Wall clock time and date at job start Tue Mar 31 2020 06:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86796 * 120.00080 * 2 1 4 4 H 1.48509 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47242 * 299.99985 * 3 2 1 6 6 H 1.48506 * 109.47096 * 59.99948 * 3 2 1 7 7 C 1.39888 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99903 * 177.32887 * 7 2 1 9 9 C 1.41005 * 119.99803 * 357.32894 * 7 2 1 10 10 C 1.40747 * 120.30939 * 34.35184 * 9 7 2 11 11 C 1.36425 * 119.94922 * 180.25763 * 10 9 7 12 12 C 1.38941 * 120.61263 * 359.71584 * 11 10 9 13 13 C 1.38087 * 120.63715 * 0.02562 * 12 11 10 14 14 C 1.38840 * 120.02474 * 359.97438 * 13 12 11 15 15 N 1.38611 * 120.30465 * 180.02562 * 14 13 12 16 16 C 1.39610 * 119.99896 * 7.11465 * 15 14 13 17 17 C 1.38263 * 119.98109 * 248.29880 * 16 15 14 18 18 C 1.38706 * 120.08315 * 179.73084 * 17 16 15 19 19 C 1.36153 * 120.66626 * 0.56230 * 18 17 16 20 20 C 1.41307 * 120.62032 * 359.71179 * 19 18 17 21 21 C 1.45393 * 129.28315 * 180.02562 * 20 19 18 22 22 C 1.31863 * 114.89141 * 179.97438 * 21 20 19 23 23 S 1.75305 * 111.36156 * 359.97438 * 22 21 20 24 24 C 1.39572 * 118.87464 * 359.97438 * 20 19 18 25 25 H 0.96992 * 119.99853 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.02656 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.68956 * 179.74115 * 11 10 9 28 28 H 1.07997 * 119.68046 * 180.02562 * 12 11 10 29 29 H 1.08002 * 119.98854 * 180.02562 * 13 12 11 30 30 H 0.96998 * 119.99848 * 187.38752 * 15 14 13 31 31 H 1.07993 * 119.95856 * 0.02562 * 17 16 15 32 32 H 1.07994 * 119.66737 * 180.29293 * 18 17 16 33 33 H 1.07998 * 119.69063 * 179.72708 * 19 18 17 34 34 H 1.07999 * 122.55591 * 359.95203 * 21 20 19 35 35 H 1.08000 * 124.32172 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0085 -1.2114 0.0005 8 1 3.0876 -1.2119 -0.0430 9 6 1.3046 -2.4319 0.0580 10 6 0.0541 -2.5611 -0.5748 11 6 -0.6230 -3.7437 -0.5101 12 6 -0.0873 -4.8293 0.1716 13 6 1.1400 -4.7317 0.7968 14 6 1.8519 -3.5406 0.7477 15 7 3.0846 -3.4363 1.3728 16 6 3.6842 -4.5687 1.9273 17 6 3.8175 -4.6782 3.2991 18 6 4.4078 -5.8048 3.8525 19 6 4.8718 -6.8075 3.0569 20 6 4.7557 -6.7231 1.6511 21 6 5.1800 -7.6712 0.6338 22 6 4.9290 -7.3030 -0.6073 23 16 4.1373 -5.7399 -0.6618 24 6 4.1564 -5.5939 1.0909 25 1 -0.4849 0.8400 -0.0004 26 1 -0.3713 -1.7233 -1.1073 27 1 -1.5842 -3.8369 -0.9936 28 1 -0.6361 -5.7586 0.2130 29 1 1.5468 -5.5823 1.3235 30 1 3.5289 -2.5759 1.4284 31 1 3.4574 -3.8877 3.9407 32 1 4.5043 -5.8855 4.9251 33 1 5.3327 -7.6757 3.5044 34 1 5.6642 -8.6057 0.8761 35 1 5.1784 -7.8900 -1.4789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175385922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:37 Heat of formation + Delta-G solvation = 70.945016 kcal Electronic energy + Delta-G solvation = -20328.651079 eV Core-core repulsion = 17382.344170 eV Total energy + Delta-G solvation = -2946.306909 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.57649 -37.83107 -35.46274 -33.95583 -33.48561 -30.10721 -29.17198 -29.10954 -27.31985 -25.07973 -23.43089 -22.35883 -20.97450 -20.32502 -19.93105 -17.63276 -17.24079 -16.29273 -15.95784 -15.49166 -14.88712 -14.78765 -14.26543 -13.96862 -13.71268 -13.40565 -12.78169 -12.59110 -12.37946 -12.24845 -11.95859 -11.57254 -11.34676 -11.19810 -11.05716 -11.02205 -10.89107 -10.41876 -10.26592 -9.66406 -9.57780 -9.51248 -9.16592 -8.95050 -8.29176 -7.35026 -7.25746 -6.62332 -6.35609 -4.25101 0.96787 1.49348 1.88057 2.38876 2.47764 2.83626 3.10515 3.13905 3.15369 3.23501 3.93434 3.99805 4.31061 4.76107 4.77288 5.14253 5.29371 5.41001 5.50213 5.68357 5.76192 5.94348 6.09353 6.16688 6.26471 6.45623 6.49564 6.61912 6.63258 6.71246 6.97203 7.05258 7.18418 7.30433 7.50290 7.71365 7.88226 8.16203 8.20906 8.42912 8.69478 8.77276 8.98260 9.07057 10.36249 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.005253 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.933603 B = 5329.254849 C = 5737.055114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.467 4.467 8 H 0.070 0.930 9 C 0.069 3.931 10 C -0.125 4.125 11 C -0.145 4.145 12 C -0.188 4.188 13 C -0.157 4.157 14 C 0.101 3.899 15 N -0.698 5.698 16 C 0.220 3.780 17 C -0.134 4.134 18 C -0.104 4.104 19 C -0.106 4.106 20 C -0.072 4.072 21 C -0.128 4.128 22 C -0.209 4.209 23 S 0.129 5.871 24 C -0.151 4.151 25 H 0.275 0.725 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.407 0.593 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.531 -9.620 2.998 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.499 4.499 8 H 0.088 0.912 9 C 0.065 3.935 10 C -0.145 4.145 11 C -0.164 4.164 12 C -0.208 4.208 13 C -0.179 4.179 14 C 0.005 3.995 15 N -0.328 5.328 16 C 0.120 3.880 17 C -0.157 4.157 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.081 4.081 21 C -0.159 4.159 22 C -0.344 4.344 23 S 0.395 5.605 24 C -0.269 4.269 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.246 0.754 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.811 -8.683 1.719 11.805 hybrid contribution 0.916 0.120 1.239 1.546 sum 8.727 -8.563 2.958 12.579 Atomic orbital electron populations 1.69791 1.07108 1.28275 1.39134 1.25740 0.94850 1.00708 0.92843 0.86254 0.80499 0.81478 0.78345 1.18802 1.20097 1.20172 1.19145 0.94038 0.90060 1.46690 0.91153 1.17250 0.93693 0.91004 0.91557 1.21091 0.96416 0.96237 1.00782 1.20405 0.99041 0.94496 1.02478 1.20201 0.96905 0.97763 1.05946 1.20104 0.96556 0.95710 1.05563 1.17936 0.86493 0.96101 0.99019 1.41456 1.20249 1.07415 1.63699 1.16904 0.93450 0.87550 0.90088 1.21301 1.01945 0.99006 0.93495 1.20494 0.98732 0.93662 0.99558 1.20532 1.01830 0.99357 0.90917 1.19211 1.01118 0.93543 0.94184 1.20837 1.03640 1.00193 0.91217 1.25276 1.06081 1.02006 1.00990 1.84759 1.60515 1.14717 1.00546 1.23223 1.05827 1.00197 0.97674 0.91406 0.85422 0.89604 0.89551 0.89485 0.75382 0.85279 0.85834 0.86206 0.84426 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.13 10.63 55.55 0.59 -20.53 16 2 C 0.07 1.81 5.41 -17.33 -0.09 1.72 16 3 Si 0.91 18.85 29.56 -169.99 -5.02 13.83 16 4 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.47 -11.97 8.25 -37.92 -0.31 -12.28 16 8 H 0.07 1.73 7.09 -52.49 -0.37 1.36 16 9 C 0.07 1.80 5.56 -106.63 -0.59 1.20 16 10 C -0.12 -3.24 8.60 -39.29 -0.34 -3.58 16 11 C -0.14 -3.44 9.96 -39.97 -0.40 -3.84 16 12 C -0.19 -4.31 10.03 -39.38 -0.40 -4.70 16 13 C -0.16 -3.61 8.94 -39.41 -0.35 -3.96 16 14 C 0.10 2.39 6.42 -83.30 -0.53 1.85 16 15 N -0.70 -14.43 5.25 -7.85 -0.04 -14.47 16 16 C 0.22 4.04 4.81 -83.46 -0.40 3.63 16 17 C -0.13 -2.11 9.95 -39.40 -0.39 -2.50 16 18 C -0.10 -1.37 9.94 -40.16 -0.40 -1.77 16 19 C -0.11 -1.40 10.04 -39.17 -0.39 -1.79 16 20 C -0.07 -1.09 6.04 -105.39 -0.64 -1.73 16 21 C -0.13 -1.68 10.39 -38.64 -0.40 -2.08 16 22 C -0.21 -2.80 11.02 28.83 0.32 -2.48 16 23 S 0.13 2.19 22.94 -107.50 -2.47 -0.28 16 24 C -0.15 -2.66 5.39 -38.24 -0.21 -2.87 16 25 H 0.27 6.57 8.30 -40.82 -0.34 6.24 16 26 H 0.13 3.45 6.16 -52.49 -0.32 3.13 16 27 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.09 1.94 6.57 -52.49 -0.35 1.59 16 30 H 0.41 8.29 7.30 -40.82 -0.30 8.00 16 31 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -27.90 312.30 -11.20 -39.10 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -3.43 Total: 12.83 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: -5.53 Total: -35.18 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.55 Total: -35.00 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.47 Total: -0.28 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.90 -11.20 -39.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175385922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.043 kcal (2) G-P(sol) polarization free energy of solvation -27.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds