Wall clock time and date at job start Tue Mar 31 2020 07:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48503 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46974 * 299.99516 * 3 2 1 6 6 H 1.48493 * 109.47491 * 59.99443 * 3 2 1 7 7 C 1.37875 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00321 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00358 * 0.02562 * 7 2 1 10 10 S 1.81396 * 109.47513 * 179.97438 * 9 7 2 11 11 C 1.76194 * 103.00056 * 180.02562 * 10 9 7 12 12 C 1.38794 * 120.10725 * 0.02562 * 11 10 9 13 13 C 1.38194 * 119.98891 * 179.97438 * 12 11 10 14 14 C 1.38292 * 120.20238 * 0.02639 * 13 12 11 15 15 C 1.38250 * 120.21005 * 359.67954 * 14 13 12 16 16 C 1.38655 * 120.00837 * 0.59346 * 15 14 13 17 17 N 1.40136 * 120.09816 * 179.70109 * 16 15 14 18 18 C 1.34775 * 120.00167 * 34.67360 * 17 16 15 19 19 O 1.21296 * 119.99855 * 355.52292 * 18 17 16 20 20 C 1.50705 * 119.99990 * 175.51942 * 18 17 16 21 21 H 1.08999 * 115.54916 * 34.42247 * 20 18 17 22 22 C 1.53004 * 117.49667 * 180.08569 * 20 18 17 23 23 C 1.52996 * 117.49878 * 248.74824 * 20 18 17 24 24 H 1.09004 * 117.49659 * 145.00127 * 23 20 18 25 25 F 1.39894 * 117.50256 * 359.97438 * 23 20 18 26 26 H 0.96998 * 120.00097 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46553 * 59.99713 * 9 7 2 28 28 H 1.08996 * 109.46687 * 300.00066 * 9 7 2 29 29 H 1.08004 * 119.99782 * 359.95983 * 12 11 10 30 30 H 1.07997 * 119.89419 * 179.97438 * 13 12 11 31 31 H 1.08005 * 119.89329 * 179.97438 * 14 13 12 32 32 H 1.08002 * 119.99673 * 180.30294 * 15 14 13 33 33 H 0.97002 * 119.99789 * 214.67083 * 17 16 15 34 34 H 1.08994 * 117.49779 * 215.00337 * 22 20 18 35 35 H 1.08993 * 117.49742 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0005 11 6 1.3824 -5.2948 -0.0002 12 6 0.0031 -5.1410 -0.0012 13 6 -0.8161 -6.2540 -0.0023 14 6 -0.2659 -7.5227 -0.0020 15 6 1.1070 -7.6856 -0.0071 16 6 1.9371 -6.5750 -0.0003 17 7 3.3289 -6.7380 0.0008 18 6 3.8876 -7.7663 -0.6677 19 8 3.1830 -8.5964 -1.2022 20 6 5.3876 -7.8847 -0.7512 21 1 5.9356 -7.5459 0.1280 22 6 5.9604 -9.0732 -1.5260 23 6 6.0387 -7.6637 -2.1180 24 1 7.0151 -7.1795 -2.1379 25 9 5.1961 -7.3677 -3.1947 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 -0.4299 -4.1516 -0.0008 30 1 -1.8892 -6.1325 -0.0027 31 1 -0.9108 -8.3891 -0.0024 32 1 1.5330 -8.6781 -0.0118 33 1 3.8903 -6.1106 0.4827 34 1 6.8852 -9.5163 -1.1565 35 1 5.2523 -9.7692 -1.9756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121088140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:03 Heat of formation + Delta-G solvation = -36.834849 kcal Electronic energy + Delta-G solvation = -20438.221039 eV Core-core repulsion = 17056.471220 eV Total energy + Delta-G solvation = -3381.749820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.79786 -40.43367 -38.35849 -36.00079 -34.65809 -33.28571 -30.77742 -29.55731 -28.62171 -25.08622 -23.40473 -22.70908 -22.68217 -21.66612 -20.07903 -18.11059 -17.69804 -16.81837 -16.40286 -16.28229 -15.58922 -15.22199 -15.02170 -14.68170 -14.38747 -14.24255 -13.65694 -13.46463 -13.08298 -12.98390 -12.95410 -12.41049 -12.36696 -12.23242 -11.78566 -11.26579 -10.99490 -10.79530 -10.77621 -10.46026 -10.31809 -10.06221 -9.78296 -9.70574 -9.24464 -9.16433 -8.67325 -8.08194 -6.62547 -6.30313 -4.36182 1.46083 1.67206 2.32673 2.36577 2.96137 3.18800 3.26467 3.31109 3.35659 3.57895 3.81128 4.06778 4.21910 4.26367 4.39633 4.67712 4.77655 5.07474 5.24772 5.29283 5.33387 5.46290 5.56317 5.76058 5.79192 5.81434 6.18742 6.46933 6.52600 6.69628 6.83492 6.91521 6.95141 7.25496 7.42886 7.62474 7.85333 8.09151 8.64951 9.28084 10.80955 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.004279 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.432266 B = 6542.628989 C = 7978.350207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.075 3.925 10 S -0.165 6.165 11 C -0.090 4.090 12 C -0.118 4.118 13 C -0.113 4.113 14 C -0.126 4.126 15 C -0.107 4.107 16 C 0.144 3.856 17 N -0.655 5.655 18 C 0.545 3.455 19 O -0.520 6.520 20 C -0.208 4.208 21 H 0.141 0.859 22 C -0.158 4.158 23 C 0.049 3.951 24 H 0.145 0.855 25 F -0.173 7.173 26 H 0.267 0.733 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.414 0.586 34 H 0.120 0.880 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.803 -15.673 0.695 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.072 4.072 10 S 0.081 5.919 11 C -0.205 4.205 12 C -0.143 4.143 13 C -0.133 4.133 14 C -0.148 4.148 15 C -0.128 4.128 16 C 0.044 3.956 17 N -0.299 5.299 18 C 0.332 3.668 19 O -0.395 6.395 20 C -0.230 4.230 21 H 0.159 0.841 22 C -0.196 4.196 23 C 0.012 3.988 24 H 0.162 0.838 25 F -0.153 7.153 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.153 0.847 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.154 0.846 33 H 0.251 0.749 34 H 0.138 0.862 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.431 -15.935 0.264 18.519 hybrid contribution -0.904 1.296 0.247 1.599 sum 8.527 -14.639 0.511 16.949 Atomic orbital electron populations 1.69948 1.06161 1.27506 1.48983 1.24949 0.94996 0.99334 0.94352 0.86268 0.80018 0.82357 0.77860 1.19389 1.20611 1.20627 1.20640 0.93471 0.88491 1.53219 0.91310 1.21384 0.94249 0.90606 1.00934 1.85077 1.18235 0.98070 1.90478 1.21914 0.97478 0.96214 1.04913 1.21249 0.91568 1.00093 1.01371 1.21046 0.99553 0.92258 1.00445 1.20937 0.94353 0.97101 1.02363 1.21078 0.93098 0.97982 1.00655 1.17158 0.82175 0.92090 1.04205 1.43316 1.05878 1.29477 1.51252 1.19444 0.88688 0.81040 0.77645 1.90687 1.63018 1.40395 1.45421 1.22976 0.93867 1.07265 0.98856 0.84131 1.23703 1.03646 0.91418 1.00797 1.22136 0.93620 1.00975 0.82019 0.83773 1.92885 1.72877 1.93906 1.55620 0.92337 0.93692 0.93705 0.84655 0.86028 0.86089 0.84574 0.74920 0.86172 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.03 9.13 -34.44 -0.31 -14.34 16 8 H 0.07 1.84 7.71 -52.48 -0.40 1.44 16 9 C 0.07 1.87 4.09 36.01 0.15 2.02 16 10 S -0.17 -3.47 20.73 -107.50 -2.23 -5.70 16 11 C -0.09 -1.74 6.12 -38.90 -0.24 -1.98 16 12 C -0.12 -2.21 9.36 -39.39 -0.37 -2.57 16 13 C -0.11 -1.78 10.04 -39.58 -0.40 -2.18 16 14 C -0.13 -1.89 10.04 -39.56 -0.40 -2.29 16 15 C -0.11 -1.76 8.70 -39.42 -0.34 -2.11 16 16 C 0.14 2.53 6.32 -83.43 -0.53 2.00 16 17 N -0.65 -9.88 5.02 -9.71 -0.05 -9.93 16 18 C 0.54 7.87 7.09 -10.98 -0.08 7.79 16 19 O -0.52 -9.02 13.68 5.54 0.08 -8.94 16 20 C -0.21 -2.02 6.19 -91.77 -0.57 -2.59 16 21 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 22 C -0.16 -1.28 10.03 -26.69 -0.27 -1.55 16 23 C 0.05 0.47 7.83 -26.69 -0.21 0.26 16 24 H 0.15 0.84 8.14 -51.93 -0.42 0.41 16 25 F -0.17 -2.48 17.13 2.25 0.04 -2.44 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.04 1.18 7.75 -51.92 -0.40 0.78 16 28 H 0.04 1.16 7.75 -51.93 -0.40 0.76 16 29 H 0.14 2.67 5.88 -52.48 -0.31 2.36 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.14 2.20 6.20 -52.49 -0.33 1.88 16 33 H 0.41 5.52 7.98 -40.82 -0.33 5.19 16 34 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.12 1.20 7.67 -51.93 -0.40 0.80 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -31.79 320.89 -9.09 -40.87 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.82 Total: 5.74 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -3.66 Total: -15.79 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.69 Total: -34.23 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.23 Total: -5.70 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.79 -9.09 -40.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121088140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.036 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds