Wall clock time and date at job start Tue Mar 31 2020 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86796 * 119.99903 * 2 1 4 4 H 1.48509 * 109.46948 * 271.17440 * 3 2 1 5 5 H 1.48496 * 109.47298 * 31.17342 * 3 2 1 6 6 H 1.48502 * 109.47285 * 151.17713 * 3 2 1 7 7 C 1.39930 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99501 * 343.41291 * 7 2 1 9 9 C 1.41406 * 119.99941 * 163.41697 * 7 2 1 10 10 C 1.40795 * 120.20285 * 327.66066 * 9 7 2 11 11 C 1.37657 * 119.89484 * 180.02562 * 10 9 7 12 12 C 1.38513 * 120.32639 * 359.72746 * 11 10 9 13 13 C 1.39323 * 120.42127 * 0.55198 * 12 11 10 14 14 N 1.39694 * 119.95084 * 179.72069 * 13 12 11 15 15 C 1.39823 * 120.00184 * 317.70689 * 14 13 12 16 16 C 1.38159 * 119.98039 * 352.21122 * 15 14 13 17 17 C 1.38750 * 120.09795 * 179.97438 * 16 15 14 18 18 C 1.36110 * 120.65411 * 0.02562 * 17 16 15 19 19 C 1.41320 * 120.60457 * 359.97438 * 18 17 16 20 20 C 1.45389 * 129.28364 * 179.97438 * 19 18 17 21 21 C 1.31860 * 114.89033 * 180.27014 * 20 19 18 22 22 S 1.75303 * 111.36005 * 359.63353 * 21 20 19 23 23 C 1.39569 * 118.86832 * 0.02562 * 19 18 17 24 24 C 1.38340 * 120.09163 * 359.44775 * 13 12 11 25 25 H 0.97005 * 119.99970 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.05275 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.83420 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.78998 * 180.27594 * 12 11 10 29 29 H 0.97006 * 119.99616 * 137.70524 * 14 13 12 30 30 H 1.07999 * 119.94995 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.67021 * 179.97438 * 17 16 15 32 32 H 1.07999 * 119.69544 * 180.02562 * 18 17 16 33 33 H 1.07999 * 122.54918 * 0.02562 * 20 19 18 34 34 H 1.07997 * 124.31604 * 179.71428 * 21 20 19 35 35 H 1.07998 * 120.16173 * 180.25203 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4649 2.0607 -1.3999 5 1 1.4524 2.6453 0.7247 6 1 3.5521 1.4332 0.6750 7 6 2.0080 -1.2118 -0.0005 8 1 1.5016 -2.1277 0.2661 9 6 3.3779 -1.2372 -0.3501 10 6 3.8847 -0.3250 -1.2953 11 6 5.2193 -0.3556 -1.6312 12 6 6.0685 -1.2762 -1.0397 13 6 5.5801 -2.1888 -0.1070 14 7 6.4442 -3.1168 0.4792 15 6 7.3985 -3.7748 -0.3028 16 6 7.3835 -3.6306 -1.6768 17 6 8.3296 -4.2819 -2.4551 18 6 9.2800 -5.0679 -1.8792 19 6 9.3218 -5.2355 -0.4766 20 6 10.2420 -6.0212 0.3295 21 6 10.0164 -5.9801 1.6280 22 16 8.6448 -4.9557 2.0057 23 6 8.3714 -4.5816 0.3088 24 6 4.2420 -2.1735 0.2435 25 1 -0.4850 0.8401 -0.0004 26 1 3.2274 0.3976 -1.7560 27 1 5.6071 0.3448 -2.3561 28 1 7.1150 -1.2897 -1.3064 29 1 6.3821 -3.3048 1.4288 30 1 6.6347 -3.0094 -2.1456 31 1 8.3112 -4.1647 -3.5285 32 1 10.0092 -5.5674 -2.4998 33 1 11.0465 -6.5978 -0.1027 34 1 10.6027 -6.5089 2.3649 35 1 3.8630 -2.8777 0.9693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175386205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:45 Heat of formation + Delta-G solvation = 54.719029 kcal Electronic energy + Delta-G solvation = -19750.374003 eV Core-core repulsion = 16803.363482 eV Total energy + Delta-G solvation = -2947.010521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.08248 -39.65483 -37.29565 -35.58418 -35.03900 -32.28311 -31.67349 -30.12827 -29.02046 -27.12607 -24.68148 -23.77971 -22.85942 -22.31288 -21.26243 -19.37955 -19.19551 -17.81371 -17.64181 -16.86194 -16.60138 -16.16997 -15.87896 -15.69244 -15.24797 -14.94649 -14.60315 -14.55464 -14.26939 -13.94179 -13.57587 -13.17752 -12.88008 -12.81895 -12.71647 -12.55066 -12.31195 -12.18758 -11.86088 -11.64849 -11.57828 -11.35884 -11.01049 -10.13129 -9.56280 -9.48769 -9.06324 -8.90024 -7.98112 -6.56096 -0.17835 0.32327 0.58475 0.74191 0.85997 1.09479 1.27357 1.40956 1.45137 1.50633 2.12456 2.31439 2.57354 2.86781 3.43824 3.72025 3.99991 4.15128 4.26812 4.38289 4.44785 4.50953 4.58820 4.63840 4.82657 4.88786 4.96696 5.02243 5.05401 5.14493 5.25250 5.44815 5.48085 5.63859 5.70088 5.73568 5.84278 5.91374 6.05831 6.29220 6.53136 6.58576 6.72054 6.83008 8.18859 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.003736 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.812583 B = 7492.569628 C = 7986.395243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.049 3.951 3 Si 0.968 3.032 4 H -0.251 1.251 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.053 0.947 9 C 0.096 3.904 10 C -0.260 4.260 11 C -0.058 4.058 12 C -0.243 4.243 13 C 0.192 3.808 14 N -0.684 5.684 15 C 0.224 3.776 16 C -0.199 4.199 17 C -0.072 4.072 18 C -0.135 4.135 19 C -0.053 4.053 20 C -0.124 4.124 21 C -0.179 4.179 22 S 0.046 5.954 23 C -0.217 4.217 24 C -0.248 4.248 25 H 0.294 0.706 26 H 0.103 0.897 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.404 0.596 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.199 0.801 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.787 -7.879 -1.194 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.165 4.165 3 Si 0.791 3.209 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.519 4.519 8 H 0.071 0.929 9 C 0.093 3.907 10 C -0.280 4.280 11 C -0.077 4.077 12 C -0.264 4.264 13 C 0.098 3.902 14 N -0.306 5.306 15 C 0.120 3.880 16 C -0.224 4.224 17 C -0.093 4.093 18 C -0.156 4.156 19 C -0.062 4.062 20 C -0.154 4.154 21 C -0.312 4.312 22 S 0.308 5.692 23 C -0.335 4.335 24 C -0.271 4.271 25 H 0.104 0.896 26 H 0.121 0.879 27 H 0.154 0.846 28 H 0.142 0.858 29 H 0.240 0.760 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.195 0.805 34 H 0.216 0.784 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 19.788 -7.359 0.156 21.112 hybrid contribution -0.162 0.074 -0.493 0.524 sum 19.625 -7.285 -0.336 20.936 Atomic orbital electron populations 1.69718 1.09202 1.31488 1.37485 1.26806 0.95325 1.04144 0.90227 0.85476 0.79111 0.76303 0.80028 1.17596 1.20470 1.18075 1.19424 0.93896 0.95402 1.43139 0.92925 1.17619 0.92301 0.91210 0.89609 1.21250 0.96843 1.05745 1.04121 1.20856 0.92390 0.96767 0.97688 1.20675 0.99568 1.00162 1.06014 1.17468 0.88194 0.89265 0.95317 1.42186 1.35125 1.43083 1.10206 1.17321 0.87831 0.91664 0.91212 1.21167 1.03645 1.06530 0.91101 1.20786 0.93054 0.94558 1.00878 1.20841 1.01201 1.01752 0.91840 1.19598 0.94442 0.97310 0.94845 1.21258 1.00732 1.00988 0.92409 1.25413 1.01165 1.04146 1.00525 1.84105 1.31968 1.50003 1.03156 1.22369 1.03253 1.09538 0.98297 1.20929 0.91675 1.06771 1.07691 0.89562 0.87896 0.84575 0.85763 0.76042 0.85022 0.82975 0.82801 0.80462 0.78444 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.19 13.93 21.82 0.30 -46.89 16 2 C 0.05 2.66 5.41 85.25 0.46 3.12 16 3 Si 0.97 42.80 24.58 68.60 1.69 44.48 16 4 H -0.25 -10.32 6.55 99.48 0.65 -9.67 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.26 -11.65 7.02 99.48 0.70 -10.95 16 7 C -0.49 -27.82 9.57 23.46 0.22 -27.60 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 C 0.10 4.92 5.05 -21.31 -0.11 4.81 16 10 C -0.26 -12.05 7.25 22.76 0.16 -11.89 16 11 C -0.06 -2.30 10.02 22.20 0.22 -2.08 16 12 C -0.24 -9.35 7.39 22.60 0.17 -9.19 16 13 C 0.19 7.91 5.83 38.17 0.22 8.13 16 14 N -0.68 -24.46 5.48 -180.02 -0.99 -25.45 16 15 C 0.22 7.34 6.45 38.38 0.25 7.59 16 16 C -0.20 -6.11 8.04 22.37 0.18 -5.93 16 17 C -0.07 -1.72 9.94 21.90 0.22 -1.50 16 18 C -0.13 -2.88 10.04 22.53 0.23 -2.65 16 19 C -0.05 -1.29 6.04 -20.36 -0.12 -1.41 16 20 C -0.12 -2.22 10.39 23.30 0.24 -1.98 16 21 C -0.18 -3.14 11.02 67.01 0.74 -2.40 16 22 S 0.05 1.10 22.73 -56.49 -1.28 -0.18 16 23 C -0.22 -6.26 6.41 23.12 0.15 -6.11 16 24 C -0.25 -11.77 9.71 22.86 0.22 -11.55 16 25 H 0.29 14.58 8.30 -92.70 -0.77 13.81 16 26 H 0.10 4.74 4.83 -2.91 -0.01 4.73 16 27 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 28 H 0.12 4.29 6.70 -2.91 -0.02 4.27 16 29 H 0.40 13.54 8.38 -92.70 -0.78 12.76 16 30 H 0.13 4.39 5.37 -2.91 -0.02 4.38 16 31 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -62.88 305.94 3.47 -59.41 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.30 Total: 29.27 kcal Atomic # 6 Polarization: -64.10 SS G_CDS: 3.45 Total: -60.65 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -0.68 Total: -72.33 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.69 Total: 44.48 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -1.28 Total: -0.18 kcal Total: -62.88 3.47 -59.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175386205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.130 kcal (2) G-P(sol) polarization free energy of solvation -62.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds