Wall clock time and date at job start Tue Mar 31 2020 07:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 F 1.39907 * 113.41237 * 2 1 4 4 C 1.53500 * 114.20888 * 133.19788 * 2 1 3 5 5 N 1.47066 * 87.98651 * 139.65841 * 4 2 1 6 6 C 1.34780 * 136.05625 * 152.84745 * 5 4 2 7 7 O 1.21548 * 119.99949 * 354.32038 * 6 5 4 8 8 C 1.47863 * 119.99784 * 174.32559 * 6 5 4 9 9 C 1.39680 * 120.10091 * 353.26006 * 8 6 5 10 10 C 1.38037 * 120.03822 * 180.02562 * 9 8 6 11 11 C 1.38183 * 120.24151 * 359.97438 * 10 9 8 12 12 C 1.39177 * 120.20570 * 0.02562 * 11 10 9 13 13 S 1.76198 * 120.02142 * 179.97438 * 12 11 10 14 14 C 1.76203 * 100.00001 * 275.00962 * 13 12 11 15 15 H 1.07997 * 119.99970 * 4.99803 * 14 13 12 16 16 C 1.38727 * 119.99664 * 185.00501 * 14 13 12 17 17 N 1.31628 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47092 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47271 * 119.99554 * 18 16 14 21 21 H 1.48506 * 109.47002 * 239.99766 * 18 16 14 22 22 C 1.38879 * 119.95499 * 0.02562 * 12 11 10 23 23 C 1.47065 * 87.88268 * 333.10119 * 5 4 2 24 24 H 1.09003 * 109.47621 * 286.79630 * 1 2 3 25 25 H 1.08993 * 109.47365 * 46.80298 * 1 2 3 26 26 H 1.09005 * 109.46906 * 166.79973 * 1 2 3 27 27 H 1.09003 * 113.46617 * 24.87535 * 4 2 1 28 28 H 1.09003 * 113.46925 * 254.43732 * 4 2 1 29 29 H 1.08001 * 119.98085 * 0.02618 * 9 8 6 30 30 H 1.07997 * 119.87698 * 180.02562 * 10 9 8 31 31 H 1.08006 * 119.89452 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99767 * 180.02562 * 17 16 14 33 33 H 1.08006 * 120.11747 * 180.25364 * 22 12 11 34 34 H 1.09004 * 113.46365 * 141.67735 * 23 5 4 35 35 H 1.09000 * 113.46934 * 272.11408 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 2.0858 1.2839 0.0000 4 6 2.1593 -0.9583 1.0206 5 7 3.1599 -1.3052 0.0001 6 6 4.4335 -1.7462 0.0002 7 8 5.0420 -1.8461 1.0476 8 6 5.0905 -2.1082 -1.2740 9 6 4.3541 -2.1294 -2.4607 10 6 4.9686 -2.4681 -3.6494 11 6 6.3130 -2.7868 -3.6717 12 6 7.0565 -2.7690 -2.4953 13 16 8.7703 -3.1769 -2.5292 14 6 8.6693 -4.9322 -2.4129 15 1 7.7059 -5.4200 -2.4295 16 6 9.8274 -5.6875 -2.2999 17 7 11.0016 -5.0930 -2.2801 18 14 9.7205 -7.5484 -2.1773 19 1 8.2963 -7.9665 -2.2229 20 1 10.4536 -8.1623 -3.3136 21 1 10.3266 -7.9958 -0.8976 22 6 6.4464 -2.4305 -1.2945 23 6 2.1612 -0.9530 -1.0204 24 1 -0.3634 0.2970 0.9838 25 1 -0.3634 0.7034 -0.7491 26 1 -0.3633 -1.0006 -0.2347 27 1 1.5100 -1.7906 1.2925 28 1 2.5820 -0.4519 1.8884 29 1 3.3032 -1.8806 -2.4482 30 1 4.3968 -2.4832 -4.5655 31 1 6.7883 -3.0506 -4.6050 32 1 11.8114 -5.6212 -2.2015 33 1 7.0218 -2.4118 -0.3806 34 1 2.5855 -0.4420 -1.8847 35 1 1.5125 -1.7838 -1.2979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156568850.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:11 Heat of formation + Delta-G solvation = -14.361075 kcal Electronic energy + Delta-G solvation = -20495.767394 eV Core-core repulsion = 17114.992110 eV Total energy + Delta-G solvation = -3380.775284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.07190 -40.50510 -38.52038 -37.38101 -32.51206 -32.15705 -30.76929 -30.55023 -27.33803 -26.73308 -25.57059 -23.24956 -22.22455 -20.96872 -19.69993 -18.07424 -17.16984 -16.95003 -16.52501 -15.95107 -15.52247 -15.37582 -14.85846 -14.80431 -14.52412 -14.26859 -13.64429 -13.48778 -13.42802 -12.96582 -12.91654 -12.74314 -12.49869 -12.25046 -11.83821 -11.55879 -11.16276 -11.12284 -11.09241 -10.76594 -10.57920 -9.99146 -9.80020 -9.20508 -9.05881 -8.98477 -8.60548 -8.03673 -6.71727 -6.29139 -4.03251 1.13076 1.64162 2.50221 2.95121 3.18446 3.21452 3.28135 3.41392 3.45211 3.72411 4.03884 4.20457 4.23679 4.37124 4.53473 4.88054 4.92336 5.04879 5.07111 5.09585 5.11420 5.22000 5.27681 5.41024 5.47120 5.50336 5.67833 5.74433 5.84999 6.03027 6.22689 6.56448 6.61633 6.91112 7.17461 7.46024 7.57143 8.13498 8.32305 9.16696 10.77739 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028832 B = 0.003396 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.910598 B = 8243.314112 C = 8434.218965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.076 3.924 3 F -0.179 7.179 4 C 0.088 3.912 5 N -0.647 5.647 6 C 0.598 3.402 7 O -0.527 6.527 8 C -0.150 4.150 9 C -0.099 4.099 10 C -0.142 4.142 11 C -0.053 4.053 12 C -0.106 4.106 13 S -0.035 6.035 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.870 5.870 18 Si 0.921 3.079 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.278 1.278 22 C -0.018 4.018 23 C 0.077 3.923 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.269 0.731 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.578 8.359 0.414 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 F -0.159 7.159 4 C -0.035 4.035 5 N -0.383 5.383 6 C 0.390 3.610 7 O -0.403 6.403 8 C -0.155 4.155 9 C -0.118 4.118 10 C -0.162 4.162 11 C -0.075 4.075 12 C -0.217 4.217 13 S 0.200 5.800 14 C -0.667 4.667 15 H 0.094 0.906 16 C -0.136 4.136 17 N -0.505 5.505 18 Si 0.747 3.253 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.040 4.040 23 C -0.047 4.047 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.079 0.921 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.769 8.882 0.929 22.607 hybrid contribution -1.090 -1.861 0.123 2.160 sum -21.858 7.021 1.052 22.982 Atomic orbital electron populations 1.22050 0.90870 1.04310 1.04274 1.22011 0.93975 0.79543 0.98823 1.92907 1.86924 1.39123 1.96959 1.23592 0.88737 0.96867 0.94340 1.49269 1.10611 1.68282 1.10174 1.17988 0.78471 0.75178 0.89331 1.90792 1.62605 1.53294 1.33610 1.19723 0.95300 1.08257 0.92231 1.21565 0.99481 0.98580 0.92126 1.21084 0.95311 1.02250 0.97526 1.22013 0.93229 0.93762 0.98453 1.22845 1.03667 1.01293 0.93872 1.83630 0.92326 1.08604 1.95456 1.22876 0.95853 0.89656 1.58316 0.90575 1.25008 0.94484 0.99789 0.94336 1.70000 0.97558 1.36097 1.46866 0.86060 0.78469 0.82715 0.78008 1.19518 1.20466 1.20417 1.21931 0.92002 0.91517 0.98522 1.23817 0.89328 0.97213 0.94331 0.90536 0.90510 0.89827 0.87884 0.89114 0.85685 0.85819 0.85005 0.92093 0.84287 0.88441 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 9.67 37.15 0.36 -0.26 16 2 C 0.08 0.58 2.39 -90.24 -0.22 0.36 16 3 F -0.18 -1.97 17.32 2.25 0.04 -1.93 16 4 C 0.09 0.81 8.11 -8.51 -0.07 0.74 16 5 N -0.65 -8.25 3.67 -186.51 -0.68 -8.93 16 6 C 0.60 10.46 8.01 -12.32 -0.10 10.36 16 7 O -0.53 -11.16 17.14 5.32 0.09 -11.07 16 8 C -0.15 -2.67 5.87 -105.00 -0.62 -3.29 16 9 C -0.10 -1.42 9.14 -39.12 -0.36 -1.78 16 10 C -0.14 -2.08 10.02 -39.68 -0.40 -2.48 16 11 C -0.05 -0.98 9.79 -39.25 -0.38 -1.36 16 12 C -0.11 -2.32 5.45 -39.00 -0.21 -2.53 16 13 S -0.03 -0.90 21.41 -107.50 -2.30 -3.21 16 14 C -0.52 -14.77 9.46 30.91 0.29 -14.47 16 15 H 0.08 2.14 7.79 -52.49 -0.41 1.74 16 16 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 17 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 18 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 23 C 0.08 0.62 5.56 -8.65 -0.05 0.57 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.18 7.90 -51.93 -0.41 -0.23 16 27 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.13 1.32 4.21 -52.49 -0.22 1.10 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.14 3.11 7.66 -52.48 -0.40 2.71 16 34 H 0.10 0.79 6.81 -51.93 -0.35 0.43 16 35 H 0.11 0.54 7.92 -51.93 -0.41 0.13 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -34.79 321.18 -8.39 -43.18 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -3.88 Total: -1.60 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.21 Total: -12.92 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.05 Total: -33.80 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.79 -8.39 -43.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156568850.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.817 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds