Wall clock time and date at job start Tue Mar 31 2020 07:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48503 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46974 * 299.99516 * 3 2 1 6 6 H 1.48493 * 109.47491 * 59.99443 * 3 2 1 7 7 C 1.37875 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00321 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00358 * 0.02562 * 7 2 1 10 10 S 1.81396 * 109.47513 * 179.97438 * 9 7 2 11 11 C 1.76194 * 103.00056 * 180.02562 * 10 9 7 12 12 C 1.38794 * 120.10725 * 0.02562 * 11 10 9 13 13 C 1.38194 * 119.98891 * 179.97438 * 12 11 10 14 14 C 1.38292 * 120.20238 * 0.02639 * 13 12 11 15 15 C 1.38250 * 120.21005 * 359.67954 * 14 13 12 16 16 C 1.38655 * 120.00837 * 0.59346 * 15 14 13 17 17 N 1.40136 * 120.09816 * 179.70109 * 16 15 14 18 18 C 1.34775 * 120.00167 * 34.67360 * 17 16 15 19 19 O 1.21296 * 119.99855 * 355.52292 * 18 17 16 20 20 C 1.50705 * 119.99990 * 175.51942 * 18 17 16 21 21 H 1.08999 * 115.54916 * 34.42247 * 20 18 17 22 22 C 1.53004 * 117.49667 * 180.08569 * 20 18 17 23 23 C 1.52996 * 117.49878 * 248.74824 * 20 18 17 24 24 H 1.09004 * 117.49659 * 145.00127 * 23 20 18 25 25 F 1.39894 * 117.50256 * 359.97438 * 23 20 18 26 26 H 0.96998 * 120.00097 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46553 * 59.99713 * 9 7 2 28 28 H 1.08996 * 109.46687 * 300.00066 * 9 7 2 29 29 H 1.08004 * 119.99782 * 359.95983 * 12 11 10 30 30 H 1.07997 * 119.89419 * 179.97438 * 13 12 11 31 31 H 1.08005 * 119.89329 * 179.97438 * 14 13 12 32 32 H 1.08002 * 119.99673 * 180.30294 * 15 14 13 33 33 H 0.97002 * 119.99789 * 214.67083 * 17 16 15 34 34 H 1.08994 * 117.49779 * 215.00337 * 22 20 18 35 35 H 1.08993 * 117.49742 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0005 11 6 1.3824 -5.2948 -0.0002 12 6 0.0031 -5.1410 -0.0012 13 6 -0.8161 -6.2540 -0.0023 14 6 -0.2659 -7.5227 -0.0020 15 6 1.1070 -7.6856 -0.0071 16 6 1.9371 -6.5750 -0.0003 17 7 3.3289 -6.7380 0.0008 18 6 3.8876 -7.7663 -0.6677 19 8 3.1830 -8.5964 -1.2022 20 6 5.3876 -7.8847 -0.7512 21 1 5.9356 -7.5459 0.1280 22 6 5.9604 -9.0732 -1.5260 23 6 6.0387 -7.6637 -2.1180 24 1 7.0151 -7.1795 -2.1379 25 9 5.1961 -7.3677 -3.1947 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 -0.4299 -4.1516 -0.0008 30 1 -1.8892 -6.1325 -0.0027 31 1 -0.9108 -8.3891 -0.0024 32 1 1.5330 -8.6781 -0.0118 33 1 3.8903 -6.1106 0.4827 34 1 6.8852 -9.5163 -1.1565 35 1 5.2523 -9.7692 -1.9756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121088140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:02 Heat of formation + Delta-G solvation = -55.246973 kcal Electronic energy + Delta-G solvation = -20439.019449 eV Core-core repulsion = 17056.471220 eV Total energy + Delta-G solvation = -3382.548229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.72699 -41.62562 -39.60435 -36.84103 -35.91908 -35.33674 -32.19943 -30.89299 -30.59071 -26.14954 -25.33094 -24.06525 -23.36431 -22.94831 -21.19076 -19.41798 -18.82352 -18.37259 -17.94674 -17.37571 -16.83396 -16.66574 -16.30389 -15.93780 -15.65377 -15.47388 -14.86107 -14.81594 -14.70215 -14.61977 -14.27211 -13.95743 -13.84219 -13.17632 -13.05855 -12.79734 -12.76425 -12.55235 -11.93505 -11.63117 -11.57525 -11.41910 -11.20130 -11.00534 -10.97656 -10.85884 -10.54931 -9.42082 -8.37149 -8.24575 -6.51724 0.13687 0.28713 0.73909 1.26828 1.40097 1.40763 1.54592 1.75122 1.90971 2.34610 2.56518 2.74175 2.98461 3.10290 3.46215 3.53814 3.84526 4.03567 4.08788 4.14526 4.34224 4.43334 4.47111 4.75796 4.79941 4.83020 4.83496 4.88129 5.10786 5.14085 5.23710 5.40409 5.49252 5.52910 5.79829 5.95150 6.27150 6.55599 6.95046 7.17413 8.75289 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.004279 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.432266 B = 6542.628989 C = 7978.350207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.018 3.982 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.079 3.921 10 S -0.149 6.149 11 C -0.118 4.118 12 C -0.135 4.135 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.115 4.115 16 C 0.141 3.859 17 N -0.655 5.655 18 C 0.537 3.463 19 O -0.555 6.555 20 C -0.215 4.215 21 H 0.180 0.820 22 C -0.141 4.141 23 C 0.034 3.966 24 H 0.187 0.813 25 F -0.208 7.208 26 H 0.271 0.729 27 H 0.018 0.982 28 H 0.024 0.976 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.142 0.858 33 H 0.421 0.579 34 H 0.164 0.836 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 -16.743 1.136 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.068 4.068 10 S 0.096 5.904 11 C -0.233 4.233 12 C -0.160 4.160 13 C -0.131 4.131 14 C -0.130 4.130 15 C -0.137 4.137 16 C 0.040 3.960 17 N -0.300 5.300 18 C 0.326 3.674 19 O -0.432 6.432 20 C -0.236 4.236 21 H 0.197 0.803 22 C -0.178 4.178 23 C -0.002 4.002 24 H 0.204 0.796 25 F -0.188 7.188 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.132 0.868 30 H 0.169 0.831 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.259 0.741 34 H 0.182 0.818 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.190 -17.028 0.713 20.388 hybrid contribution -1.516 1.439 0.104 2.092 sum 9.674 -15.589 0.817 18.365 Atomic orbital electron populations 1.70059 1.07774 1.28687 1.49563 1.25910 0.95862 1.03083 0.93538 0.85192 0.78904 0.77592 0.78154 1.18523 1.20006 1.19753 1.20972 0.93642 0.89721 1.53567 0.91340 1.21022 0.94695 0.92491 0.98599 1.84650 1.16968 0.97298 1.91505 1.21925 0.97626 0.95969 1.07795 1.21257 0.91915 1.00288 1.02523 1.21344 1.00771 0.91592 0.99432 1.21386 0.94235 0.97983 0.99434 1.21313 0.93857 0.97791 1.00711 1.17348 0.83728 0.91565 1.03308 1.43432 1.05040 1.30005 1.51532 1.20336 0.90780 0.79916 0.76342 1.90657 1.64434 1.41521 1.46636 1.23134 0.90599 1.09193 1.00674 0.80282 1.23834 1.04493 0.90286 0.99182 1.22836 0.94323 1.02609 0.80400 0.79608 1.92810 1.74244 1.94289 1.57482 0.91960 0.96340 0.95826 0.86821 0.83130 0.82235 0.84033 0.74122 0.81791 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.37 13.29 21.45 0.28 -53.09 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.98 42.53 29.54 68.60 2.03 44.55 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.04 9.13 25.60 0.23 -29.80 16 8 H 0.07 3.72 7.71 -2.91 -0.02 3.70 16 9 C 0.08 4.18 4.09 71.24 0.29 4.47 16 10 S -0.15 -6.47 20.73 -56.49 -1.17 -7.65 16 11 C -0.12 -4.68 6.12 22.71 0.14 -4.54 16 12 C -0.14 -5.21 9.36 22.39 0.21 -5.00 16 13 C -0.11 -3.41 10.04 22.27 0.22 -3.19 16 14 C -0.11 -3.06 10.04 22.29 0.22 -2.84 16 15 C -0.12 -3.69 8.70 22.37 0.19 -3.49 16 16 C 0.14 4.96 6.32 38.22 0.24 5.20 16 17 N -0.66 -19.48 5.02 -303.00 -1.52 -21.00 16 18 C 0.54 15.05 7.09 87.66 0.62 15.68 16 19 O -0.55 -19.12 13.68 -3.08 -0.04 -19.16 16 20 C -0.22 -3.65 6.19 -11.54 -0.07 -3.72 16 21 H 0.18 1.58 8.14 -2.39 -0.02 1.56 16 22 C -0.14 -1.89 10.03 30.62 0.31 -1.58 16 23 C 0.03 0.57 7.83 30.62 0.24 0.81 16 24 H 0.19 1.43 8.14 -2.38 -0.02 1.41 16 25 F -0.21 -5.91 17.13 44.97 0.77 -5.14 16 26 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.02 1.04 7.75 -2.39 -0.02 1.02 16 28 H 0.02 1.31 7.75 -2.39 -0.02 1.29 16 29 H 0.11 4.82 5.88 -2.91 -0.02 4.80 16 30 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 31 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.14 4.42 6.20 -2.91 -0.02 4.40 16 33 H 0.42 10.97 7.98 -92.71 -0.74 10.23 16 34 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 1.80 7.67 -2.39 -0.02 1.78 16 Total: -1.00 -72.32 320.89 4.06 -68.26 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.39 Total: 19.81 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.32 Total: -26.59 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -1.24 Total: -74.09 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.04 Total: -19.16 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.77 Total: -5.14 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -1.17 Total: -7.65 kcal Total: -72.32 4.06 -68.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121088140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.018 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds