Wall clock time and date at job start Tue Mar 31 2020 07:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48510 * 109.46950 * 90.00174 * 3 2 1 5 5 H 1.48506 * 109.47141 * 330.00467 * 3 2 1 6 6 H 1.48503 * 109.47498 * 210.00112 * 3 2 1 7 7 C 1.37880 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00339 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99709 * 0.02562 * 7 2 1 10 10 S 1.81402 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.76198 * 103.00062 * 179.97438 * 10 9 7 12 12 C 1.38786 * 120.10112 * 359.97438 * 11 10 9 13 13 C 1.38199 * 119.98832 * 180.02562 * 12 11 10 14 14 C 1.38299 * 120.19712 * 359.97438 * 13 12 11 15 15 C 1.38248 * 120.21371 * 0.03540 * 14 13 12 16 16 C 1.38655 * 120.00350 * 359.68664 * 15 14 13 17 17 N 1.40142 * 120.09582 * 180.31900 * 16 15 14 18 18 C 1.34775 * 120.00386 * 24.81630 * 17 16 15 19 19 O 1.21303 * 119.99840 * 5.52438 * 18 17 16 20 20 C 1.50699 * 120.00149 * 185.52563 * 18 17 16 21 21 H 1.09004 * 115.55193 * 34.42049 * 20 18 17 22 22 C 1.52998 * 117.50139 * 248.74490 * 20 18 17 23 23 C 1.53000 * 117.49824 * 180.08604 * 20 18 17 24 24 H 1.09003 * 117.49881 * 214.98032 * 23 20 18 25 25 F 1.39898 * 117.50017 * 359.97438 * 23 20 18 26 26 H 0.97000 * 119.99630 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46716 * 299.99475 * 9 7 2 28 28 H 1.08997 * 109.47083 * 59.99933 * 9 7 2 29 29 H 1.07998 * 120.00943 * 0.02916 * 12 11 10 30 30 H 1.08001 * 119.90200 * 179.97438 * 13 12 11 31 31 H 1.08008 * 119.89219 * 180.02562 * 14 13 12 32 32 H 1.07997 * 119.99756 * 180.02562 * 15 14 13 33 33 H 0.96999 * 119.99751 * 204.81795 * 17 16 15 34 34 H 1.09011 * 117.49305 * 0.02562 * 22 20 18 35 35 H 1.08992 * 117.50056 * 145.01968 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4002 5 1 1.4464 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 16 2.4299 -3.8779 -0.0014 11 6 1.3826 -5.2949 -0.0021 12 6 0.0033 -5.1410 -0.0021 13 6 -0.8159 -6.2540 -0.0021 14 6 -0.2656 -7.5228 -0.0026 15 6 1.1073 -7.6856 -0.0024 16 6 1.9372 -6.5750 -0.0082 17 7 3.3292 -6.7379 -0.0147 18 6 3.8730 -7.8692 -0.5054 19 8 3.1666 -8.7027 -1.0323 20 6 5.3587 -8.0986 -0.3995 21 1 5.8325 -7.7038 0.4993 22 6 6.1715 -8.0741 -1.6954 23 6 5.9153 -9.4014 -0.9773 24 1 6.7555 -9.8634 -0.4589 25 9 5.0060 -10.2887 -1.5630 26 1 -0.4849 -0.8401 0.0004 27 1 0.6241 -2.5575 0.8881 28 1 0.6247 -2.5563 -0.8919 29 1 -0.4298 -4.1517 -0.0022 30 1 -1.8891 -6.1326 -0.0017 31 1 -0.9105 -8.3892 -0.0030 32 1 1.5332 -8.6781 -0.0032 33 1 3.9012 -6.0364 0.3340 34 1 5.6316 -7.8916 -2.6247 35 1 7.1801 -7.6635 -1.6493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121088141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:05 Heat of formation + Delta-G solvation = -37.547241 kcal Electronic energy + Delta-G solvation = -20378.698603 eV Core-core repulsion = 16996.917892 eV Total energy + Delta-G solvation = -3381.780711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.72208 -40.53729 -38.40855 -36.09047 -34.74844 -33.66252 -30.84700 -29.62168 -28.19456 -25.12932 -23.39226 -22.84739 -22.76753 -21.77536 -20.12577 -18.24088 -17.80949 -17.03801 -16.50680 -16.23666 -15.63317 -15.22035 -14.90451 -14.67419 -14.32366 -13.98817 -13.81426 -13.69104 -13.56557 -13.26294 -12.91349 -12.55646 -12.41778 -12.07965 -11.85208 -11.56744 -10.85708 -10.82486 -10.68688 -10.46073 -10.37582 -10.21900 -9.75364 -9.50041 -9.32371 -9.00229 -8.63343 -8.09938 -6.73572 -6.66353 -4.40364 1.36878 1.57935 2.21961 2.33612 2.85476 3.27652 3.32311 3.35536 3.38871 3.52651 3.72678 3.99764 4.21673 4.29700 4.34726 4.61733 4.70879 5.12267 5.14989 5.21523 5.26752 5.40709 5.48988 5.67875 5.70461 5.71360 6.09187 6.34770 6.45710 6.56442 6.60364 6.61398 6.75833 7.18230 7.36873 7.61446 8.01874 8.10790 8.50787 9.29887 10.73962 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.003836 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.867948 B = 7298.396400 C = 8651.542267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.598 4.598 8 H 0.063 0.937 9 C 0.060 3.940 10 S -0.150 6.150 11 C -0.102 4.102 12 C -0.116 4.116 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.117 4.117 16 C 0.151 3.849 17 N -0.655 5.655 18 C 0.539 3.461 19 O -0.508 6.508 20 C -0.210 4.210 21 H 0.141 0.859 22 C -0.163 4.163 23 C 0.054 3.946 24 H 0.143 0.857 25 F -0.164 7.164 26 H 0.269 0.731 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.415 0.585 34 H 0.112 0.888 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.495 -15.843 0.716 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.906 3.094 4 H -0.210 1.210 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.638 4.638 8 H 0.081 0.919 9 C -0.087 4.087 10 S 0.096 5.904 11 C -0.217 4.217 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.141 4.141 15 C -0.138 4.138 16 C 0.051 3.949 17 N -0.300 5.300 18 C 0.326 3.674 19 O -0.382 6.382 20 C -0.231 4.231 21 H 0.159 0.841 22 C -0.200 4.200 23 C 0.018 3.982 24 H 0.160 0.840 25 F -0.144 7.144 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.252 0.748 34 H 0.131 0.869 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.081 -14.655 0.325 17.790 hybrid contribution -1.096 -1.301 0.227 1.717 sum 8.984 -15.956 0.552 18.320 Atomic orbital electron populations 1.70781 1.06858 1.30717 1.45103 1.25980 0.96323 1.02563 0.92928 0.83381 0.74649 0.74229 0.77098 1.21043 1.20631 1.21111 1.21516 0.94779 0.89510 1.57966 0.91876 1.21421 0.95085 0.92566 0.99642 1.84993 1.17356 0.97268 1.90791 1.21857 0.97551 0.96206 1.06078 1.21152 0.91553 0.99834 1.01511 1.21037 0.99533 0.92273 1.00945 1.20965 0.94395 0.97076 1.01697 1.21236 0.93116 0.98366 1.01131 1.17204 0.82265 0.92202 1.03239 1.43452 1.05745 1.19762 1.60995 1.19555 0.88599 0.81487 0.77783 1.90736 1.62052 1.43981 1.41467 1.22969 0.93584 1.04953 1.01628 0.84092 1.23726 1.01834 0.98968 0.95497 1.22022 0.92870 0.83345 0.99996 0.84020 1.92904 1.68310 1.68601 1.84587 0.92029 0.94676 0.94650 0.85158 0.86013 0.85964 0.83824 0.74816 0.86921 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 13.65 55.43 0.76 -25.29 16 2 C 0.03 0.79 5.46 -17.82 -0.10 0.69 16 3 Si 1.08 24.05 29.90 -169.99 -5.08 18.96 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.60 -16.28 9.13 -34.44 -0.31 -16.59 16 8 H 0.06 1.71 7.71 -52.48 -0.40 1.31 16 9 C 0.06 1.48 3.40 36.01 0.12 1.60 16 10 S -0.15 -3.12 20.55 -107.50 -2.21 -5.32 16 11 C -0.10 -1.93 6.12 -38.91 -0.24 -2.17 16 12 C -0.12 -2.12 9.36 -39.39 -0.37 -2.49 16 13 C -0.12 -1.83 10.04 -39.57 -0.40 -2.23 16 14 C -0.12 -1.79 10.04 -39.56 -0.40 -2.19 16 15 C -0.12 -1.93 8.72 -39.42 -0.34 -2.27 16 16 C 0.15 2.63 6.44 -83.43 -0.54 2.09 16 17 N -0.66 -9.69 5.18 -9.71 -0.05 -9.74 16 18 C 0.54 7.56 7.42 -10.99 -0.08 7.48 16 19 O -0.51 -8.75 12.31 5.54 0.07 -8.68 16 20 C -0.21 -1.95 6.19 -91.77 -0.57 -2.52 16 21 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.16 -1.27 10.22 -26.70 -0.27 -1.55 16 23 C 0.05 0.47 7.83 -26.70 -0.21 0.26 16 24 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 25 F -0.16 -2.17 15.71 2.25 0.04 -2.13 16 26 H 0.27 7.70 7.22 -40.82 -0.29 7.41 16 27 H 0.04 0.89 7.61 -51.92 -0.40 0.49 16 28 H 0.04 0.91 7.62 -51.93 -0.40 0.51 16 29 H 0.13 2.49 5.88 -52.49 -0.31 2.18 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.14 2.37 5.79 -52.49 -0.30 2.06 16 33 H 0.41 5.53 7.64 -40.82 -0.31 5.21 16 34 H 0.11 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -32.38 317.15 -9.15 -41.54 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -3.75 Total: 5.77 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -3.70 Total: -19.88 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.71 Total: -35.03 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.68 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.96 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.21 Total: -5.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.38 -9.15 -41.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121088141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.990 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds