Wall clock time and date at job start Tue Mar 31 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.43203 * 119.99892 * 58.52085 * 3 2 1 5 5 N 3.51033 * 140.68612 * 58.51618 * 2 1 3 6 6 C 1.41146 * 120.00359 * 238.51501 * 3 2 1 7 7 C 1.38978 * 119.99772 * 353.91265 * 6 3 2 8 8 H 1.08003 * 119.99933 * 335.95122 * 7 6 3 9 9 C 1.40845 * 120.00292 * 155.95468 * 7 6 3 10 10 N 1.30333 * 119.99639 * 358.75656 * 9 7 6 11 11 Si 1.86792 * 120.00208 * 178.75367 * 9 7 6 12 12 H 1.48506 * 109.46967 * 90.00020 * 11 9 7 13 13 H 1.48502 * 109.47410 * 209.99792 * 11 9 7 14 14 H 1.48503 * 109.47190 * 330.00017 * 11 9 7 15 15 N 1.38353 * 120.00387 * 173.91099 * 6 3 2 16 16 C 1.39131 * 120.00301 * 118.72706 * 15 6 3 17 17 C 1.39251 * 119.97929 * 354.25866 * 16 15 6 18 18 C 1.37587 * 120.25444 * 180.02562 * 17 16 15 19 19 C 1.39864 * 119.89705 * 0.02562 * 18 17 16 20 20 C 1.39989 * 119.52282 * 0.02562 * 19 18 17 21 21 C 1.37194 * 120.39380 * 359.97438 * 20 19 18 22 22 C 1.50817 * 106.29146 * 180.02562 * 20 19 18 23 23 O 1.45401 * 106.40976 * 359.96991 * 22 20 19 24 24 C 1.34485 * 108.96676 * 0.04906 * 23 22 20 25 25 O 1.21511 * 124.84714 * 179.97438 * 24 23 22 26 26 H 0.97004 * 119.99626 * 185.02710 * 10 9 7 27 27 H 0.97002 * 119.99559 * 298.72546 * 15 6 3 28 28 H 1.08008 * 119.87106 * 0.02562 * 17 16 15 29 29 H 1.08002 * 120.05101 * 180.02562 * 18 17 16 30 30 H 1.07997 * 120.05492 * 179.97438 * 21 20 19 31 31 H 1.08997 * 110.08161 * 119.22451 * 22 20 19 32 32 H 1.08999 * 110.07465 * 240.72132 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.6467 -1.0577 5 7 3.8520 -1.1615 -1.8966 6 6 3.2735 0.6393 1.0424 7 6 2.5842 1.3747 1.9992 8 1 1.6137 1.7877 1.7669 9 6 3.1513 1.5814 3.2718 10 7 4.3116 1.0627 3.5602 11 14 2.2404 2.5991 4.5461 12 1 1.3651 1.7123 5.3541 13 1 3.2210 3.2710 5.4361 14 1 1.4109 3.6229 3.8612 15 7 4.6513 0.5333 1.1116 16 6 5.4420 1.6750 1.0271 17 6 4.8563 2.9083 0.7534 18 6 5.6330 4.0408 0.6679 19 6 7.0161 3.9535 0.8561 20 6 7.5979 2.7099 1.1299 21 6 6.8198 1.5831 1.2142 22 6 9.0781 2.9585 1.2768 23 8 9.2777 4.3841 1.0716 24 6 8.0876 4.9615 0.8290 25 8 7.9211 6.1464 0.6172 26 1 4.6690 1.1430 4.4584 27 1 5.0659 -0.3370 1.2192 28 1 3.7883 2.9762 0.6075 29 1 5.1753 4.9958 0.4559 30 1 7.2744 0.6265 1.4253 31 1 9.4080 2.6745 2.2761 32 1 9.6290 2.3918 0.5261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:20 Heat of formation + Delta-G solvation = 10.901386 kcal Electronic energy + Delta-G solvation = -22151.440629 eV Core-core repulsion = 18656.236819 eV Total energy + Delta-G solvation = -3495.203811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.074 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21426 -39.06932 -37.22395 -36.69323 -35.34944 -34.87036 -33.77192 -31.42793 -31.37819 -28.68550 -27.42199 -26.94361 -23.59655 -22.55187 -21.01475 -20.55937 -19.08833 -17.53229 -17.37968 -16.98294 -16.62872 -16.56816 -16.26523 -15.28276 -14.57598 -14.08051 -13.72337 -13.51474 -13.36540 -13.11885 -12.87996 -12.81322 -12.65005 -12.53344 -12.42006 -11.97177 -11.83589 -11.73502 -11.65743 -11.20484 -11.08071 -11.00164 -10.86995 -10.70235 -10.22120 -10.03478 -9.97490 -8.69760 -8.38035 -7.91260 -6.99918 -5.65646 1.03779 1.61718 1.97433 2.61396 2.68499 2.71459 2.91823 3.25012 3.28437 3.58654 3.72869 3.90954 4.02334 4.10172 4.14239 4.32795 4.41147 4.98361 4.99000 5.14550 5.22733 5.39321 5.56648 5.64713 5.81327 6.04559 6.08623 6.17760 6.37611 6.45398 6.59298 6.82489 6.87899 6.94146 7.17355 7.45904 7.58751 7.74759 8.01895 8.21578 8.79309 8.97011 9.03120 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.005746 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.175857 B = 4871.430625 C = 5966.559349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.323 3.677 3 C -0.303 4.303 4 C 0.307 3.693 5 N -0.528 5.528 6 C 0.371 3.629 7 C -0.374 4.374 8 H 0.113 0.887 9 C 0.071 3.929 10 N -0.722 5.722 11 Si 0.926 3.074 12 H -0.257 1.257 13 H -0.266 1.266 14 H -0.247 1.247 15 N -0.642 5.642 16 C 0.307 3.693 17 C -0.193 4.193 18 C 0.011 3.989 19 C -0.280 4.280 20 C -0.060 4.060 21 C -0.175 4.175 22 C 0.095 3.905 23 O -0.332 6.332 24 C 0.527 3.473 25 O -0.477 6.477 26 H 0.303 0.697 27 H 0.405 0.595 28 H 0.145 0.855 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 2.305 5.882 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.208 5.208 2 C 0.014 3.986 3 C -0.321 4.321 4 C -0.001 4.001 5 N -0.210 5.210 6 C 0.267 3.733 7 C -0.402 4.402 8 H 0.131 0.869 9 C -0.161 4.161 10 N -0.341 5.341 11 Si 0.747 3.253 12 H -0.181 1.181 13 H -0.190 1.190 14 H -0.170 1.170 15 N -0.258 5.258 16 C 0.199 3.801 17 C -0.215 4.215 18 C -0.009 4.009 19 C -0.284 4.284 20 C -0.061 4.061 21 C -0.198 4.198 22 C 0.021 3.979 23 O -0.248 6.248 24 C 0.372 3.628 25 O -0.364 6.364 26 H 0.115 0.885 27 H 0.242 0.758 28 H 0.163 0.837 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.129 0.871 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.077 2.156 4.639 8.733 hybrid contribution 0.047 -0.043 1.172 1.173 sum 7.124 2.113 5.811 9.433 Atomic orbital electron populations 1.81085 1.12188 1.16259 1.11272 1.24668 0.91296 0.90942 0.91675 1.12962 0.83111 1.32553 1.03469 1.25209 0.92524 0.90849 0.91495 1.81104 1.09806 1.17072 1.12970 1.16776 0.80268 0.88114 0.88132 1.20378 1.03406 1.22144 0.94226 0.86898 1.26505 0.94395 0.94355 1.00810 1.69466 1.13711 1.27645 1.23251 0.85891 0.80131 0.80261 0.78985 1.18144 1.18994 1.16986 1.41593 1.04077 1.06827 1.73335 1.17614 0.89191 0.86915 0.86419 1.20926 1.01475 0.90689 1.08420 1.20479 0.90376 0.98355 0.91681 1.20260 0.95249 0.94256 1.18606 1.20270 0.94813 0.94051 0.96976 1.19413 0.91467 0.97618 1.11286 1.22293 0.93256 0.78250 1.04132 1.87196 1.32125 1.22834 1.82596 1.20506 0.81947 0.87420 0.72928 1.90834 1.83716 1.15531 1.46348 0.88460 0.75776 0.83688 0.85445 0.85474 0.87118 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.72 18.54 41.84 0.78 -10.94 16 2 C 0.32 6.80 14.01 -22.47 -0.31 6.49 16 3 C -0.30 -5.96 5.88 -104.94 -0.62 -6.58 16 4 C 0.31 6.34 14.83 -22.46 -0.33 6.00 16 5 N -0.53 -11.50 18.54 41.85 0.78 -10.73 16 6 C 0.37 6.69 4.93 -83.54 -0.41 6.28 16 7 C -0.37 -6.71 6.74 -38.32 -0.26 -6.96 16 8 H 0.11 2.07 7.20 -52.48 -0.38 1.69 16 9 C 0.07 1.18 5.11 -17.20 -0.09 1.09 16 10 N -0.72 -11.87 10.85 55.60 0.60 -11.27 16 11 Si 0.93 13.62 29.57 -169.99 -5.03 8.59 16 12 H -0.26 -3.88 7.11 56.52 0.40 -3.47 16 13 H -0.27 -3.91 7.11 56.52 0.40 -3.51 16 14 H -0.25 -3.72 7.11 56.52 0.40 -3.32 16 15 N -0.64 -10.43 3.25 -8.14 -0.03 -10.46 16 16 C 0.31 4.83 5.18 -83.76 -0.43 4.40 16 17 C -0.19 -3.11 8.71 -39.44 -0.34 -3.45 16 18 C 0.01 0.16 10.09 -39.21 -0.40 -0.23 16 19 C -0.28 -4.38 6.27 -105.02 -0.66 -5.04 16 20 C -0.06 -0.81 6.37 -104.29 -0.66 -1.47 16 21 C -0.18 -2.41 9.87 -39.55 -0.39 -2.80 16 22 C 0.10 1.01 7.93 36.06 0.29 1.30 16 23 O -0.33 -4.78 11.14 -39.56 -0.44 -5.22 16 24 C 0.53 8.81 8.57 34.34 0.29 9.10 16 25 O -0.48 -9.29 18.04 -18.95 -0.34 -9.63 16 26 H 0.30 4.59 8.29 -40.82 -0.34 4.25 16 27 H 0.41 6.17 8.83 -40.82 -0.36 5.81 16 28 H 0.15 2.38 6.17 -52.48 -0.32 2.06 16 29 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -24.76 308.62 -5.25 -30.00 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -1.89 Total: 6.88 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -4.33 Total: 8.13 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 2.13 Total: -43.40 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.78 Total: -14.86 kcal Atomic # 14 Polarization: 13.62 SS G_CDS: -5.03 Total: 8.59 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -24.76 -5.25 -30.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.904 kcal (2) G-P(sol) polarization free energy of solvation -24.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds