Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48503 * 109.47544 * 270.00021 * 3 2 1 5 5 H 1.48495 * 109.47097 * 30.00671 * 3 2 1 6 6 H 1.48508 * 109.46922 * 150.00255 * 3 2 1 7 7 C 1.37883 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.53935 * 113.73685 * 81.23499 * 9 7 2 11 11 N 1.48300 * 86.06401 * 138.13037 * 10 9 7 12 12 C 1.46895 * 111.00518 * 222.41850 * 11 10 9 13 13 C 1.50700 * 109.47201 * 284.19781 * 12 11 10 14 14 C 1.37977 * 120.06519 * 105.28658 * 13 12 11 15 15 C 1.38326 * 120.16461 * 179.70114 * 14 13 12 16 16 C 1.38508 * 120.28576 * 0.59641 * 15 14 13 17 17 Cl 1.73596 * 119.93531 * 179.70035 * 16 15 14 18 18 C 1.38040 * 120.12717 * 359.68200 * 16 15 14 19 19 C 1.39610 * 120.06121 * 285.56239 * 13 12 11 20 20 C 1.47725 * 120.14201 * 359.97438 * 19 13 12 21 21 O 1.21473 * 120.00557 * 5.58132 * 20 19 13 22 22 O 1.34716 * 120.00067 * 185.58946 * 20 19 13 23 23 C 1.47964 * 90.75121 * 335.30755 * 11 10 9 24 24 H 0.97008 * 119.99344 * 359.97438 * 1 2 3 25 25 H 1.09003 * 112.93535 * 309.66618 * 9 7 2 26 26 H 1.09005 * 113.75403 * 252.50556 * 10 9 7 27 27 H 1.08996 * 113.76090 * 23.85975 * 10 9 7 28 28 H 1.08998 * 109.47153 * 44.19270 * 12 11 10 29 29 H 1.08994 * 109.47428 * 164.19745 * 12 11 10 30 30 H 1.07996 * 119.91397 * 359.97438 * 14 13 12 31 31 H 1.07994 * 119.85879 * 180.29932 * 15 14 13 32 32 H 1.08005 * 120.08298 * 180.02562 * 18 16 15 33 33 H 0.96692 * 117.00257 * 179.97438 * 22 20 19 34 34 H 1.08999 * 113.76000 * 270.36942 * 23 11 10 35 35 H 1.09003 * 113.85284 * 139.01652 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 0.7545 -2.9281 -1.3931 11 7 1.1869 -4.2950 -1.0137 12 6 1.8727 -4.9593 -2.1300 13 6 0.8567 -5.4060 -3.1494 14 6 0.7201 -4.7171 -4.3370 15 6 -0.2075 -5.1290 -5.2768 16 6 -1.0137 -6.2274 -5.0277 17 17 -2.1803 -6.7318 -6.2102 18 6 -0.8911 -6.9220 -3.8411 19 6 0.0479 -6.5143 -2.8914 20 6 0.1853 -7.2529 -1.6195 21 8 0.9298 -6.8385 -0.7537 22 8 -0.5150 -8.3863 -1.4197 23 6 2.1608 -3.7399 -0.0479 24 1 -0.4849 0.8402 0.0004 25 1 0.4839 -2.5468 0.7725 26 1 -0.3227 -2.8272 -1.5256 27 1 1.3273 -2.4986 -2.2150 28 1 2.5706 -4.2624 -2.5940 29 1 2.4185 -5.8259 -1.7571 30 1 1.3421 -3.8567 -4.5352 31 1 -0.3069 -4.5890 -6.2068 32 1 -1.5199 -7.7786 -3.6478 33 1 -0.3918 -8.8348 -0.5720 34 1 3.1440 -3.5474 -0.4772 35 1 2.2076 -4.2863 0.8942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142643126.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = -30.835072 kcal Electronic energy + Delta-G solvation = -21204.748415 eV Core-core repulsion = 17808.842269 eV Total energy + Delta-G solvation = -3395.906146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.56339 -38.96386 -38.27278 -36.59941 -35.90363 -32.95429 -31.85280 -31.58004 -28.49009 -25.76408 -24.89963 -24.47461 -22.83841 -21.91398 -20.51310 -18.48386 -18.08400 -17.32928 -16.59623 -16.01406 -15.64641 -15.50428 -14.90579 -14.67665 -14.31191 -14.03987 -13.82094 -13.42258 -13.18820 -12.90815 -12.24114 -11.94224 -11.77558 -11.58576 -11.47422 -11.31187 -11.20023 -11.07261 -10.92297 -10.69266 -10.38322 -9.93184 -9.72633 -9.25062 -9.21914 -8.98352 -8.63522 -8.41469 -7.75946 -6.03474 -4.08008 0.59969 1.05065 1.93962 2.61572 3.06857 3.28393 3.35863 3.38889 3.58642 4.41100 4.58948 4.72492 4.78006 4.99092 5.20163 5.26980 5.32739 5.41529 5.64649 5.80569 5.88030 5.97690 6.08897 6.14849 6.41165 6.43210 6.52074 6.55344 6.64653 6.73350 6.84809 7.18423 7.30179 7.75804 7.94085 8.06088 8.14749 8.39609 8.94667 9.56718 11.05876 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.004220 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.239125 B = 6633.616868 C = 7665.327717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.039 3.961 10 C 0.009 3.991 11 N -0.464 5.464 12 C 0.055 3.945 13 C 0.003 3.997 14 C -0.111 4.111 15 C -0.075 4.075 16 C -0.056 4.056 17 Cl -0.070 7.070 18 C -0.058 4.058 19 C -0.096 4.096 20 C 0.515 3.485 21 O -0.463 6.463 22 O -0.522 6.522 23 C 0.006 3.994 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.412 0.588 34 H 0.053 0.947 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 -15.039 -10.396 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.120 4.120 11 N -0.187 5.187 12 C -0.073 4.073 13 C 0.002 3.998 14 C -0.130 4.130 15 C -0.094 4.094 16 C -0.083 4.083 17 Cl -0.042 7.042 18 C -0.077 4.077 19 C -0.098 4.098 20 C 0.357 3.643 21 O -0.348 6.348 22 O -0.335 6.335 23 C -0.122 4.122 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.270 0.730 34 H 0.071 0.929 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.926 -15.135 -10.408 18.469 hybrid contribution 0.898 1.158 -0.080 1.467 sum -1.028 -13.978 -10.487 17.505 Atomic orbital electron populations 1.69976 1.05967 1.26628 1.49801 1.25005 0.94791 0.99049 0.94755 0.86645 0.79973 0.83594 0.78080 1.20713 1.21181 1.19850 1.21104 0.92752 0.90408 1.51327 0.92497 1.20295 0.93777 0.91021 0.92935 1.24166 0.99818 0.86996 1.01020 1.68716 1.25894 1.16030 1.08016 1.21712 0.93385 1.00251 0.91938 1.20163 0.94257 0.91008 0.94333 1.21083 0.99088 1.00047 0.92792 1.21277 0.93770 0.94380 0.99977 1.20733 0.96331 0.98845 0.92393 1.98366 1.57906 1.90785 1.57111 1.21271 0.96674 0.98914 0.90872 1.18747 1.00395 0.97821 0.92859 1.20623 0.77835 0.78542 0.87275 1.91004 1.35010 1.65464 1.43348 1.84523 1.66187 1.38444 1.44380 1.23990 0.95006 0.97449 0.95790 0.92938 0.92475 0.91737 0.93005 0.93929 0.89141 0.84053 0.84376 0.83684 0.73013 0.92916 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.11 8.77 -34.44 -0.30 -14.41 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.04 0.98 3.59 -90.84 -0.33 0.66 16 10 C 0.01 0.20 7.20 -2.57 -0.02 0.18 16 11 N -0.46 -9.59 4.84 -239.48 -1.16 -10.75 16 12 C 0.05 0.94 3.89 -4.98 -0.02 0.93 16 13 C 0.00 0.05 5.12 -104.21 -0.53 -0.48 16 14 C -0.11 -1.46 9.65 -39.64 -0.38 -1.84 16 15 C -0.08 -0.87 9.82 -39.45 -0.39 -1.26 16 16 C -0.06 -0.66 6.31 -39.55 -0.25 -0.91 16 17 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 18 C -0.06 -0.72 9.40 -39.13 -0.37 -1.09 16 19 C -0.10 -1.38 5.87 -104.99 -0.62 -2.00 16 20 C 0.52 7.50 8.22 34.61 0.28 7.78 16 21 O -0.46 -8.09 13.28 -19.25 -0.26 -8.35 16 22 O -0.52 -5.65 12.70 -40.54 -0.51 -6.17 16 23 C 0.01 0.13 7.54 -2.76 -0.02 0.11 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 26 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 27 H 0.05 1.18 7.65 -51.93 -0.40 0.78 16 28 H 0.04 0.71 7.49 -51.93 -0.39 0.32 16 29 H 0.09 1.55 6.51 -51.93 -0.34 1.21 16 30 H 0.14 1.69 8.00 -52.49 -0.42 1.27 16 31 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.15 1.57 7.62 -52.48 -0.40 1.17 16 33 H 0.41 2.67 9.11 45.56 0.42 3.09 16 34 H 0.05 1.10 7.82 -51.93 -0.41 0.70 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -30.88 317.58 -9.14 -40.02 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.17 Total: 2.17 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.04 Total: -10.60 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.42 Total: -35.61 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.77 Total: -14.52 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.88 -9.14 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142643126.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.181 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds