Wall clock time and date at job start Tue Mar 31 2020 06:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86796 * 120.00080 * 2 1 4 4 H 1.48509 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47242 * 299.99985 * 3 2 1 6 6 H 1.48506 * 109.47096 * 59.99948 * 3 2 1 7 7 C 1.39888 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99903 * 177.32887 * 7 2 1 9 9 C 1.41005 * 119.99803 * 357.32894 * 7 2 1 10 10 C 1.40747 * 120.30939 * 34.35184 * 9 7 2 11 11 C 1.36425 * 119.94922 * 180.25763 * 10 9 7 12 12 C 1.38941 * 120.61263 * 359.71584 * 11 10 9 13 13 C 1.38087 * 120.63715 * 0.02562 * 12 11 10 14 14 C 1.38840 * 120.02474 * 359.97438 * 13 12 11 15 15 N 1.38611 * 120.30465 * 180.02562 * 14 13 12 16 16 C 1.39610 * 119.99896 * 7.11465 * 15 14 13 17 17 C 1.38263 * 119.98109 * 248.29880 * 16 15 14 18 18 C 1.38706 * 120.08315 * 179.73084 * 17 16 15 19 19 C 1.36153 * 120.66626 * 0.56230 * 18 17 16 20 20 C 1.41307 * 120.62032 * 359.71179 * 19 18 17 21 21 C 1.45393 * 129.28315 * 180.02562 * 20 19 18 22 22 C 1.31863 * 114.89141 * 179.97438 * 21 20 19 23 23 S 1.75305 * 111.36156 * 359.97438 * 22 21 20 24 24 C 1.39572 * 118.87464 * 359.97438 * 20 19 18 25 25 H 0.96992 * 119.99853 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.02656 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.68956 * 179.74115 * 11 10 9 28 28 H 1.07997 * 119.68046 * 180.02562 * 12 11 10 29 29 H 1.08002 * 119.98854 * 180.02562 * 13 12 11 30 30 H 0.96998 * 119.99848 * 187.38752 * 15 14 13 31 31 H 1.07993 * 119.95856 * 0.02562 * 17 16 15 32 32 H 1.07994 * 119.66737 * 180.29293 * 18 17 16 33 33 H 1.07998 * 119.69063 * 179.72708 * 19 18 17 34 34 H 1.07999 * 122.55591 * 359.95203 * 21 20 19 35 35 H 1.08000 * 124.32172 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0085 -1.2114 0.0005 8 1 3.0876 -1.2119 -0.0430 9 6 1.3046 -2.4319 0.0580 10 6 0.0541 -2.5611 -0.5748 11 6 -0.6230 -3.7437 -0.5101 12 6 -0.0873 -4.8293 0.1716 13 6 1.1400 -4.7317 0.7968 14 6 1.8519 -3.5406 0.7477 15 7 3.0846 -3.4363 1.3728 16 6 3.6842 -4.5687 1.9273 17 6 3.8175 -4.6782 3.2991 18 6 4.4078 -5.8048 3.8525 19 6 4.8718 -6.8075 3.0569 20 6 4.7557 -6.7231 1.6511 21 6 5.1800 -7.6712 0.6338 22 6 4.9290 -7.3030 -0.6073 23 16 4.1373 -5.7399 -0.6618 24 6 4.1564 -5.5939 1.0909 25 1 -0.4849 0.8400 -0.0004 26 1 -0.3713 -1.7233 -1.1073 27 1 -1.5842 -3.8369 -0.9936 28 1 -0.6361 -5.7586 0.2130 29 1 1.5468 -5.5823 1.3235 30 1 3.5289 -2.5759 1.4284 31 1 3.4574 -3.8877 3.9407 32 1 4.5043 -5.8855 4.9251 33 1 5.3327 -7.6757 3.5044 34 1 5.6642 -8.6057 0.8761 35 1 5.1784 -7.8900 -1.4789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175385922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:36 Heat of formation + Delta-G solvation = 58.356794 kcal Electronic energy + Delta-G solvation = -20329.196945 eV Core-core repulsion = 17382.344170 eV Total energy + Delta-G solvation = -2946.852776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87673 -39.48410 -36.82722 -35.41023 -35.21369 -31.76024 -30.87338 -30.25524 -28.92114 -26.95634 -24.57307 -23.75375 -22.68597 -21.81582 -21.27717 -19.15250 -18.87515 -18.02742 -17.26785 -16.74854 -16.58472 -15.97683 -15.87791 -15.35142 -14.82734 -14.76669 -14.47418 -14.35284 -14.06104 -13.73848 -13.29336 -12.97388 -12.89596 -12.80910 -12.60663 -12.40377 -12.20276 -12.06376 -11.53612 -11.46904 -11.39750 -11.02907 -11.02082 -10.34389 -9.45877 -9.18476 -8.63176 -8.46323 -8.11519 -6.18313 -0.16081 0.30589 0.69133 1.02383 1.24330 1.27356 1.38919 1.42384 1.49544 1.53011 2.24965 2.74190 2.82354 2.91623 3.73228 3.77648 4.08734 4.18560 4.39739 4.44336 4.50051 4.60878 4.64687 4.82468 4.87303 5.04121 5.09231 5.14690 5.29891 5.40783 5.45996 5.47676 5.58453 5.64038 5.84251 5.92120 6.05911 6.25395 6.34644 6.58110 6.90004 6.96326 7.16321 7.21511 8.51469 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.005253 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.933603 B = 5329.254849 C = 5737.055114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.029 3.971 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.489 4.489 8 H 0.069 0.931 9 C 0.032 3.968 10 C -0.147 4.147 11 C -0.157 4.157 12 C -0.184 4.184 13 C -0.164 4.164 14 C 0.115 3.885 15 N -0.698 5.698 16 C 0.179 3.821 17 C -0.135 4.135 18 C -0.100 4.100 19 C -0.091 4.091 20 C -0.084 4.084 21 C -0.120 4.120 22 C -0.198 4.198 23 S 0.047 5.953 24 C -0.167 4.167 25 H 0.279 0.721 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.403 0.597 31 H 0.132 0.868 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.400 -11.997 4.751 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.521 4.521 8 H 0.087 0.913 9 C 0.028 3.972 10 C -0.168 4.168 11 C -0.177 4.177 12 C -0.203 4.203 13 C -0.186 4.186 14 C 0.016 3.984 15 N -0.327 5.327 16 C 0.081 3.919 17 C -0.158 4.158 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.093 4.093 21 C -0.150 4.150 22 C -0.331 4.331 23 S 0.312 5.688 24 C -0.285 4.285 25 H 0.090 0.910 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.240 0.760 31 H 0.149 0.851 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.197 0.803 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 9.710 -11.102 3.497 15.158 hybrid contribution 0.427 0.650 0.797 1.113 sum 10.136 -10.452 4.294 15.180 Atomic orbital electron populations 1.69888 1.08490 1.29267 1.40125 1.26557 0.95607 1.03819 0.92138 0.85185 0.79161 0.77031 0.78426 1.18382 1.19594 1.19607 1.19303 0.94017 0.90836 1.47952 0.91334 1.17569 0.94427 0.92233 0.92989 1.21046 0.97284 0.96630 1.01810 1.20589 0.99866 0.94117 1.03101 1.20534 0.96859 0.98379 1.04566 1.20201 0.96707 0.95738 1.05979 1.18015 0.87328 0.95423 0.97602 1.41400 1.19459 1.08315 1.63506 1.17205 0.95840 0.87586 0.91283 1.21513 1.01609 1.00171 0.92468 1.20909 0.97305 0.92262 1.01597 1.21050 0.99904 1.00261 0.89888 1.19734 1.00667 0.93123 0.95747 1.21236 1.02584 1.00908 0.90271 1.25508 1.05351 0.99677 1.02588 1.84982 1.62911 1.18843 1.02110 1.23283 1.07003 1.01045 0.97150 0.91025 0.87408 0.87714 0.86852 0.88705 0.75954 0.85059 0.81987 0.82057 0.80295 0.78984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.87 10.63 21.82 0.23 -45.64 16 2 C 0.03 1.52 5.41 85.23 0.46 1.98 16 3 Si 0.98 39.77 29.56 68.60 2.03 41.80 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.49 -26.29 8.25 23.35 0.19 -26.10 16 8 H 0.07 3.56 7.09 -2.91 -0.02 3.54 16 9 C 0.03 1.75 5.56 -21.16 -0.12 1.63 16 10 C -0.15 -8.02 8.60 22.46 0.19 -7.82 16 11 C -0.16 -7.66 9.96 22.01 0.22 -7.44 16 12 C -0.18 -8.42 10.03 22.40 0.22 -8.19 16 13 C -0.16 -7.61 8.94 22.38 0.20 -7.42 16 14 C 0.11 5.60 6.42 39.04 0.25 5.85 16 15 N -0.70 -29.88 5.25 -178.74 -0.94 -30.82 16 16 C 0.18 6.58 4.81 38.46 0.19 6.76 16 17 C -0.13 -4.05 9.95 22.39 0.22 -3.82 16 18 C -0.10 -2.25 9.94 21.90 0.22 -2.04 16 19 C -0.09 -1.98 10.04 22.54 0.23 -1.75 16 20 C -0.08 -2.30 6.04 -20.36 -0.12 -2.42 16 21 C -0.12 -2.69 10.39 23.30 0.24 -2.45 16 22 C -0.20 -4.83 11.02 67.01 0.74 -4.09 16 23 S 0.05 1.62 22.94 -56.49 -1.30 0.33 16 24 C -0.17 -5.79 5.39 23.14 0.12 -5.66 16 25 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 26 H 0.11 6.21 6.16 -2.91 -0.02 6.19 16 27 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 28 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.09 4.22 6.57 -2.91 -0.02 4.20 16 30 H 0.40 17.31 7.30 -92.71 -0.68 16.63 16 31 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -63.95 312.30 3.94 -60.02 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 0.45 Total: 37.30 kcal Atomic # 6 Polarization: -66.44 SS G_CDS: 3.46 Total: -62.98 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -0.71 Total: -76.46 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.30 Total: 0.33 kcal Total: -63.95 3.94 -60.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175385922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.374 kcal (2) G-P(sol) polarization free energy of solvation -63.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds