Wall clock time and date at job start Tue Mar 31 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48494 * 109.46842 * 269.99507 * 3 2 1 5 5 H 1.48496 * 109.47086 * 29.99463 * 3 2 1 6 6 H 1.48502 * 109.47363 * 149.99413 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00379 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99907 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47387 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47351 * 179.97438 * 10 9 7 12 12 S 1.65600 * 119.99843 * 165.00365 * 11 10 9 13 13 O 1.42095 * 106.40185 * 311.46017 * 12 11 10 14 14 O 1.42100 * 106.40353 * 178.54069 * 12 11 10 15 15 C 1.76199 * 107.21778 * 65.00239 * 12 11 10 16 16 C 1.38961 * 119.68638 * 90.00355 * 15 12 11 17 17 C 1.36594 * 120.81893 * 180.02562 * 16 15 12 18 18 C 1.39293 * 119.84659 * 359.97438 * 17 16 15 19 19 N 1.37034 * 133.84465 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.46588 * 0.02577 * 19 18 17 21 21 N 1.39872 * 109.07457 * 179.75051 * 19 18 17 22 22 C 1.30244 * 110.08717 * 0.24714 * 21 19 18 23 23 C 1.40817 * 119.41963 * 0.15339 * 18 17 16 24 24 C 1.36473 * 119.68365 * 270.39994 * 15 12 11 25 25 H 0.97004 * 120.00102 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47086 * 60.00637 * 9 7 2 27 27 H 1.09006 * 109.47383 * 300.00650 * 9 7 2 28 28 H 1.09003 * 109.46534 * 60.00242 * 10 9 7 29 29 H 1.08994 * 109.47317 * 300.01020 * 10 9 7 30 30 H 0.96995 * 120.00162 * 345.00450 * 11 10 9 31 31 H 1.08007 * 119.59516 * 359.97438 * 16 15 12 32 32 H 1.07993 * 120.08144 * 180.02562 * 17 16 15 33 33 H 1.08001 * 126.10965 * 179.97438 * 22 21 19 34 34 H 1.07993 * 120.18339 * 359.52138 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4865 -2.6365 0.0009 12 16 6.3145 -4.0219 0.3719 13 8 5.7336 -4.5291 1.5653 14 8 7.6953 -3.7084 0.2520 15 6 5.9593 -5.1962 -0.8927 16 6 6.7682 -5.2585 -2.0209 17 6 6.5137 -6.1596 -3.0155 18 6 5.4318 -7.0296 -2.9026 19 7 4.9225 -8.0196 -3.7015 20 1 5.2823 -8.2905 -4.5607 21 7 3.8042 -8.5813 -3.0767 22 6 3.5864 -7.9921 -1.9357 23 6 4.6094 -6.9662 -1.7614 24 6 4.8877 -6.0305 -0.7586 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8753 -0.6803 -0.8888 28 1 3.6586 -3.1501 -0.8893 29 1 3.6578 -3.1506 0.8906 30 1 5.9715 -1.8251 -0.2164 31 1 7.6080 -4.5856 -2.1130 32 1 7.1504 -6.1979 -3.8870 33 1 2.7903 -8.2213 -1.2428 34 1 4.2646 -5.9768 0.1219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186024420.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:38 Heat of formation + Delta-G solvation = -20.193310 kcal Electronic energy + Delta-G solvation = -20867.172490 eV Core-core repulsion = 17506.064263 eV Total energy + Delta-G solvation = -3361.108227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38535 -38.38441 -38.30921 -37.02040 -36.90326 -34.66667 -33.64769 -31.46533 -31.14620 -30.79472 -26.35437 -24.54509 -23.79048 -22.86595 -22.60211 -20.52104 -19.29306 -19.04088 -18.61443 -18.19647 -17.37748 -16.81399 -16.21593 -16.01482 -15.93322 -15.61342 -15.48872 -15.22047 -14.71300 -14.58415 -14.27694 -13.49630 -13.43710 -13.30173 -13.22261 -13.15806 -13.03547 -12.57334 -12.24280 -12.08686 -11.91496 -11.77247 -11.70933 -11.54493 -11.40078 -10.73715 -10.33517 -9.98510 -9.39272 -8.24788 -6.29499 -0.57582 -0.23036 -0.06755 1.36678 1.41248 1.44158 1.54703 1.59457 2.03855 2.40625 2.43949 2.82301 3.11456 3.22730 3.49116 3.62142 3.68273 4.04139 4.18008 4.22754 4.35709 4.54556 4.60324 4.72734 4.78587 4.92365 4.98369 5.06108 5.25124 5.42893 5.51033 5.58938 5.66696 6.14324 6.17058 6.31772 6.42540 6.78867 7.35104 8.91322 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.004486 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.303332 B = 6240.588223 C = 7280.693262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.531 4.531 8 H 0.042 0.958 9 C -0.019 4.019 10 C 0.136 3.864 11 N -1.110 6.110 12 S 2.718 3.282 13 O -0.989 6.989 14 O -0.981 6.981 15 C -0.715 4.715 16 C 0.005 3.995 17 C -0.152 4.152 18 C 0.162 3.838 19 N -0.500 5.500 20 H 0.454 0.546 21 N -0.273 5.273 22 C 0.097 3.903 23 C -0.226 4.226 24 C 0.068 3.932 25 H 0.266 0.734 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.425 0.575 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.232 0.768 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.904 -13.385 -7.311 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.570 4.570 8 H 0.060 0.940 9 C -0.058 4.058 10 C 0.010 3.990 11 N -0.872 5.872 12 S 2.810 3.190 13 O -0.979 6.979 14 O -0.971 6.971 15 C -0.806 4.806 16 C -0.016 4.016 17 C -0.175 4.175 18 C 0.043 3.957 19 N -0.215 5.215 20 H 0.302 0.698 21 N -0.085 5.085 22 C -0.101 4.101 23 C -0.235 4.235 24 C 0.046 3.954 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.261 0.739 31 H 0.182 0.818 32 H 0.186 0.814 33 H 0.249 0.751 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.779 -14.535 -7.392 22.007 hybrid contribution -0.065 1.254 -0.596 1.390 sum 14.713 -13.281 -7.988 21.370 Atomic orbital electron populations 1.70056 1.08320 1.28123 1.52522 1.25945 0.95531 1.03396 0.94142 0.85712 0.79709 0.78375 0.79188 1.19098 1.21560 1.16586 1.21334 0.91515 0.93582 1.50553 0.93988 1.19710 0.94358 0.93852 0.97892 1.21138 0.76771 0.99621 1.01442 1.55330 1.16043 1.27383 1.88423 1.00852 0.72008 0.72597 0.73552 1.93543 1.79105 1.80455 1.44787 1.93533 1.31930 1.84236 1.87433 1.30262 1.09104 1.21438 1.19810 1.20679 0.96113 0.95432 0.89424 1.20224 0.97736 0.97053 1.02476 1.19332 0.94888 0.90418 0.91095 1.46148 1.24461 1.30062 1.20853 0.69789 1.76634 1.02216 1.20311 1.09346 1.25813 0.98161 0.91563 0.94555 1.20249 1.01063 1.03884 0.98302 1.20408 0.91442 0.87660 0.95891 0.92551 0.95261 0.94727 0.91498 0.91284 0.73926 0.81822 0.81402 0.75147 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.81 13.96 21.45 0.30 -57.51 16 2 C 0.01 0.39 5.47 84.65 0.46 0.86 16 3 Si 0.95 42.16 27.47 68.60 1.88 44.04 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 7 C -0.53 -28.79 9.66 25.60 0.25 -28.55 16 8 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 9 C -0.02 -0.81 4.18 29.85 0.12 -0.69 16 10 C 0.14 4.74 6.16 86.38 0.53 5.27 16 11 N -1.11 -31.08 6.00 -187.50 -1.12 -32.20 16 12 S 2.72 74.56 5.72 -56.49 -0.32 74.24 16 13 O -0.99 -33.15 16.71 -128.00 -2.14 -35.29 16 14 O -0.98 -29.02 17.25 -128.00 -2.21 -31.23 16 15 C -0.72 -17.19 5.91 22.03 0.13 -17.06 16 16 C 0.01 0.11 9.44 22.06 0.21 0.32 16 17 C -0.15 -2.61 10.03 22.14 0.22 -2.39 16 18 C 0.16 3.29 7.34 39.22 0.29 3.58 16 19 N -0.50 -8.86 7.37 -51.53 -0.38 -9.24 16 20 H 0.45 4.95 8.96 -213.47 -1.91 3.04 16 21 N -0.27 -5.71 12.55 -53.09 -0.67 -6.38 16 22 C 0.10 1.89 12.28 86.92 1.07 2.96 16 23 C -0.23 -5.14 6.37 -20.24 -0.13 -5.27 16 24 C 0.07 1.63 9.52 22.27 0.21 1.85 16 25 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 26 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 27 H 0.03 1.37 7.57 -2.38 -0.02 1.35 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 2.49 7.75 -2.39 -0.02 2.48 16 30 H 0.42 10.21 8.65 -96.75 -0.84 9.37 16 31 H 0.16 2.59 7.58 -2.91 -0.02 2.57 16 32 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.23 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.15 3.43 7.57 -2.91 -0.02 3.41 16 Total: -1.00 -74.96 309.97 -2.93 -77.90 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -1.64 Total: 14.79 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.37 Total: -39.12 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -1.87 Total: -105.33 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -4.35 Total: -66.52 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Atomic # 16 Polarization: 74.56 SS G_CDS: -0.32 Total: 74.24 kcal Total: -74.96 -2.93 -77.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186024420.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.704 kcal (2) G-P(sol) polarization free energy of solvation -74.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds