Wall clock time and date at job start Tue Mar 31 2020 07:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50709 * 120.00189 * 2 1 4 4 S 1.81397 * 109.46844 * 115.00224 * 3 2 1 5 5 C 1.81406 * 102.99650 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.46993 * 180.02562 * 5 4 3 7 7 O 1.21295 * 120.00304 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00364 * 179.97438 * 6 5 4 9 9 C 1.40003 * 120.00633 * 175.68406 * 8 6 5 10 10 C 1.39365 * 119.91580 * 215.21190 * 9 8 6 11 11 C 1.38360 * 120.47246 * 180.02562 * 10 9 8 12 12 C 1.38004 * 120.28766 * 0.02562 * 11 10 9 13 13 F 1.35097 * 120.09194 * 179.97438 * 12 11 10 14 14 C 1.41006 * 119.81353 * 359.97351 * 12 11 10 15 15 C 1.41295 * 120.22776 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00209 * 324.96836 * 15 14 12 17 17 C 1.39928 * 119.99294 * 145.23911 * 15 14 12 18 18 N 1.30848 * 120.00292 * 4.45103 * 17 15 14 19 19 Si 1.86800 * 119.99590 * 184.44568 * 17 15 14 20 20 H 1.48502 * 109.47090 * 90.00045 * 19 17 15 21 21 H 1.48502 * 109.47263 * 210.00161 * 19 17 15 22 22 H 1.48506 * 109.47121 * 330.00135 * 19 17 15 23 23 C 1.38146 * 119.90757 * 35.44617 * 9 8 6 24 24 H 1.08007 * 119.99850 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00028 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00207 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46803 * 355.00102 * 3 2 1 28 28 H 1.09004 * 109.46905 * 235.00387 * 3 2 1 29 29 H 1.08997 * 109.47474 * 59.99776 * 5 4 3 30 30 H 1.08998 * 109.46934 * 299.99988 * 5 4 3 31 31 H 0.97001 * 119.99559 * 355.68606 * 8 6 5 32 32 H 1.08002 * 119.76322 * 359.97438 * 10 9 8 33 33 H 1.08004 * 119.85533 * 179.97438 * 11 10 9 34 34 H 0.96998 * 120.00040 * 179.97438 * 18 17 15 35 35 H 1.08000 * 120.14562 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 16 2.9918 1.4673 1.5500 5 6 3.8177 3.0718 1.3650 6 6 4.6437 3.3561 2.5929 7 8 4.6722 2.5553 3.5035 8 7 5.3510 4.5001 2.6794 9 6 6.0457 4.8066 3.8556 10 6 6.1436 6.1303 4.2803 11 6 6.8278 6.4462 5.4406 12 6 7.4222 5.4520 6.1907 13 9 8.0898 5.7650 7.3227 14 6 7.3307 4.1085 5.7723 15 6 7.9365 3.0837 6.5333 16 1 8.8693 3.2701 7.0445 17 6 7.3304 1.8254 6.6199 18 7 6.2500 1.5705 5.9272 19 14 8.0638 0.5096 7.7245 20 1 7.4691 0.6142 9.0812 21 1 7.7716 -0.8316 7.1580 22 1 9.5340 0.7001 7.8124 23 6 6.6366 3.7964 4.5896 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3586 2.1317 -0.0895 28 1 2.7556 1.3251 -0.8419 29 1 3.0686 3.8539 1.2415 30 1 4.4658 3.0480 0.4890 31 1 5.3786 5.1113 1.9266 32 1 5.6827 6.9153 3.6990 33 1 6.8978 7.4755 5.7602 34 1 5.8301 0.6982 5.9870 35 1 6.5641 2.7712 4.2578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180560786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:43 Heat of formation + Delta-G solvation = -36.143153 kcal Electronic energy + Delta-G solvation = -20444.551932 eV Core-core repulsion = 17062.832106 eV Total energy + Delta-G solvation = -3381.719825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.17497 -39.52605 -36.99089 -34.96007 -34.24680 -33.13311 -30.35325 -29.69427 -27.71710 -27.15932 -25.31552 -21.90415 -21.09223 -20.23732 -19.58318 -17.81890 -16.75263 -16.33868 -15.99206 -15.80765 -15.38586 -15.24999 -14.83725 -14.21763 -14.14603 -13.96032 -13.58612 -13.41623 -12.92492 -12.74373 -12.37982 -12.18578 -11.76988 -11.73184 -11.45396 -11.43954 -11.08816 -10.94100 -10.58517 -10.30094 -10.18260 -9.67890 -9.41793 -9.24056 -9.10504 -8.90233 -7.58216 -7.42811 -6.90602 -6.47379 -4.37439 1.19667 2.25602 2.49576 2.65046 2.80403 3.12278 3.15895 3.19765 3.28528 3.67686 4.03206 4.53589 4.67459 4.75473 4.99411 5.03261 5.11948 5.22322 5.34400 5.48174 5.62065 5.88724 6.11020 6.31699 6.37595 6.42128 6.75015 6.90150 6.99111 7.28103 7.43012 7.53310 7.72400 8.04397 8.11370 8.30547 8.52592 8.82532 8.87560 8.88547 10.33675 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015859 B = 0.004299 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.123825 B = 6511.158356 C = 8105.882286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.136 4.136 3 C -0.087 4.087 4 S -0.164 6.164 5 C -0.128 4.128 6 C 0.505 3.495 7 O -0.456 6.456 8 N -0.668 5.668 9 C 0.130 3.870 10 C -0.235 4.235 11 C -0.115 4.115 12 C -0.032 4.032 13 F -0.163 7.163 14 C 0.091 3.909 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.067 3.933 18 N -0.767 5.767 19 Si 0.914 3.086 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.131 4.131 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.396 0.604 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.283 0.717 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 -0.013 -13.439 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.234 4.234 4 S 0.065 5.935 5 C -0.280 4.280 6 C 0.288 3.712 7 O -0.326 6.326 8 N -0.314 5.314 9 C 0.038 3.962 10 C -0.257 4.257 11 C -0.135 4.135 12 C -0.053 4.053 13 F -0.142 7.142 14 C 0.087 3.913 15 C -0.486 4.486 16 H 0.098 0.902 17 C -0.152 4.152 18 N -0.391 5.391 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.152 4.152 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.230 0.770 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.092 -1.511 -11.931 14.495 hybrid contribution 0.201 0.868 -0.829 1.216 sum -7.891 -0.643 -12.759 15.016 Atomic orbital electron populations 1.23903 0.95613 1.02224 0.99676 1.22358 0.95703 0.96879 1.00629 1.22629 1.01742 0.99378 0.99690 1.87931 1.58863 1.23625 1.23129 1.23535 1.02504 1.00282 1.01647 1.19675 0.80760 0.82852 0.87951 1.91006 1.60319 1.43901 1.37382 1.43209 1.49709 1.22224 1.16209 1.17652 0.96663 0.93899 0.87996 1.19874 1.11380 0.93893 1.00517 1.20243 1.00497 0.96984 0.95769 1.18035 1.05832 0.94537 0.86865 1.91267 1.79529 1.93627 1.49826 1.17566 0.92418 0.89814 0.91550 1.19410 1.07784 0.94867 1.26587 0.90231 1.25951 0.94559 0.99053 0.95680 1.69832 1.14687 1.22955 1.31640 0.86215 0.80236 0.79334 0.80351 1.19480 1.20195 1.18684 1.21691 0.99550 0.99929 0.94023 0.88376 0.87860 0.86422 0.89979 0.89423 0.87723 0.87708 0.77004 0.88360 0.87837 0.90587 0.82424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 14.32 29.02 0.42 -1.00 16 2 C -0.14 -1.29 9.52 -36.02 -0.34 -1.63 16 3 C -0.09 -0.85 6.38 36.01 0.23 -0.62 16 4 S -0.16 -2.37 20.86 -107.50 -2.24 -4.61 16 5 C -0.13 -1.64 6.43 36.00 0.23 -1.40 16 6 C 0.50 9.24 7.69 -10.99 -0.08 9.15 16 7 O -0.46 -10.78 13.25 5.54 0.07 -10.71 16 8 N -0.67 -11.70 5.34 -9.90 -0.05 -11.75 16 9 C 0.13 2.91 6.29 -83.74 -0.53 2.39 16 10 C -0.24 -4.95 9.96 -39.12 -0.39 -5.34 16 11 C -0.12 -2.60 10.00 -39.62 -0.40 -3.00 16 12 C -0.03 -0.84 7.31 -38.62 -0.28 -1.12 16 13 F -0.16 -4.21 16.82 2.25 0.04 -4.17 16 14 C 0.09 2.50 5.55 -106.78 -0.59 1.91 16 15 C -0.46 -12.72 8.70 -37.79 -0.33 -13.05 16 16 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 17 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 18 N -0.77 -21.02 10.55 55.55 0.59 -20.43 16 19 Si 0.91 19.90 29.56 -169.99 -5.03 14.87 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.13 -3.43 7.30 -38.71 -0.28 -3.71 16 24 H 0.10 0.73 7.84 -52.48 -0.41 0.32 16 25 H 0.10 0.71 8.06 -52.49 -0.42 0.28 16 26 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 27 H 0.08 0.70 7.79 -51.93 -0.40 0.29 16 28 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.40 5.10 8.82 -40.82 -0.36 4.74 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 34 H 0.28 7.30 8.30 -40.82 -0.34 6.96 16 35 H 0.16 4.43 4.34 -52.49 -0.23 4.21 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -31.99 324.14 -8.09 -40.08 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -3.91 Total: 7.59 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.44 Total: -15.75 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.53 Total: -32.18 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.04 Total: -4.17 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.24 Total: -4.61 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.99 -8.09 -40.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180560786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.933 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds