Wall clock time and date at job start Tue Mar 31 2020 07:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50709 * 120.00189 * 2 1 4 4 S 1.81397 * 109.46844 * 115.00224 * 3 2 1 5 5 C 1.81406 * 102.99650 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.46993 * 180.02562 * 5 4 3 7 7 O 1.21295 * 120.00304 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00364 * 179.97438 * 6 5 4 9 9 C 1.40003 * 120.00633 * 175.68406 * 8 6 5 10 10 C 1.39365 * 119.91580 * 215.21190 * 9 8 6 11 11 C 1.38360 * 120.47246 * 180.02562 * 10 9 8 12 12 C 1.38004 * 120.28766 * 0.02562 * 11 10 9 13 13 F 1.35097 * 120.09194 * 179.97438 * 12 11 10 14 14 C 1.41006 * 119.81353 * 359.97351 * 12 11 10 15 15 C 1.41295 * 120.22776 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00209 * 324.96836 * 15 14 12 17 17 C 1.39928 * 119.99294 * 145.23911 * 15 14 12 18 18 N 1.30848 * 120.00292 * 4.45103 * 17 15 14 19 19 Si 1.86800 * 119.99590 * 184.44568 * 17 15 14 20 20 H 1.48502 * 109.47090 * 90.00045 * 19 17 15 21 21 H 1.48502 * 109.47263 * 210.00161 * 19 17 15 22 22 H 1.48506 * 109.47121 * 330.00135 * 19 17 15 23 23 C 1.38146 * 119.90757 * 35.44617 * 9 8 6 24 24 H 1.08007 * 119.99850 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00028 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00207 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46803 * 355.00102 * 3 2 1 28 28 H 1.09004 * 109.46905 * 235.00387 * 3 2 1 29 29 H 1.08997 * 109.47474 * 59.99776 * 5 4 3 30 30 H 1.08998 * 109.46934 * 299.99988 * 5 4 3 31 31 H 0.97001 * 119.99559 * 355.68606 * 8 6 5 32 32 H 1.08002 * 119.76322 * 359.97438 * 10 9 8 33 33 H 1.08004 * 119.85533 * 179.97438 * 11 10 9 34 34 H 0.96998 * 120.00040 * 179.97438 * 18 17 15 35 35 H 1.08000 * 120.14562 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 16 2.9918 1.4673 1.5500 5 6 3.8177 3.0718 1.3650 6 6 4.6437 3.3561 2.5929 7 8 4.6722 2.5553 3.5035 8 7 5.3510 4.5001 2.6794 9 6 6.0457 4.8066 3.8556 10 6 6.1436 6.1303 4.2803 11 6 6.8278 6.4462 5.4406 12 6 7.4222 5.4520 6.1907 13 9 8.0898 5.7650 7.3227 14 6 7.3307 4.1085 5.7723 15 6 7.9365 3.0837 6.5333 16 1 8.8693 3.2701 7.0445 17 6 7.3304 1.8254 6.6199 18 7 6.2500 1.5705 5.9272 19 14 8.0638 0.5096 7.7245 20 1 7.4691 0.6142 9.0812 21 1 7.7716 -0.8316 7.1580 22 1 9.5340 0.7001 7.8124 23 6 6.6366 3.7964 4.5896 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3586 2.1317 -0.0895 28 1 2.7556 1.3251 -0.8419 29 1 3.0686 3.8539 1.2415 30 1 4.4658 3.0480 0.4890 31 1 5.3786 5.1113 1.9266 32 1 5.6827 6.9153 3.6990 33 1 6.8978 7.4755 5.7602 34 1 5.8301 0.6982 5.9870 35 1 6.5641 2.7712 4.2578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180560786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:42 Heat of formation + Delta-G solvation = -55.661478 kcal Electronic energy + Delta-G solvation = -20445.398310 eV Core-core repulsion = 17062.832106 eV Total energy + Delta-G solvation = -3382.566204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.16836 -41.08697 -38.77013 -36.04107 -35.63560 -34.90869 -31.71635 -31.55960 -29.07830 -28.16071 -27.26241 -23.66532 -22.84307 -21.37128 -20.79963 -19.59144 -18.17023 -17.95458 -17.76900 -17.16249 -16.86239 -16.51894 -16.10096 -15.96020 -15.89258 -15.12848 -14.78615 -14.68964 -14.41893 -14.38557 -13.92527 -13.58738 -13.44230 -13.31037 -12.93786 -12.89188 -12.70491 -12.41410 -12.12867 -12.11033 -11.53108 -11.13317 -11.07893 -10.80444 -10.55789 -10.16982 -9.35580 -8.75947 -8.64169 -8.37861 -6.43225 0.28636 0.68116 0.94692 1.34021 1.41683 1.42976 1.48662 1.77721 1.85794 2.20745 2.30522 2.76785 3.48441 3.78012 3.89165 4.05979 4.09103 4.12636 4.27657 4.36480 4.46592 4.65710 4.67178 5.00854 5.02259 5.08166 5.16452 5.28554 5.64436 5.66969 5.75059 5.79517 5.82704 6.12563 6.27478 6.57050 6.68462 6.88114 6.92151 7.42547 8.38746 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015859 B = 0.004299 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.123825 B = 6511.158356 C = 8105.882286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.162 4.162 3 C -0.059 4.059 4 S -0.260 6.260 5 C -0.101 4.101 6 C 0.496 3.504 7 O -0.514 6.514 8 N -0.653 5.653 9 C 0.135 3.865 10 C -0.212 4.212 11 C -0.113 4.113 12 C -0.063 4.063 13 F -0.171 7.171 14 C 0.056 3.944 15 C -0.500 4.500 16 H 0.068 0.932 17 C 0.026 3.974 18 N -0.799 5.799 19 Si 0.982 3.018 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.258 1.258 23 C -0.155 4.155 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.423 0.577 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.281 0.719 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.559 1.617 -15.814 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C -0.207 4.207 4 S -0.032 6.032 5 C -0.251 4.251 6 C 0.282 3.718 7 O -0.387 6.387 8 N -0.302 5.302 9 C 0.041 3.959 10 C -0.233 4.233 11 C -0.132 4.132 12 C -0.084 4.084 13 F -0.150 7.150 14 C 0.052 3.948 15 C -0.530 4.530 16 H 0.086 0.914 17 C -0.190 4.190 18 N -0.424 5.424 19 Si 0.803 3.197 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.181 1.181 23 C -0.177 4.177 24 H 0.127 0.873 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.262 0.738 32 H 0.167 0.833 33 H 0.157 0.843 34 H 0.092 0.908 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.639 0.168 -14.362 17.297 hybrid contribution 0.550 0.501 -0.253 0.786 sum -9.089 0.669 -14.615 17.223 Atomic orbital electron populations 1.24144 0.95243 1.03389 0.97209 1.22434 0.96304 0.96812 1.02597 1.22604 1.01477 1.00056 0.96514 1.88332 1.60746 1.26023 1.28075 1.23378 1.02744 0.99640 0.99366 1.20657 0.80376 0.81815 0.88972 1.91011 1.62075 1.45660 1.40004 1.43096 1.48637 1.22845 1.15584 1.17778 0.95386 0.93743 0.88983 1.20418 1.08925 0.94345 0.99599 1.20679 0.99083 0.97892 0.95542 1.18399 1.07284 0.95034 0.87648 1.91231 1.79870 1.93574 1.50315 1.17932 0.93553 0.90879 0.92424 1.19551 1.08391 0.96533 1.28533 0.91408 1.26756 0.94731 1.00711 0.96768 1.69974 1.15991 1.23245 1.33160 0.85201 0.79502 0.76673 0.78303 1.19049 1.19113 1.18140 1.21569 1.01273 1.00081 0.94799 0.87281 0.86675 0.86991 0.88120 0.87758 0.84083 0.84235 0.73829 0.83265 0.84340 0.90811 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 14.32 67.78 0.97 -1.25 16 2 C -0.16 -2.79 9.52 25.65 0.24 -2.55 16 3 C -0.06 -1.01 6.38 71.24 0.45 -0.55 16 4 S -0.26 -7.33 20.86 -56.49 -1.18 -8.50 16 5 C -0.10 -2.28 6.43 71.23 0.46 -1.82 16 6 C 0.50 17.57 7.69 87.66 0.67 18.25 16 7 O -0.51 -24.99 13.25 -3.08 -0.04 -25.03 16 8 N -0.65 -21.25 5.34 -303.61 -1.62 -22.87 16 9 C 0.14 5.86 6.29 38.09 0.24 6.10 16 10 C -0.21 -8.19 9.96 22.57 0.22 -7.96 16 11 C -0.11 -4.84 10.00 22.24 0.22 -4.62 16 12 C -0.06 -3.33 7.31 22.89 0.17 -3.16 16 13 F -0.17 -9.02 16.82 44.97 0.76 -8.26 16 14 C 0.06 3.21 5.55 -21.26 -0.12 3.09 16 15 C -0.50 -29.51 8.70 23.43 0.20 -29.30 16 16 H 0.07 3.96 7.84 -2.91 -0.02 3.94 16 17 C 0.03 1.44 5.42 85.25 0.46 1.90 16 18 N -0.80 -46.29 10.55 21.82 0.23 -46.06 16 19 Si 0.98 42.71 29.56 68.60 2.03 44.74 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 C -0.16 -8.42 7.30 22.83 0.17 -8.26 16 24 H 0.11 1.28 7.84 -2.91 -0.02 1.26 16 25 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 26 H 0.11 2.00 8.06 -2.91 -0.02 1.98 16 27 H 0.10 1.33 7.79 -2.39 -0.02 1.32 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.14 2.19 8.14 -2.39 -0.02 2.18 16 30 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.42 9.03 8.82 -92.71 -0.82 8.21 16 32 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.28 15.40 8.30 -92.71 -0.77 14.63 16 35 H 0.13 7.94 4.34 -2.91 -0.01 7.93 16 Total: -1.00 -76.47 324.14 4.85 -71.62 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.30 Total: 24.51 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 4.37 Total: -30.13 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.39 Total: -68.94 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.03 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.76 Total: -8.26 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -7.33 SS G_CDS: -1.18 Total: -8.50 kcal Total: -76.47 4.85 -71.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180560786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.962 kcal (2) G-P(sol) polarization free energy of solvation -76.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds