Wall clock time and date at job start Tue Mar 31 2020 07:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48508 * 109.46996 * 270.00023 * 3 2 1 5 5 H 1.48497 * 109.47177 * 29.99409 * 3 2 1 6 6 H 1.48500 * 109.47432 * 149.99941 * 3 2 1 7 7 C 1.37880 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99728 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.76197 * 102.99949 * 180.02562 * 10 9 7 12 12 C 1.38783 * 120.10799 * 359.97438 * 11 10 9 13 13 C 1.38193 * 119.98769 * 180.02562 * 12 11 10 14 14 C 1.38298 * 120.20131 * 0.02562 * 13 12 11 15 15 C 1.38240 * 120.21103 * 359.70194 * 14 13 12 16 16 C 1.38654 * 120.00701 * 0.55303 * 15 14 13 17 17 N 1.40145 * 120.10025 * 179.74499 * 16 15 14 18 18 C 1.34780 * 119.99722 * 24.78471 * 17 16 15 19 19 O 1.21296 * 120.00308 * 5.40641 * 18 17 16 20 20 C 1.50694 * 119.99889 * 185.40957 * 18 17 16 21 21 H 1.09001 * 115.55161 * 325.58381 * 20 18 17 22 22 C 1.52998 * 117.49931 * 111.24957 * 20 18 17 23 23 C 1.52998 * 117.50097 * 179.91095 * 20 18 17 24 24 H 1.09006 * 117.49715 * 0.02562 * 23 20 18 25 25 F 1.39903 * 117.50141 * 145.02269 * 23 20 18 26 26 H 0.96998 * 120.00047 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47271 * 59.99817 * 9 7 2 28 28 H 1.09003 * 109.47519 * 300.00176 * 9 7 2 29 29 H 1.07998 * 120.00449 * 359.97438 * 12 11 10 30 30 H 1.08004 * 119.89676 * 180.02562 * 13 12 11 31 31 H 1.08004 * 119.89376 * 180.02562 * 14 13 12 32 32 H 1.07998 * 120.00196 * 180.28255 * 15 14 13 33 33 H 0.97001 * 119.99910 * 204.50273 * 17 16 15 34 34 H 1.09012 * 117.49829 * 214.98242 * 22 20 18 35 35 H 1.08996 * 117.50256 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 16 2.4298 -3.8780 0.0005 11 6 1.3824 -5.2948 -0.0002 12 6 0.0032 -5.1410 -0.0001 13 6 -0.8160 -6.2539 -0.0002 14 6 -0.2658 -7.5228 0.0002 15 6 1.1070 -7.6856 -0.0056 16 6 1.9371 -6.5750 -0.0002 17 7 3.3290 -6.7379 -0.0007 18 6 3.8753 -7.8665 -0.4952 19 8 3.1713 -8.6979 -1.0285 20 6 5.3607 -8.0954 -0.3855 21 1 5.9810 -7.2026 -0.4636 22 6 5.8368 -9.2065 0.5524 23 6 5.9195 -9.3968 -0.9642 24 1 5.2128 -10.0872 -1.4247 25 9 7.1879 -9.3499 -1.5527 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 -0.4299 -4.1516 0.0009 30 1 -1.8892 -6.1325 -0.0005 31 1 -0.9106 -8.3891 -0.0003 32 1 1.5331 -8.6780 -0.0099 33 1 3.8995 -6.0367 0.3511 34 1 6.7707 -9.0447 1.0910 35 1 5.0758 -9.7716 1.0905 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121088139.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:00 Heat of formation + Delta-G solvation = -53.409745 kcal Electronic energy + Delta-G solvation = -20138.732937 eV Core-core repulsion = 16756.264376 eV Total energy + Delta-G solvation = -3382.468561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.73351 -41.74863 -39.62939 -36.85642 -35.94626 -35.33794 -32.17531 -30.88263 -30.58323 -26.11399 -25.33137 -24.11796 -23.46072 -22.92792 -21.24023 -19.46045 -18.90154 -18.37198 -17.96834 -17.09798 -16.82603 -16.69741 -16.37968 -15.99005 -15.72878 -15.42488 -15.05312 -14.81198 -14.74580 -14.57874 -14.26432 -13.98278 -13.52216 -13.40515 -13.12910 -12.77824 -12.74530 -12.54606 -11.92572 -11.66733 -11.65390 -11.60306 -11.26383 -11.01491 -10.93375 -10.84433 -10.54086 -9.35489 -8.37305 -8.22856 -6.51858 0.14088 0.30655 0.73738 1.27761 1.40609 1.41129 1.53110 1.72192 1.84109 2.34365 2.48965 2.76335 2.98318 3.00996 3.39052 3.48807 3.85855 3.96240 4.02355 4.14055 4.35893 4.44567 4.47538 4.64384 4.78204 4.83602 4.83987 4.88960 5.04400 5.12630 5.25877 5.40520 5.51095 5.54123 5.79834 5.97699 6.24681 6.55288 6.87896 7.17283 8.74769 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.003754 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.351213 B = 7456.396697 C = 8959.190026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.082 3.918 10 S -0.156 6.156 11 C -0.123 4.123 12 C -0.132 4.132 13 C -0.116 4.116 14 C -0.105 4.105 15 C -0.124 4.124 16 C 0.147 3.853 17 N -0.653 5.653 18 C 0.548 3.452 19 O -0.547 6.547 20 C -0.216 4.216 21 H 0.151 0.849 22 C -0.130 4.130 23 C 0.045 3.955 24 H 0.149 0.851 25 F -0.188 7.188 26 H 0.272 0.728 27 H 0.020 0.980 28 H 0.023 0.977 29 H 0.112 0.888 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.152 0.848 33 H 0.420 0.580 34 H 0.140 0.860 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.274 -17.985 2.436 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.065 4.065 10 S 0.089 5.911 11 C -0.238 4.238 12 C -0.156 4.156 13 C -0.136 4.136 14 C -0.126 4.126 15 C -0.145 4.145 16 C 0.046 3.954 17 N -0.296 5.296 18 C 0.338 3.662 19 O -0.425 6.425 20 C -0.237 4.237 21 H 0.168 0.832 22 C -0.168 4.168 23 C 0.009 3.991 24 H 0.166 0.834 25 F -0.169 7.169 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.130 0.870 30 H 0.167 0.833 31 H 0.178 0.822 32 H 0.170 0.830 33 H 0.258 0.742 34 H 0.158 0.842 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.981 -18.290 2.061 20.061 hybrid contribution -1.018 1.709 -0.064 1.990 sum 6.963 -16.581 1.997 18.094 Atomic orbital electron populations 1.70049 1.07731 1.28749 1.49471 1.25894 0.95854 1.03028 0.93546 0.85262 0.78583 0.77390 0.78752 1.19544 1.20139 1.18618 1.20952 0.93652 0.89803 1.53687 0.91369 1.20999 0.94556 0.92303 0.98636 1.84606 1.17194 0.97614 1.91701 1.21810 0.97580 0.95759 1.08636 1.21229 0.91895 1.00249 1.02266 1.21336 1.00707 0.91698 0.99882 1.21399 0.94341 0.97865 0.99017 1.21446 0.93732 0.98105 1.01214 1.17385 0.83479 0.91759 1.02800 1.43502 1.05103 1.20619 1.60423 1.19993 0.89648 0.80422 0.76171 1.90648 1.63430 1.45263 1.43209 1.22906 0.92089 0.98217 1.10488 0.83155 1.23884 1.05172 0.96157 0.91573 1.22207 0.82271 0.98656 0.96009 0.83391 1.92813 1.41607 1.96998 1.85444 0.91947 0.96211 0.95860 0.86968 0.83329 0.82197 0.83039 0.74174 0.84177 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.87 13.29 21.45 0.28 -52.59 16 2 C 0.02 1.00 5.46 84.66 0.46 1.47 16 3 Si 0.98 42.25 29.54 68.60 2.03 44.28 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.54 -29.83 9.13 25.60 0.23 -29.60 16 8 H 0.07 3.66 7.71 -2.91 -0.02 3.64 16 9 C 0.08 4.27 4.09 71.24 0.29 4.56 16 10 S -0.16 -6.57 20.55 -56.49 -1.16 -7.73 16 11 C -0.12 -4.65 6.12 22.71 0.14 -4.51 16 12 C -0.13 -4.88 9.36 22.39 0.21 -4.67 16 13 C -0.12 -3.37 10.04 22.27 0.22 -3.15 16 14 C -0.11 -2.72 10.04 22.28 0.22 -2.50 16 15 C -0.12 -3.62 8.72 22.37 0.20 -3.43 16 16 C 0.15 4.81 6.44 38.22 0.25 5.06 16 17 N -0.65 -18.05 5.17 -303.00 -1.57 -19.61 16 18 C 0.55 13.60 7.42 87.65 0.65 14.25 16 19 O -0.55 -16.09 13.42 -3.08 -0.04 -16.13 16 20 C -0.22 -3.74 6.17 -11.54 -0.07 -3.81 16 21 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 22 C -0.13 -1.53 10.22 30.62 0.31 -1.21 16 23 C 0.04 0.74 7.41 30.62 0.23 0.97 16 24 H 0.15 2.42 7.67 -2.38 -0.02 2.40 16 25 F -0.19 -3.75 17.60 44.97 0.79 -2.96 16 26 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.02 1.09 7.75 -2.39 -0.02 1.07 16 28 H 0.02 1.27 7.75 -2.39 -0.02 1.25 16 29 H 0.11 4.62 5.88 -2.91 -0.02 4.60 16 30 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.15 4.22 5.78 -2.91 -0.02 4.20 16 33 H 0.42 10.73 7.65 -92.71 -0.71 10.02 16 34 H 0.14 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -65.26 320.56 4.10 -61.16 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.42 Total: 20.15 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.34 Total: -26.57 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.28 Total: -72.20 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.04 Total: -16.13 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.79 Total: -2.96 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: -6.57 SS G_CDS: -1.16 Total: -7.73 kcal Total: -65.26 4.10 -61.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121088139.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.752 kcal (2) G-P(sol) polarization free energy of solvation -65.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds