.118 16 C 0.103 3.897 17 O -0.539 6.539 18 C 0.236 3.764 19 F -0.208 7.208 20 F -0.211 7.211 21 C -0.164 4.164 22 C 0.111 3.889 23 H 0.271 0.729 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.398 0.602 31 H 0.147 0.853 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.208 -20.538 2.127 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.341 5.341 14 C -0.004 4.004 15 C -0.156 4.156 16 C 0.060 3.940 17 O -0.347 6.347 18 C 0.183 3.817 19 F -0.189 7.189 20 F -0.193 7.193 21 C -0.202 4.202 22 C -0.011 4.011 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.126 0.874 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.131 0.869 29 H 0.098 0.902 30 H 0.249 0.751 31 H 0.164 0.836 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.698 -20.844 2.068 25.028 hybrid contribution 2.056 1.467 0.303 2.544 sum 15.754 -19.377 2.371 25.085 Atomic orbital electron populations 1.70175 1.08011 1.28705 1.47893 1.26121 0.95940 1.03294 0.93650 0.85009 0.77820 0.75667 0.79531 1.18568 1.20402 1.18654 1.23162 0.95333 0.91921 1.59086 0.89889 1.85589 1.10555 0.99264 1.97031 1.23374 1.03442 0.94426 1.06283 1.20140 0.86010 0.86679 0.75138 1.90673 1.17180 1.85769 1.50750 1.48109 1.07238 1.05582 1.73209 1.21506 0.99471 0.79919 0.99464 1.21909 0.91050 1.03285 0.99350 1.21955 0.95588 0.92387 0.84047 1.86611 1.30227 1.83807 1.34074 1.23032 0.75519 1.01694 0.81486 1.92965 1.32135 1.97643 1.96165 1.92980 1.89436 1.89412 1.47459 1.22590 1.03105 0.94667 0.99860 1.21833 0.77959 1.01657 0.99684 0.91968 0.87570 0.87426 0.89456 0.90659 0.86932 0.90196 0.75054 0.83617 0.90859 0.87376 0.88632 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 2 C 0.01 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.55 -31.32 9.50 67.95 0.65 -30.67 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 10 C -0.12 -5.02 4.50 71.24 0.32 -4.70 16 11 C 0.53 20.38 7.72 87.66 0.68 21.06 16 12 O -0.57 -26.76 15.28 -3.03 -0.05 -26.81 16 13 N -0.61 -16.42 2.97 -819.00 -2.43 -18.85 16 14 C 0.12 2.70 6.19 86.36 0.53 3.23 16 15 C -0.12 -1.91 4.97 30.67 0.15 -1.75 16 16 C 0.10 1.33 0.67 -10.76 -0.01 1.32 16 17 O -0.54 -5.70 11.70 -148.98 -1.74 -7.44 16 18 C 0.24 2.75 4.54 71.98 0.33 3.07 16 19 F -0.21 -2.73 16.41 44.97 0.74 -1.99 16 20 F -0.21 -3.69 16.36 44.97 0.74 -2.95 16 21 C -0.16 -2.49 4.83 30.65 0.15 -2.34 16 22 C 0.11 2.11 6.10 86.34 0.53 2.63 16 23 H 0.27 15.55 8.31 -92.70 -0.77 14.77 16 24 H 0.11 3.90 7.69 -2.40 -0.02 3.88 16 25 H 0.11 3.93 7.94 -2.39 -0.02 3.91 16 26 H 0.09 1.79 7.81 -2.39 -0.02 1.77 16 27 H 0.07 2.08 7.01 -2.39 -0.02 2.07 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.51 7.84 -2.39 -0.02 1.49 16 30 H 0.40 1.66 8.69 -74.05 -0.64 1.02 16 31 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.38 7.85 -2.39 -0.02 1.36 16 33 H 0.11 1.20 7.77 -2.38 -0.02 1.18 16 34 H 0.10 1.48 7.81 -2.39 -0.02 1.47 16 35 H 0.09 1.80 5.93 -2.38 -0.01 1.78 16 Total: -1.00 -77.77 310.65 2.67 -75.10 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.48 Total: 9.86 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 3.79 Total: -6.83 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -2.15 Total: -74.76 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.79 Total: -34.25 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 1.47 Total: -4.95 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -77.77 2.67 -75.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116676095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.330 kcal (2) G-P(sol) polarization free energy of solvation -77.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds