Wall clock time and date at job start Tue Mar 31 2020 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00315 * 2 1 4 4 H 1.48506 * 109.47021 * 270.00701 * 3 2 1 5 5 H 1.48501 * 109.46878 * 30.00097 * 3 2 1 6 6 H 1.48493 * 109.47414 * 150.00505 * 3 2 1 7 7 C 1.37887 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99987 * 359.97438 * 7 2 1 10 10 S 1.81395 * 109.47134 * 180.02562 * 9 7 2 11 11 C 1.76201 * 103.00354 * 180.02562 * 10 9 7 12 12 C 1.38784 * 120.09941 * 0.02562 * 11 10 9 13 13 C 1.38203 * 119.98837 * 179.97438 * 12 11 10 14 14 C 1.38299 * 120.19698 * 0.02562 * 13 12 11 15 15 C 1.38261 * 120.20913 * 359.68274 * 14 13 12 16 16 C 1.38650 * 120.00710 * 0.59888 * 15 14 13 17 17 N 1.40135 * 120.09658 * 179.70312 * 16 15 14 18 18 C 1.34771 * 120.00591 * 34.66594 * 17 16 15 19 19 O 1.21303 * 119.99598 * 355.52588 * 18 17 16 20 20 C 1.50700 * 120.00308 * 175.25140 * 18 17 16 21 21 H 1.09001 * 115.54839 * 34.60518 * 20 18 17 22 22 C 1.53002 * 117.49999 * 248.89707 * 20 18 17 23 23 C 1.52999 * 60.00074 * 252.51398 * 22 20 18 24 24 H 1.08994 * 117.50526 * 107.49473 * 23 22 20 25 25 F 1.39908 * 117.49296 * 252.51549 * 23 22 20 26 26 H 0.96998 * 120.00055 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46802 * 60.00263 * 9 7 2 28 28 H 1.09005 * 109.47303 * 300.00460 * 9 7 2 29 29 H 1.08000 * 120.00643 * 0.02562 * 12 11 10 30 30 H 1.07999 * 119.90233 * 180.02562 * 13 12 11 31 31 H 1.08000 * 119.89400 * 179.97438 * 14 13 12 32 32 H 1.07996 * 119.99046 * 180.31962 * 15 14 13 33 33 H 0.97008 * 119.99894 * 214.67066 * 17 16 15 34 34 H 1.09005 * 117.49307 * 359.97438 * 22 20 18 35 35 H 1.08993 * 117.50118 * 145.01697 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1942 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 6 1.3825 -5.2949 -0.0013 12 6 0.0032 -5.1410 -0.0023 13 6 -0.8161 -6.2540 -0.0034 14 6 -0.2659 -7.5228 -0.0030 15 6 1.1071 -7.6856 -0.0082 16 6 1.9371 -6.5750 -0.0011 17 7 3.3290 -6.7380 0.0000 18 6 3.8877 -7.7662 -0.6685 19 8 3.1831 -8.5964 -1.2031 20 6 5.3877 -7.8812 -0.7571 21 1 5.9378 -7.5424 0.1208 22 6 6.0338 -7.6579 -2.1259 23 6 5.9605 -9.0675 -1.5354 24 1 5.2525 -9.7647 -1.9833 25 9 7.1506 -9.6338 -1.0661 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 -0.4298 -4.1516 -0.0030 30 1 -1.8893 -6.1325 -0.0046 31 1 -0.9107 -8.3891 -0.0035 32 1 1.5330 -8.6781 -0.0131 33 1 3.8904 -6.1106 0.4820 34 1 5.3737 -7.4282 -2.9625 35 1 7.0091 -7.1719 -2.1489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121088138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:58 Heat of formation + Delta-G solvation = -54.766589 kcal Electronic energy + Delta-G solvation = -20175.876959 eV Core-core repulsion = 16793.349561 eV Total energy + Delta-G solvation = -3382.527398 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.73608 -41.68759 -39.63765 -36.85124 -35.91665 -35.32751 -32.17826 -30.87009 -30.57364 -26.12023 -25.32045 -24.04884 -23.47432 -22.91934 -21.27916 -19.45460 -18.88205 -18.36159 -17.93622 -17.06910 -16.82585 -16.68888 -16.44299 -15.94238 -15.74196 -15.45433 -14.95823 -14.81021 -14.75070 -14.61429 -14.25771 -13.91713 -13.52382 -13.41212 -13.12741 -12.77147 -12.74385 -12.54170 -11.92122 -11.65014 -11.64605 -11.45421 -11.29900 -10.99657 -10.96617 -10.84317 -10.53230 -9.40864 -8.36566 -8.23158 -6.51004 0.14916 0.30744 0.75437 1.27595 1.41255 1.41655 1.53673 1.74182 1.83612 2.34984 2.50059 2.74495 2.99110 3.00952 3.41933 3.49531 3.86156 3.95055 4.00280 4.14168 4.36099 4.45235 4.48573 4.64356 4.77680 4.83740 4.84977 4.89610 5.03745 5.15568 5.25238 5.41366 5.51204 5.53998 5.80834 5.96665 6.25593 6.56260 6.91426 7.18113 8.75505 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.003900 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.472518 B = 7177.885247 C = 8777.501489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.080 3.920 10 S -0.148 6.148 11 C -0.116 4.116 12 C -0.135 4.135 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.113 4.113 16 C 0.142 3.858 17 N -0.654 5.654 18 C 0.548 3.452 19 O -0.551 6.551 20 C -0.209 4.209 21 H 0.157 0.843 22 C -0.143 4.143 23 C 0.051 3.949 24 H 0.149 0.851 25 F -0.186 7.186 26 H 0.271 0.729 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.113 0.887 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.144 0.856 33 H 0.420 0.580 34 H 0.118 0.882 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -15.827 -0.996 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.068 4.068 10 S 0.097 5.903 11 C -0.231 4.231 12 C -0.160 4.160 13 C -0.131 4.131 14 C -0.130 4.130 15 C -0.135 4.135 16 C 0.041 3.959 17 N -0.299 5.299 18 C 0.338 3.662 19 O -0.429 6.429 20 C -0.230 4.230 21 H 0.175 0.825 22 C -0.180 4.180 23 C 0.014 3.986 24 H 0.166 0.834 25 F -0.166 7.166 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.131 0.869 30 H 0.167 0.833 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.259 0.741 34 H 0.136 0.864 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.203 -16.133 -1.366 18.150 hybrid contribution -1.075 1.393 0.427 1.810 sum 7.129 -14.740 -0.939 16.400 Atomic orbital electron populations 1.70051 1.07743 1.28726 1.49517 1.25897 0.95844 1.03033 0.93571 0.85265 0.78579 0.77401 0.78767 1.19488 1.20234 1.18611 1.20952 0.93653 0.89788 1.53615 0.91334 1.21007 0.94684 0.92490 0.98601 1.84663 1.16847 0.97277 1.91483 1.21910 0.97556 0.95948 1.07730 1.21246 0.91951 1.00242 1.02544 1.21347 1.00738 0.91652 0.99362 1.21389 0.94306 0.97911 0.99399 1.21324 0.93765 0.97840 1.00534 1.17302 0.83507 0.91514 1.03547 1.43409 1.05103 1.29966 1.51376 1.19988 0.89813 0.79959 0.76472 1.90675 1.64098 1.41110 1.47014 1.22907 0.91287 1.07194 1.01620 0.82508 1.23837 1.03999 0.96565 0.93602 1.22134 0.85110 0.90752 1.00563 0.83408 1.92816 1.48090 1.86170 1.89548 0.91975 0.96203 0.95969 0.86928 0.83279 0.82276 0.83814 0.74128 0.86362 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.66 13.29 21.45 0.28 -52.38 16 2 C 0.02 0.98 5.46 84.66 0.46 1.45 16 3 Si 0.98 41.96 29.54 68.60 2.03 43.98 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.54 -29.54 9.13 25.60 0.23 -29.31 16 8 H 0.07 3.65 7.71 -2.91 -0.02 3.63 16 9 C 0.08 4.09 4.09 71.23 0.29 4.38 16 10 S -0.15 -6.13 20.73 -56.49 -1.17 -7.30 16 11 C -0.12 -4.35 6.12 22.71 0.14 -4.21 16 12 C -0.14 -4.96 9.36 22.39 0.21 -4.75 16 13 C -0.11 -3.20 10.04 22.28 0.22 -2.97 16 14 C -0.11 -2.82 10.04 22.29 0.22 -2.60 16 15 C -0.11 -3.33 8.70 22.37 0.19 -3.14 16 16 C 0.14 4.61 6.32 38.22 0.24 4.85 16 17 N -0.65 -17.87 5.02 -303.01 -1.52 -19.39 16 18 C 0.55 13.77 7.46 87.66 0.65 14.42 16 19 O -0.55 -16.52 13.68 -3.10 -0.04 -16.56 16 20 C -0.21 -3.70 6.18 -11.54 -0.07 -3.77 16 21 H 0.16 2.15 8.14 -2.39 -0.02 2.13 16 22 C -0.14 -2.10 10.22 30.59 0.31 -1.79 16 23 C 0.05 0.87 7.41 30.59 0.23 1.09 16 24 H 0.15 2.51 7.67 -2.39 -0.02 2.49 16 25 F -0.19 -3.63 17.60 44.97 0.79 -2.83 16 26 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.02 1.08 7.75 -2.39 -0.02 1.07 16 28 H 0.02 1.20 7.75 -2.39 -0.02 1.18 16 29 H 0.11 4.59 5.88 -2.91 -0.02 4.58 16 30 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 31 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.14 4.09 6.20 -2.91 -0.02 4.07 16 33 H 0.42 10.34 7.98 -92.70 -0.74 9.60 16 34 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.36 321.47 4.10 -60.26 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.39 Total: 20.58 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 3.34 Total: -26.36 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.24 Total: -71.76 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.04 Total: -16.56 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.79 Total: -2.83 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: -6.13 SS G_CDS: -1.17 Total: -7.30 kcal Total: -64.36 4.10 -60.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121088138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.491 kcal (2) G-P(sol) polarization free energy of solvation -64.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds