Wall clock time and date at job start Tue Mar 31 2020 07:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 F 1.39907 * 113.41237 * 2 1 4 4 C 1.53500 * 114.20888 * 133.19788 * 2 1 3 5 5 N 1.47066 * 87.98651 * 139.65841 * 4 2 1 6 6 C 1.34780 * 136.05625 * 152.84745 * 5 4 2 7 7 O 1.21548 * 119.99949 * 354.32038 * 6 5 4 8 8 C 1.47863 * 119.99784 * 174.32559 * 6 5 4 9 9 C 1.39680 * 120.10091 * 353.26006 * 8 6 5 10 10 C 1.38037 * 120.03822 * 180.02562 * 9 8 6 11 11 C 1.38183 * 120.24151 * 359.97438 * 10 9 8 12 12 C 1.39177 * 120.20570 * 0.02562 * 11 10 9 13 13 S 1.76198 * 120.02142 * 179.97438 * 12 11 10 14 14 C 1.76203 * 100.00001 * 275.00962 * 13 12 11 15 15 H 1.07997 * 119.99970 * 4.99803 * 14 13 12 16 16 C 1.38727 * 119.99664 * 185.00501 * 14 13 12 17 17 N 1.31628 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47092 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47271 * 119.99554 * 18 16 14 21 21 H 1.48506 * 109.47002 * 239.99766 * 18 16 14 22 22 C 1.38879 * 119.95499 * 0.02562 * 12 11 10 23 23 C 1.47065 * 87.88268 * 333.10119 * 5 4 2 24 24 H 1.09003 * 109.47621 * 286.79630 * 1 2 3 25 25 H 1.08993 * 109.47365 * 46.80298 * 1 2 3 26 26 H 1.09005 * 109.46906 * 166.79973 * 1 2 3 27 27 H 1.09003 * 113.46617 * 24.87535 * 4 2 1 28 28 H 1.09003 * 113.46925 * 254.43732 * 4 2 1 29 29 H 1.08001 * 119.98085 * 0.02618 * 9 8 6 30 30 H 1.07997 * 119.87698 * 180.02562 * 10 9 8 31 31 H 1.08006 * 119.89452 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99767 * 180.02562 * 17 16 14 33 33 H 1.08006 * 120.11747 * 180.25364 * 22 12 11 34 34 H 1.09004 * 113.46365 * 141.67735 * 23 5 4 35 35 H 1.09000 * 113.46934 * 272.11408 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 2.0858 1.2839 0.0000 4 6 2.1593 -0.9583 1.0206 5 7 3.1599 -1.3052 0.0001 6 6 4.4335 -1.7462 0.0002 7 8 5.0420 -1.8461 1.0476 8 6 5.0905 -2.1082 -1.2740 9 6 4.3541 -2.1294 -2.4607 10 6 4.9686 -2.4681 -3.6494 11 6 6.3130 -2.7868 -3.6717 12 6 7.0565 -2.7690 -2.4953 13 16 8.7703 -3.1769 -2.5292 14 6 8.6693 -4.9322 -2.4129 15 1 7.7059 -5.4200 -2.4295 16 6 9.8274 -5.6875 -2.2999 17 7 11.0016 -5.0930 -2.2801 18 14 9.7205 -7.5484 -2.1773 19 1 8.2963 -7.9665 -2.2229 20 1 10.4536 -8.1623 -3.3136 21 1 10.3266 -7.9958 -0.8976 22 6 6.4464 -2.4305 -1.2945 23 6 2.1612 -0.9530 -1.0204 24 1 -0.3634 0.2970 0.9838 25 1 -0.3634 0.7034 -0.7491 26 1 -0.3633 -1.0006 -0.2347 27 1 1.5100 -1.7906 1.2925 28 1 2.5820 -0.4519 1.8884 29 1 3.3032 -1.8806 -2.4482 30 1 4.3968 -2.4832 -4.5655 31 1 6.7883 -3.0506 -4.6050 32 1 11.8114 -5.6212 -2.2015 33 1 7.0218 -2.4118 -0.3806 34 1 2.5855 -0.4420 -1.8847 35 1 1.5125 -1.7838 -1.2979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156568850.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:10 Heat of formation + Delta-G solvation = -37.396720 kcal Electronic energy + Delta-G solvation = -20496.766294 eV Core-core repulsion = 17114.992110 eV Total energy + Delta-G solvation = -3381.774184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.80312 -41.59016 -39.69680 -38.68096 -34.67287 -33.18319 -32.03889 -31.71281 -28.15933 -27.78190 -27.43650 -24.49473 -23.61396 -21.79635 -20.79024 -19.87051 -18.60362 -18.01931 -17.34264 -16.98219 -16.95332 -16.64945 -16.41577 -15.93538 -15.84542 -15.53808 -15.03640 -14.64931 -14.44687 -14.35944 -13.84570 -13.42175 -13.29919 -13.23244 -13.04825 -13.00843 -12.99215 -12.68940 -12.54440 -12.25926 -11.77217 -11.33413 -11.28358 -11.11099 -10.74952 -10.18062 -9.86051 -9.74491 -8.83810 -8.41231 -6.22108 -0.25529 0.19104 1.27784 1.35879 1.44448 1.51173 1.60878 1.74109 2.21768 2.72112 2.78773 2.91984 3.03283 3.36928 3.39181 3.79017 3.83526 3.89829 3.99324 4.20055 4.33040 4.36393 4.37894 4.45413 4.54583 4.71314 4.80068 4.87452 4.88296 5.13654 5.19251 5.25358 5.31718 5.36457 5.45004 5.81541 6.14119 6.38382 6.88414 6.99008 8.66440 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028832 B = 0.003396 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.910598 B = 8243.314112 C = 8434.218965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 F -0.204 7.204 4 C 0.078 3.922 5 N -0.652 5.652 6 C 0.588 3.412 7 O -0.586 6.586 8 C -0.155 4.155 9 C -0.073 4.073 10 C -0.119 4.119 11 C -0.062 4.062 12 C -0.127 4.127 13 S -0.097 6.097 14 C -0.535 4.535 15 H 0.069 0.931 16 C 0.018 3.982 17 N -0.907 5.907 18 Si 0.995 3.005 19 H -0.264 1.264 20 H -0.264 1.264 21 H -0.273 1.273 22 C -0.046 4.046 23 C 0.070 3.930 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.069 0.931 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.136 0.864 32 H 0.274 0.726 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.414 7.674 -1.328 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.063 3.937 3 F -0.184 7.184 4 C -0.044 4.044 5 N -0.386 5.386 6 C 0.381 3.619 7 O -0.467 6.467 8 C -0.160 4.160 9 C -0.091 4.091 10 C -0.138 4.138 11 C -0.083 4.083 12 C -0.238 4.238 13 S 0.137 5.863 14 C -0.683 4.683 15 H 0.087 0.913 16 C -0.187 4.187 17 N -0.543 5.543 18 Si 0.817 3.183 19 H -0.188 1.188 20 H -0.189 1.189 21 H -0.198 1.198 22 C -0.068 4.068 23 C -0.051 4.051 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.130 0.870 27 H 0.158 0.842 28 H 0.088 0.912 29 H 0.194 0.806 30 H 0.197 0.803 31 H 0.154 0.846 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.673 8.237 -0.839 26.975 hybrid contribution 0.201 -1.487 0.691 1.652 sum -25.472 6.750 -0.149 26.352 Atomic orbital electron populations 1.22082 0.87150 1.06360 1.05007 1.22225 0.96181 0.77905 0.97426 1.92869 1.87624 1.40946 1.96969 1.24033 0.88079 0.98620 0.93711 1.49373 1.09839 1.65657 1.13723 1.17967 0.80087 0.75530 0.88352 1.90751 1.64573 1.56198 1.35198 1.19866 0.94026 1.07862 0.94228 1.22119 1.01403 0.95377 0.90225 1.21606 0.93493 0.99026 0.99691 1.22128 0.95000 0.94108 0.97041 1.22490 1.00918 1.04541 0.95833 1.83540 0.98374 1.08580 1.95781 1.23098 0.95859 0.90661 1.58640 0.91294 1.26051 0.93889 1.05180 0.93575 1.70124 0.98368 1.38192 1.47654 0.84954 0.78808 0.76058 0.78478 1.18847 1.18927 1.19825 1.21617 0.93900 0.94303 0.97010 1.24335 0.88259 0.98848 0.93657 0.90051 0.89736 0.86990 0.84218 0.91227 0.80603 0.80286 0.84615 0.91669 0.87947 0.87775 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.67 71.98 0.70 0.29 16 2 C 0.08 0.94 2.39 -10.55 -0.03 0.92 16 3 F -0.20 -4.08 17.32 44.97 0.78 -3.30 16 4 C 0.08 1.24 8.11 83.17 0.67 1.91 16 5 N -0.65 -15.13 3.67 -862.27 -3.16 -18.29 16 6 C 0.59 20.73 8.01 86.79 0.69 21.43 16 7 O -0.59 -26.43 17.14 -3.87 -0.07 -26.50 16 8 C -0.15 -5.46 5.87 -20.11 -0.12 -5.58 16 9 C -0.07 -1.80 9.14 22.57 0.21 -1.60 16 10 C -0.12 -2.97 10.02 22.21 0.22 -2.74 16 11 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 12 C -0.13 -5.78 5.45 22.65 0.12 -5.66 16 13 S -0.10 -5.45 21.41 -56.49 -1.21 -6.66 16 14 C -0.54 -31.82 9.46 67.94 0.64 -31.18 16 15 H 0.07 4.04 7.79 -2.91 -0.02 4.02 16 16 C 0.02 1.05 5.49 84.84 0.47 1.52 16 17 N -0.91 -55.38 13.22 21.64 0.29 -55.09 16 18 Si 1.00 44.91 29.55 68.60 2.03 46.94 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C -0.05 -2.07 9.34 22.70 0.21 -1.86 16 23 C 0.07 0.77 5.56 83.09 0.46 1.23 16 24 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 25 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.11 -0.27 7.90 -2.38 -0.02 -0.29 16 27 H 0.14 1.24 8.10 -2.39 -0.02 1.22 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.18 2.51 4.21 -2.91 -0.01 2.49 16 30 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.10 5.17 7.66 -2.91 -0.02 5.15 16 34 H 0.10 1.08 6.81 -2.39 -0.02 1.06 16 35 H 0.15 0.35 7.92 -2.39 -0.02 0.34 16 Total: -1.00 -85.44 321.18 4.25 -81.19 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.11 Total: 5.03 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.48 Total: -23.31 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -2.88 Total: -73.39 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.07 Total: -26.50 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -1.21 Total: -6.66 kcal Total: -85.44 4.25 -81.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156568850.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.798 kcal (2) G-P(sol) polarization free energy of solvation -85.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds