Wall clock time and date at job start Tue Mar 31 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47269 * 240.00110 * 3 2 1 5 5 H 1.48503 * 109.46969 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47279 * 119.99537 * 3 2 1 7 7 C 1.37871 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00124 * 0.02562 * 7 2 1 10 10 C 1.53514 * 114.17137 * 179.97438 * 9 7 2 11 11 N 1.47483 * 87.93195 * 220.13685 * 10 9 7 12 12 C 1.46900 * 110.99820 * 138.70295 * 11 10 9 13 13 C 1.50700 * 109.46887 * 170.00059 * 12 11 10 14 14 C 1.38275 * 119.93281 * 105.00147 * 13 12 11 15 15 C 1.38498 * 120.04440 * 180.02562 * 14 13 12 16 16 C 1.39304 * 119.84980 * 359.97438 * 15 14 13 17 17 C 1.38505 * 119.83944 * 0.02562 * 16 15 14 18 18 C 1.38309 * 119.93601 * 284.97614 * 13 12 11 19 19 Cl 1.73602 * 119.94176 * 0.02562 * 18 13 12 20 20 O 1.36503 * 108.63956 * 179.97438 * 16 15 14 21 21 C 1.43988 * 105.48501 * 17.28371 * 20 16 15 22 22 O 1.36529 * 131.52458 * 179.97438 * 15 14 13 23 23 C 1.47483 * 87.83525 * 27.01230 * 11 10 9 24 24 H 0.96996 * 120.00112 * 0.02562 * 1 2 3 25 25 H 1.09001 * 113.25084 * 312.94689 * 9 7 2 26 26 H 1.09006 * 113.47431 * 105.37117 * 10 9 7 27 27 H 1.08990 * 113.53126 * 334.91616 * 10 9 7 28 28 H 1.09002 * 109.46952 * 50.00169 * 12 11 10 29 29 H 1.08999 * 109.47252 * 290.00335 * 12 11 10 30 30 H 1.07998 * 119.98168 * 359.97438 * 14 13 12 31 31 H 1.07999 * 119.99279 * 179.72669 * 17 16 15 32 32 H 1.09008 * 110.57009 * 91.43746 * 21 20 16 33 33 H 1.09000 * 110.56971 * 214.15256 * 21 20 16 34 34 H 1.08991 * 113.47664 * 87.75401 * 23 11 10 35 35 H 1.09000 * 113.47370 * 218.22417 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.1498 -3.7438 0.0005 11 7 1.2051 -4.3602 -0.9495 12 6 1.9207 -5.0902 -2.0046 13 6 0.9384 -5.9039 -2.8072 14 6 0.5693 -5.4875 -4.0730 15 6 -0.3337 -6.2333 -4.8124 16 6 -0.8682 -7.4034 -4.2782 17 6 -0.4946 -7.8154 -3.0097 18 6 0.4084 -7.0659 -2.2764 19 17 0.8753 -7.5841 -0.6867 20 8 -1.7235 -7.9491 -5.1915 21 6 -1.3965 -7.3231 -6.4462 22 8 -0.8539 -6.0465 -6.0608 23 6 0.8518 -2.9994 -1.3948 24 1 -0.4850 0.8400 -0.0004 25 1 0.4448 -2.5305 0.7333 26 1 2.1891 -4.2510 0.9646 27 1 3.1382 -3.5668 -0.4231 28 1 2.6576 -5.7535 -1.5517 29 1 2.4252 -4.3800 -2.6597 30 1 0.9846 -4.5798 -4.4851 31 1 -0.9109 -8.7198 -2.5913 32 1 -0.6511 -7.9091 -6.9839 33 1 -2.2918 -7.1937 -7.0544 34 1 1.4937 -2.6228 -2.1912 35 1 -0.2089 -2.8757 -1.6134 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138239553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:40 Heat of formation + Delta-G solvation = -20.872606 kcal Electronic energy + Delta-G solvation = -20977.568897 eV Core-core repulsion = 17582.094757 eV Total energy + Delta-G solvation = -3395.474141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.24396 -40.81579 -39.16226 -37.39369 -37.19135 -34.80544 -33.15472 -31.38248 -29.89894 -27.55067 -26.52902 -26.45220 -24.56564 -24.14716 -22.60007 -20.42759 -19.17769 -18.82573 -18.55673 -18.39608 -17.36341 -16.69841 -16.29607 -15.99008 -15.70992 -15.60395 -15.48676 -15.02787 -14.58867 -14.32052 -14.07812 -13.85491 -13.76890 -13.27912 -13.04629 -12.91605 -12.81769 -12.53040 -12.40274 -12.07469 -11.83226 -11.54990 -11.47752 -11.09715 -10.82288 -10.46725 -9.96387 -9.64203 -9.06612 -8.11954 -6.23334 -0.15125 -0.01169 1.01369 1.45272 1.46308 1.54098 1.77594 2.26062 2.45147 2.45722 3.17521 3.29412 3.42266 3.64172 3.76930 3.85933 4.00432 4.14454 4.22715 4.33937 4.38023 4.52418 4.62378 4.69412 4.77823 4.84526 4.90433 4.93778 5.00853 5.02796 5.19725 5.29299 5.55608 5.66385 5.88990 5.95398 6.32633 6.41227 6.86715 7.45391 8.97509 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.004026 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.742922 B = 6953.534030 C = 7980.386886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.014 3.986 11 N -0.468 5.468 12 C 0.059 3.941 13 C -0.054 4.054 14 C -0.091 4.091 15 C 0.028 3.972 16 C 0.034 3.966 17 C -0.095 4.095 18 C -0.014 4.014 19 Cl -0.041 7.041 20 O -0.316 6.316 21 C 0.204 3.796 22 O -0.321 6.321 23 C 0.018 3.982 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.147 0.853 31 H 0.163 0.837 32 H 0.111 0.889 33 H 0.164 0.836 34 H 0.055 0.945 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -17.150 -11.443 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.002 3.998 10 C -0.114 4.114 11 N -0.190 5.190 12 C -0.069 4.069 13 C -0.055 4.055 14 C -0.110 4.110 15 C -0.017 4.017 16 C -0.011 4.011 17 C -0.114 4.114 18 C -0.042 4.042 19 Cl -0.012 7.012 20 O -0.232 6.232 21 C 0.093 3.907 22 O -0.238 6.238 23 C -0.111 4.111 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.164 0.836 31 H 0.180 0.820 32 H 0.128 0.872 33 H 0.181 0.819 34 H 0.074 0.926 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.208 -17.561 -11.227 20.844 hybrid contribution 0.597 1.448 -0.402 1.617 sum 0.805 -16.112 -11.629 19.887 Atomic orbital electron populations 1.70099 1.07597 1.27541 1.50950 1.25816 0.95521 1.02663 0.94403 0.85647 0.78347 0.78828 0.79052 1.19322 1.21350 1.19384 1.21367 0.93093 0.91363 1.50889 0.91985 1.20025 0.94552 0.92166 0.93104 1.23811 0.95484 0.95263 0.96852 1.68854 1.27478 1.12439 1.10210 1.21622 0.94027 0.97402 0.93854 1.19392 0.98993 0.94056 0.93078 1.19987 0.96848 1.00868 0.93309 1.19841 0.98275 0.96120 0.87431 1.19563 0.93889 0.93942 0.93748 1.19892 0.98363 1.01969 0.91224 1.20257 0.99743 0.95817 0.88369 1.98374 1.90826 1.89860 1.22153 1.87338 1.53779 1.63389 1.18717 1.26217 1.01677 0.77241 0.85517 1.87361 1.72719 1.34591 1.29122 1.23853 0.98801 0.88474 0.99960 0.92974 0.95464 0.90847 0.91460 0.88442 0.92058 0.83567 0.81973 0.87159 0.81871 0.92645 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.23 13.26 21.45 0.28 -53.95 16 2 C 0.02 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.53 -28.43 8.83 25.60 0.23 -28.20 16 8 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.02 1.04 3.76 -11.19 -0.04 0.99 16 10 C 0.01 0.57 7.25 83.58 0.61 1.18 16 11 N -0.47 -17.90 6.21 -932.46 -5.79 -23.69 16 12 C 0.06 1.81 4.27 85.56 0.37 2.18 16 13 C -0.05 -1.57 5.47 -19.84 -0.11 -1.67 16 14 C -0.09 -2.56 9.68 22.34 0.22 -2.34 16 15 C 0.03 0.76 7.15 22.59 0.16 0.92 16 16 C 0.03 0.86 7.15 22.59 0.16 1.03 16 17 C -0.10 -2.36 9.84 22.37 0.22 -2.14 16 18 C -0.01 -0.39 6.31 22.32 0.14 -0.25 16 19 Cl -0.04 -1.10 27.52 -2.72 -0.07 -1.18 16 20 O -0.32 -7.06 11.40 -76.09 -0.87 -7.93 16 21 C 0.20 3.20 8.89 113.37 1.01 4.20 16 22 O -0.32 -7.81 11.40 -76.40 -0.87 -8.68 16 23 C 0.02 0.83 7.28 83.58 0.61 1.44 16 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.03 1.55 8.11 -2.39 -0.02 1.53 16 26 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 27 H 0.07 2.51 7.87 -2.39 -0.02 2.50 16 28 H 0.10 2.71 7.51 -2.39 -0.02 2.69 16 29 H 0.06 1.83 7.11 -2.39 -0.02 1.81 16 30 H 0.15 3.88 8.00 -2.91 -0.02 3.85 16 31 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 2.46 7.38 -2.39 -0.02 2.44 16 35 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -63.38 314.71 -0.15 -63.53 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 1.11 Total: 8.42 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 4.03 Total: -21.36 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -5.50 Total: -77.63 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -1.74 Total: -16.61 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.18 kcal Total: -63.38 -0.15 -63.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138239553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.657 kcal (2) G-P(sol) polarization free energy of solvation -63.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds