Wall clock time and date at job start Tue Mar 31 2020 07:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48510 * 109.46950 * 90.00174 * 3 2 1 5 5 H 1.48506 * 109.47141 * 330.00467 * 3 2 1 6 6 H 1.48503 * 109.47498 * 210.00112 * 3 2 1 7 7 C 1.37880 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00339 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99709 * 0.02562 * 7 2 1 10 10 S 1.81402 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.76198 * 103.00062 * 179.97438 * 10 9 7 12 12 C 1.38786 * 120.10112 * 359.97438 * 11 10 9 13 13 C 1.38199 * 119.98832 * 180.02562 * 12 11 10 14 14 C 1.38299 * 120.19712 * 359.97438 * 13 12 11 15 15 C 1.38248 * 120.21371 * 0.03540 * 14 13 12 16 16 C 1.38655 * 120.00350 * 359.68664 * 15 14 13 17 17 N 1.40142 * 120.09582 * 180.31900 * 16 15 14 18 18 C 1.34775 * 120.00386 * 24.81630 * 17 16 15 19 19 O 1.21303 * 119.99840 * 5.52438 * 18 17 16 20 20 C 1.50699 * 120.00149 * 185.52563 * 18 17 16 21 21 H 1.09004 * 115.55193 * 34.42049 * 20 18 17 22 22 C 1.52998 * 117.50139 * 248.74490 * 20 18 17 23 23 C 1.53000 * 117.49824 * 180.08604 * 20 18 17 24 24 H 1.09003 * 117.49881 * 214.98032 * 23 20 18 25 25 F 1.39898 * 117.50017 * 359.97438 * 23 20 18 26 26 H 0.97000 * 119.99630 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46716 * 299.99475 * 9 7 2 28 28 H 1.08997 * 109.47083 * 59.99933 * 9 7 2 29 29 H 1.07998 * 120.00943 * 0.02916 * 12 11 10 30 30 H 1.08001 * 119.90200 * 179.97438 * 13 12 11 31 31 H 1.08008 * 119.89219 * 180.02562 * 14 13 12 32 32 H 1.07997 * 119.99756 * 180.02562 * 15 14 13 33 33 H 0.96999 * 119.99751 * 204.81795 * 17 16 15 34 34 H 1.09011 * 117.49305 * 0.02562 * 22 20 18 35 35 H 1.08992 * 117.50056 * 145.01968 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4002 5 1 1.4464 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 16 2.4299 -3.8779 -0.0014 11 6 1.3826 -5.2949 -0.0021 12 6 0.0033 -5.1410 -0.0021 13 6 -0.8159 -6.2540 -0.0021 14 6 -0.2656 -7.5228 -0.0026 15 6 1.1073 -7.6856 -0.0024 16 6 1.9372 -6.5750 -0.0082 17 7 3.3292 -6.7379 -0.0147 18 6 3.8730 -7.8692 -0.5054 19 8 3.1666 -8.7027 -1.0323 20 6 5.3587 -8.0986 -0.3995 21 1 5.8325 -7.7038 0.4993 22 6 6.1715 -8.0741 -1.6954 23 6 5.9153 -9.4014 -0.9773 24 1 6.7555 -9.8634 -0.4589 25 9 5.0060 -10.2887 -1.5630 26 1 -0.4849 -0.8401 0.0004 27 1 0.6241 -2.5575 0.8881 28 1 0.6247 -2.5563 -0.8919 29 1 -0.4298 -4.1517 -0.0022 30 1 -1.8891 -6.1326 -0.0017 31 1 -0.9105 -8.3892 -0.0030 32 1 1.5332 -8.6781 -0.0032 33 1 3.9012 -6.0364 0.3340 34 1 5.6316 -7.8916 -2.6247 35 1 7.1801 -7.6635 -1.6493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121088141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:04 Heat of formation + Delta-G solvation = -56.351071 kcal Electronic energy + Delta-G solvation = -20379.513998 eV Core-core repulsion = 16996.917892 eV Total energy + Delta-G solvation = -3382.596107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.56057 -41.71238 -39.63382 -36.88884 -36.03373 -35.69789 -32.23915 -30.89681 -30.20735 -26.15803 -25.35091 -24.18755 -23.43530 -23.00392 -21.21232 -19.69753 -18.88499 -18.59328 -17.98043 -17.12407 -16.69810 -16.56845 -16.25319 -15.70612 -15.63430 -15.55232 -15.37995 -14.99087 -14.92097 -14.66252 -14.10938 -13.85475 -13.76290 -13.52487 -13.21955 -12.95266 -12.60420 -12.20970 -11.93379 -11.69859 -11.46511 -11.26689 -11.16845 -11.00211 -10.94243 -10.82630 -10.59968 -9.42585 -8.85787 -8.32455 -6.60876 0.06678 0.21296 0.60759 1.29040 1.52851 1.59236 1.61052 1.79999 1.83262 2.49480 2.51369 2.69870 3.01131 3.06877 3.41366 3.54577 3.75338 4.00078 4.04858 4.11446 4.27537 4.36232 4.40250 4.52055 4.55219 4.72890 4.75862 4.77458 5.04326 5.07646 5.18062 5.33523 5.43858 5.54512 5.89449 5.92818 6.22414 6.30532 6.90254 7.18806 8.55399 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.003836 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.867948 B = 7298.396400 C = 8651.542267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.019 4.019 3 Si 1.126 2.874 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.613 4.613 8 H 0.062 0.938 9 C 0.060 3.940 10 S -0.134 6.134 11 C -0.129 4.129 12 C -0.132 4.132 13 C -0.116 4.116 14 C -0.104 4.104 15 C -0.127 4.127 16 C 0.150 3.850 17 N -0.655 5.655 18 C 0.533 3.467 19 O -0.544 6.544 20 C -0.218 4.218 21 H 0.178 0.822 22 C -0.151 4.151 23 C 0.047 3.953 24 H 0.188 0.812 25 F -0.196 7.196 26 H 0.258 0.742 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.420 0.580 34 H 0.089 0.911 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.334 -16.793 1.142 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.945 3.055 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.652 4.652 8 H 0.080 0.920 9 C -0.088 4.088 10 S 0.111 5.889 11 C -0.244 4.244 12 C -0.157 4.157 13 C -0.136 4.136 14 C -0.125 4.125 15 C -0.148 4.148 16 C 0.049 3.951 17 N -0.300 5.300 18 C 0.322 3.678 19 O -0.421 6.421 20 C -0.239 4.239 21 H 0.195 0.805 22 C -0.189 4.189 23 C 0.011 3.989 24 H 0.205 0.795 25 F -0.176 7.176 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.130 0.870 30 H 0.169 0.831 31 H 0.177 0.823 32 H 0.163 0.837 33 H 0.259 0.741 34 H 0.108 0.892 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.931 -15.639 0.758 19.685 hybrid contribution -1.717 -1.191 0.074 2.091 sum 10.214 -16.829 0.832 19.704 Atomic orbital electron populations 1.70895 1.07876 1.30111 1.47058 1.27521 0.96378 1.06363 0.91721 0.82826 0.74143 0.70324 0.78167 1.19314 1.20485 1.19201 1.21853 0.94940 0.90818 1.57561 0.91981 1.21123 0.95606 0.94206 0.97848 1.84570 1.16070 0.96478 1.91772 1.21845 0.97695 0.95870 1.08967 1.21201 0.91864 1.00136 1.02479 1.21333 1.00779 0.91561 0.99914 1.21401 0.94236 0.98000 0.98887 1.21433 0.93915 0.98075 1.01400 1.17382 0.83795 0.91649 1.02313 1.43566 1.04861 1.20461 1.61064 1.20448 0.90618 0.80342 0.76375 1.90710 1.63518 1.44948 1.42970 1.23105 0.90336 1.06413 1.04020 0.80510 1.23869 1.03005 0.98421 0.93586 1.22694 0.92972 0.83112 1.00082 0.79509 1.92836 1.69765 1.69760 1.85251 0.93266 0.96313 0.96642 0.86986 0.83083 0.82298 0.83668 0.74145 0.89234 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.84 13.65 21.45 0.29 -54.55 16 2 C -0.02 -1.07 5.46 84.66 0.46 -0.61 16 3 Si 1.13 47.98 29.90 68.60 2.05 50.04 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.61 -34.04 9.13 25.60 0.23 -33.80 16 8 H 0.06 3.39 7.71 -2.91 -0.02 3.37 16 9 C 0.06 3.09 3.40 71.24 0.24 3.33 16 10 S -0.13 -5.66 20.55 -56.49 -1.16 -6.82 16 11 C -0.13 -4.98 6.12 22.71 0.14 -4.84 16 12 C -0.13 -4.96 9.36 22.39 0.21 -4.75 16 13 C -0.12 -3.47 10.04 22.27 0.22 -3.25 16 14 C -0.10 -2.90 10.04 22.29 0.22 -2.68 16 15 C -0.13 -4.05 8.72 22.37 0.20 -3.86 16 16 C 0.15 5.17 6.44 38.22 0.25 5.41 16 17 N -0.66 -19.01 5.18 -303.00 -1.57 -20.58 16 18 C 0.53 14.50 7.42 87.66 0.65 15.15 16 19 O -0.54 -18.69 12.31 -3.10 -0.04 -18.73 16 20 C -0.22 -3.51 6.19 -11.54 -0.07 -3.58 16 21 H 0.18 1.53 8.14 -2.39 -0.02 1.51 16 22 C -0.15 -1.97 10.22 30.62 0.31 -1.65 16 23 C 0.05 0.69 7.83 30.62 0.24 0.93 16 24 H 0.19 0.96 8.14 -2.39 -0.02 0.94 16 25 F -0.20 -5.02 15.71 44.97 0.71 -4.31 16 26 H 0.26 15.43 7.22 -92.71 -0.67 14.76 16 27 H 0.02 1.01 7.61 -2.39 -0.02 0.99 16 28 H 0.02 0.84 7.62 -2.39 -0.02 0.82 16 29 H 0.11 4.55 5.88 -2.91 -0.02 4.53 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 31 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.15 4.67 5.79 -2.91 -0.02 4.66 16 33 H 0.42 10.89 7.64 -92.71 -0.71 10.18 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -73.17 317.15 4.12 -69.05 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.53 Total: 20.10 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 3.31 Total: -34.19 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.28 Total: -75.13 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.04 Total: -18.73 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.71 Total: -4.31 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.05 Total: 50.04 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -1.16 Total: -6.82 kcal Total: -73.17 4.12 -69.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121088141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.700 kcal (2) G-P(sol) polarization free energy of solvation -73.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds