Wall clock time and date at job start Tue Mar 31 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48494 * 109.46842 * 269.99507 * 3 2 1 5 5 H 1.48496 * 109.47086 * 29.99463 * 3 2 1 6 6 H 1.48502 * 109.47363 * 149.99413 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00379 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99907 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47387 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47351 * 179.97438 * 10 9 7 12 12 S 1.65600 * 119.99843 * 165.00365 * 11 10 9 13 13 O 1.42095 * 106.40185 * 311.46017 * 12 11 10 14 14 O 1.42100 * 106.40353 * 178.54069 * 12 11 10 15 15 C 1.76199 * 107.21778 * 65.00239 * 12 11 10 16 16 C 1.38961 * 119.68638 * 90.00355 * 15 12 11 17 17 C 1.36594 * 120.81893 * 180.02562 * 16 15 12 18 18 C 1.39293 * 119.84659 * 359.97438 * 17 16 15 19 19 N 1.37034 * 133.84465 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.46588 * 0.02577 * 19 18 17 21 21 N 1.39872 * 109.07457 * 179.75051 * 19 18 17 22 22 C 1.30244 * 110.08717 * 0.24714 * 21 19 18 23 23 C 1.40817 * 119.41963 * 0.15339 * 18 17 16 24 24 C 1.36473 * 119.68365 * 270.39994 * 15 12 11 25 25 H 0.97004 * 120.00102 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47086 * 60.00637 * 9 7 2 27 27 H 1.09006 * 109.47383 * 300.00650 * 9 7 2 28 28 H 1.09003 * 109.46534 * 60.00242 * 10 9 7 29 29 H 1.08994 * 109.47317 * 300.01020 * 10 9 7 30 30 H 0.96995 * 120.00162 * 345.00450 * 11 10 9 31 31 H 1.08007 * 119.59516 * 359.97438 * 16 15 12 32 32 H 1.07993 * 120.08144 * 180.02562 * 17 16 15 33 33 H 1.08001 * 126.10965 * 179.97438 * 22 21 19 34 34 H 1.07993 * 120.18339 * 359.52138 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4865 -2.6365 0.0009 12 16 6.3145 -4.0219 0.3719 13 8 5.7336 -4.5291 1.5653 14 8 7.6953 -3.7084 0.2520 15 6 5.9593 -5.1962 -0.8927 16 6 6.7682 -5.2585 -2.0209 17 6 6.5137 -6.1596 -3.0155 18 6 5.4318 -7.0296 -2.9026 19 7 4.9225 -8.0196 -3.7015 20 1 5.2823 -8.2905 -4.5607 21 7 3.8042 -8.5813 -3.0767 22 6 3.5864 -7.9921 -1.9357 23 6 4.6094 -6.9662 -1.7614 24 6 4.8877 -6.0305 -0.7586 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8753 -0.6803 -0.8888 28 1 3.6586 -3.1501 -0.8893 29 1 3.6578 -3.1506 0.8906 30 1 5.9715 -1.8251 -0.2164 31 1 7.6080 -4.5856 -2.1130 32 1 7.1504 -6.1979 -3.8870 33 1 2.7903 -8.2213 -1.2428 34 1 4.2646 -5.9768 0.1219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186024420.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:39 Heat of formation + Delta-G solvation = 7.160947 kcal Electronic energy + Delta-G solvation = -20865.986320 eV Core-core repulsion = 17506.064263 eV Total energy + Delta-G solvation = -3359.922057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57212 -37.53858 -37.08358 -35.68202 -35.54141 -32.83035 -32.69736 -30.30804 -29.95022 -29.69970 -24.57873 -23.67908 -22.91478 -22.03853 -20.92034 -19.36343 -18.36868 -17.83282 -17.08823 -16.80894 -16.41939 -15.62752 -15.17787 -15.00164 -14.54722 -14.26790 -14.21390 -14.01181 -13.86322 -13.36061 -12.65230 -12.44384 -12.12450 -12.00762 -11.89369 -11.64860 -11.61488 -11.34632 -11.26511 -10.90642 -10.72333 -10.48290 -10.07004 -9.89559 -9.35276 -9.13891 -9.01186 -8.61262 -8.57827 -6.11993 -4.12017 0.51812 0.64507 0.84408 2.16693 2.31939 3.10000 3.26223 3.34839 3.37006 3.42011 3.92329 4.10926 4.28998 4.38448 4.46991 4.57446 4.85552 5.03362 5.17609 5.22023 5.37819 5.58676 5.62919 5.80673 5.89224 6.03787 6.05265 6.25997 6.41644 6.50319 6.86924 7.11545 7.18594 7.21448 7.29710 7.68030 8.41566 8.91002 9.48894 11.00876 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.004486 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.303332 B = 6240.588223 C = 7280.693262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.018 4.018 10 C 0.126 3.874 11 N -1.115 6.115 12 S 2.698 3.302 13 O -0.958 6.958 14 O -0.970 6.970 15 C -0.711 4.711 16 C 0.017 3.983 17 C -0.161 4.161 18 C 0.170 3.830 19 N -0.509 5.509 20 H 0.441 0.559 21 N -0.254 5.254 22 C 0.098 3.902 23 C -0.205 4.205 24 C 0.080 3.920 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.019 0.981 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.416 0.584 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.205 0.795 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.893 -13.523 -6.166 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.094 0.906 9 C -0.057 4.057 10 C 0.001 3.999 11 N -0.876 5.876 12 S 2.787 3.213 13 O -0.948 6.948 14 O -0.960 6.960 15 C -0.798 4.798 16 C -0.005 4.005 17 C -0.183 4.183 18 C 0.051 3.949 19 N -0.222 5.222 20 H 0.286 0.714 21 N -0.067 5.067 22 C -0.101 4.101 23 C -0.214 4.214 24 C 0.058 3.942 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.250 0.750 31 H 0.164 0.836 32 H 0.152 0.848 33 H 0.222 0.778 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.730 -14.677 -6.249 20.409 hybrid contribution 0.590 1.447 -0.901 1.803 sum 13.320 -13.230 -7.149 20.089 Atomic orbital electron populations 1.69898 1.06300 1.27074 1.50453 1.24984 0.94734 0.99162 0.94319 0.86785 0.80449 0.83582 0.78510 1.20285 1.21290 1.18872 1.20952 0.88742 0.94851 1.51770 0.90592 1.19762 0.97628 0.91069 0.97249 1.21465 0.75134 1.02114 1.01197 1.55538 1.17514 1.26280 1.88265 1.01673 0.72736 0.72964 0.73903 1.93584 1.78680 1.80068 1.42505 1.93553 1.31440 1.83912 1.87140 1.30589 1.08090 1.21551 1.19593 1.20389 0.95742 0.94604 0.89728 1.19868 0.98143 0.98454 1.01874 1.19061 0.94618 0.90067 0.91112 1.46112 1.24971 1.30649 1.20481 0.71381 1.76660 1.01482 1.19658 1.08850 1.25297 0.97945 0.92392 0.94440 1.19994 1.00094 1.03360 0.97906 1.20286 0.91213 0.87261 0.95400 0.92566 0.95547 0.96281 0.92351 0.90594 0.74996 0.83607 0.84822 0.77818 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.52 -14.09 9.66 -34.44 -0.33 -14.43 16 8 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.02 -0.40 4.18 -27.88 -0.12 -0.51 16 10 C 0.13 2.25 6.16 -4.04 -0.02 2.22 16 11 N -1.11 -16.47 6.00 -10.62 -0.06 -16.53 16 12 S 2.70 38.47 5.72 -107.50 -0.62 37.86 16 13 O -0.96 -16.21 16.71 -57.17 -0.96 -17.16 16 14 O -0.97 -15.12 17.25 -57.17 -0.99 -16.11 16 15 C -0.71 -8.99 5.91 -39.95 -0.24 -9.23 16 16 C 0.02 0.19 9.44 -39.91 -0.38 -0.19 16 17 C -0.16 -1.60 10.03 -39.78 -0.40 -2.00 16 18 C 0.17 1.89 7.34 -84.17 -0.62 1.28 16 19 N -0.51 -4.99 7.37 32.36 0.24 -4.75 16 20 H 0.44 2.87 8.96 -182.77 -1.64 1.23 16 21 N -0.25 -2.84 12.55 31.87 0.40 -2.44 16 22 C 0.10 1.01 12.28 -15.15 -0.19 0.83 16 23 C -0.20 -2.45 6.37 -105.21 -0.67 -3.12 16 24 C 0.08 0.99 9.52 -39.58 -0.38 0.62 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 27 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 30 H 0.42 5.45 8.65 -34.47 -0.30 5.16 16 31 H 0.15 1.36 7.58 -52.48 -0.40 0.96 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.21 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.15 1.68 7.57 -52.49 -0.40 1.28 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -35.01 309.97 -9.40 -44.40 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.76 Total: 2.62 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -3.43 Total: -22.67 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 1.35 Total: -49.73 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.94 Total: -33.27 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: 38.47 SS G_CDS: -0.62 Total: 37.86 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.01 -9.40 -44.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186024420.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.563 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds