Wall clock time and date at job start Tue Mar 31 2020 07:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48508 * 109.46996 * 270.00023 * 3 2 1 5 5 H 1.48497 * 109.47177 * 29.99409 * 3 2 1 6 6 H 1.48500 * 109.47432 * 149.99941 * 3 2 1 7 7 C 1.37880 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99728 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.76197 * 102.99949 * 180.02562 * 10 9 7 12 12 C 1.38783 * 120.10799 * 359.97438 * 11 10 9 13 13 C 1.38193 * 119.98769 * 180.02562 * 12 11 10 14 14 C 1.38298 * 120.20131 * 0.02562 * 13 12 11 15 15 C 1.38240 * 120.21103 * 359.70194 * 14 13 12 16 16 C 1.38654 * 120.00701 * 0.55303 * 15 14 13 17 17 N 1.40145 * 120.10025 * 179.74499 * 16 15 14 18 18 C 1.34780 * 119.99722 * 24.78471 * 17 16 15 19 19 O 1.21296 * 120.00308 * 5.40641 * 18 17 16 20 20 C 1.50694 * 119.99889 * 185.40957 * 18 17 16 21 21 H 1.09001 * 115.55161 * 325.58381 * 20 18 17 22 22 C 1.52998 * 117.49931 * 111.24957 * 20 18 17 23 23 C 1.52998 * 117.50097 * 179.91095 * 20 18 17 24 24 H 1.09006 * 117.49715 * 0.02562 * 23 20 18 25 25 F 1.39903 * 117.50141 * 145.02269 * 23 20 18 26 26 H 0.96998 * 120.00047 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47271 * 59.99817 * 9 7 2 28 28 H 1.09003 * 109.47519 * 300.00176 * 9 7 2 29 29 H 1.07998 * 120.00449 * 359.97438 * 12 11 10 30 30 H 1.08004 * 119.89676 * 180.02562 * 13 12 11 31 31 H 1.08004 * 119.89376 * 180.02562 * 14 13 12 32 32 H 1.07998 * 120.00196 * 180.28255 * 15 14 13 33 33 H 0.97001 * 119.99910 * 204.50273 * 17 16 15 34 34 H 1.09012 * 117.49829 * 214.98242 * 22 20 18 35 35 H 1.08996 * 117.50256 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 16 2.4298 -3.8780 0.0005 11 6 1.3824 -5.2948 -0.0002 12 6 0.0032 -5.1410 -0.0001 13 6 -0.8160 -6.2539 -0.0002 14 6 -0.2658 -7.5228 0.0002 15 6 1.1070 -7.6856 -0.0056 16 6 1.9371 -6.5750 -0.0002 17 7 3.3290 -6.7379 -0.0007 18 6 3.8753 -7.8665 -0.4952 19 8 3.1713 -8.6979 -1.0285 20 6 5.3607 -8.0954 -0.3855 21 1 5.9810 -7.2026 -0.4636 22 6 5.8368 -9.2065 0.5524 23 6 5.9195 -9.3968 -0.9642 24 1 5.2128 -10.0872 -1.4247 25 9 7.1879 -9.3499 -1.5527 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 -0.4299 -4.1516 0.0009 30 1 -1.8892 -6.1325 -0.0005 31 1 -0.9106 -8.3891 -0.0003 32 1 1.5331 -8.6780 -0.0099 33 1 3.8995 -6.0367 0.3511 34 1 6.7707 -9.0447 1.0910 35 1 5.0758 -9.7716 1.0905 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121088139.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:00 Heat of formation + Delta-G solvation = -37.592549 kcal Electronic energy + Delta-G solvation = -20138.047052 eV Core-core repulsion = 16756.264376 eV Total energy + Delta-G solvation = -3381.782676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.96281 -40.63693 -38.44610 -36.03676 -34.77019 -33.31175 -30.82060 -29.60953 -28.65422 -25.09551 -23.46038 -22.88637 -22.70473 -21.72241 -20.19690 -18.26792 -17.76313 -16.84643 -16.34846 -16.15986 -15.80894 -15.27755 -15.10335 -14.95216 -14.45175 -14.22877 -13.97925 -13.42473 -13.16859 -13.04442 -12.81511 -12.65956 -12.42760 -12.28917 -11.82294 -11.30036 -10.99494 -10.93119 -10.81214 -10.55556 -10.50356 -10.14107 -9.80744 -9.74790 -9.29317 -9.22061 -8.69311 -8.08217 -6.66615 -6.32591 -4.38785 1.38218 1.62086 2.26224 2.32547 2.83243 3.18587 3.23014 3.24939 3.28557 3.51904 3.77889 4.02641 4.18917 4.24285 4.28522 4.64772 4.75134 5.05162 5.16366 5.22766 5.28164 5.40490 5.52034 5.67560 5.72573 5.75714 6.13315 6.38192 6.48499 6.63385 6.79753 6.88210 6.91539 7.20931 7.35443 7.59818 7.82438 7.95728 8.62112 9.25675 10.78533 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.003754 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.351213 B = 7456.396697 C = 8959.190026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.078 3.922 10 S -0.171 6.171 11 C -0.094 4.094 12 C -0.114 4.114 13 C -0.116 4.116 14 C -0.122 4.122 15 C -0.117 4.117 16 C 0.147 3.853 17 N -0.651 5.651 18 C 0.547 3.453 19 O -0.524 6.524 20 C -0.206 4.206 21 H 0.139 0.861 22 C -0.158 4.158 23 C 0.053 3.947 24 H 0.149 0.851 25 F -0.179 7.179 26 H 0.268 0.732 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.416 0.584 34 H 0.118 0.882 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -16.582 1.951 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.068 4.068 10 S 0.076 5.924 11 C -0.210 4.210 12 C -0.139 4.139 13 C -0.137 4.137 14 C -0.144 4.144 15 C -0.139 4.139 16 C 0.046 3.954 17 N -0.294 5.294 18 C 0.334 3.666 19 O -0.400 6.400 20 C -0.228 4.228 21 H 0.157 0.843 22 C -0.196 4.196 23 C 0.017 3.983 24 H 0.166 0.834 25 F -0.159 7.159 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.154 0.846 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.160 0.840 33 H 0.254 0.746 34 H 0.137 0.863 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.025 -16.860 1.573 18.332 hybrid contribution -0.667 1.462 0.101 1.610 sum 6.358 -15.397 1.674 16.742 Atomic orbital electron populations 1.69937 1.06162 1.27658 1.48816 1.24948 0.95002 0.99337 0.94299 0.86317 0.79711 0.81986 0.78467 1.20230 1.20842 1.19489 1.20602 0.93458 0.88500 1.53464 0.91341 1.21376 0.94093 0.90414 1.00956 1.85029 1.18449 0.98310 1.90654 1.21819 0.97517 0.96029 1.05621 1.21240 0.91520 1.00114 1.01031 1.21051 0.99577 0.92272 1.00767 1.20947 0.94362 0.97087 1.01997 1.21185 0.93106 0.98207 1.01361 1.17214 0.82055 0.92336 1.03746 1.43406 1.05937 1.19908 1.60179 1.19450 0.88331 0.81452 0.77359 1.90671 1.62407 1.44662 1.42286 1.22913 0.94562 0.97040 1.08263 0.84331 1.23724 1.04356 0.98730 0.92756 1.22101 0.82718 0.99114 0.94384 0.83419 1.92832 1.40997 1.96990 1.85052 0.92252 0.93672 0.93669 0.84637 0.86030 0.86065 0.83971 0.74620 0.86342 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.52 -13.92 9.13 -34.44 -0.31 -14.23 16 8 H 0.07 1.81 7.71 -52.49 -0.40 1.40 16 9 C 0.08 1.92 4.09 36.01 0.15 2.07 16 10 S -0.17 -3.48 20.55 -107.50 -2.21 -5.69 16 11 C -0.09 -1.76 6.12 -38.90 -0.24 -2.00 16 12 C -0.11 -2.06 9.36 -39.40 -0.37 -2.43 16 13 C -0.12 -1.77 10.04 -39.58 -0.40 -2.16 16 14 C -0.12 -1.75 10.04 -39.56 -0.40 -2.14 16 15 C -0.12 -1.83 8.72 -39.43 -0.34 -2.17 16 16 C 0.15 2.46 6.44 -83.43 -0.54 1.92 16 17 N -0.65 -9.26 5.17 -9.71 -0.05 -9.31 16 18 C 0.55 7.15 7.42 -10.99 -0.08 7.07 16 19 O -0.52 -8.07 13.42 5.54 0.07 -8.00 16 20 C -0.21 -1.99 6.17 -91.78 -0.57 -2.55 16 21 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 22 C -0.16 -1.16 10.22 -26.69 -0.27 -1.43 16 23 C 0.05 0.49 7.41 -26.69 -0.20 0.29 16 24 H 0.15 1.31 7.67 -51.93 -0.40 0.91 16 25 F -0.18 -1.92 17.60 2.25 0.04 -1.88 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.05 1.16 7.75 -51.92 -0.40 0.76 16 28 H 0.05 1.15 7.75 -51.92 -0.40 0.75 16 29 H 0.14 2.60 5.88 -52.49 -0.31 2.29 16 30 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.14 2.14 5.78 -52.49 -0.30 1.84 16 33 H 0.42 5.43 7.65 -40.82 -0.31 5.12 16 34 H 0.12 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -29.64 320.56 -9.05 -38.68 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.78 Total: 5.94 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -3.67 Total: -16.02 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.69 Total: -33.37 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.07 Total: -8.00 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.21 Total: -5.69 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.64 -9.05 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121088139.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.092 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds