Wall clock time and date at job start Tue Mar 31 2020 07:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47277 * 2 1 4 4 C 1.47206 * 109.47263 * 239.99990 * 2 1 3 5 5 N 2.60796 * 109.47101 * 239.99965 * 2 1 3 6 6 C 1.50702 * 109.47288 * 119.99894 * 2 1 3 7 7 C 1.38275 * 119.53607 * 165.00080 * 6 2 1 8 8 C 1.38489 * 119.24189 * 180.02562 * 7 6 2 9 9 C 1.39315 * 118.35952 * 359.97438 * 8 7 6 10 10 N 1.39708 * 120.49261 * 179.97438 * 9 8 7 11 11 S 1.65603 * 119.99996 * 75.21354 * 10 9 8 12 12 O 1.42093 * 106.40220 * 177.77503 * 11 10 9 13 13 O 1.42102 * 106.39871 * 310.69329 * 11 10 9 14 14 C 1.76194 * 107.21931 * 64.23180 * 11 10 9 15 15 H 1.08007 * 120.00118 * 5.17901 * 14 11 10 16 16 C 1.37885 * 120.00081 * 185.16970 * 14 11 10 17 17 N 1.31508 * 119.99879 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99755 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.47090 * 89.99687 * 18 16 14 20 20 H 1.48503 * 109.46668 * 209.99721 * 18 16 14 21 21 H 1.48500 * 109.47124 * 329.99547 * 18 16 14 22 22 C 1.38884 * 119.01267 * 359.97438 * 9 8 7 23 23 N 1.31815 * 120.65971 * 0.02820 * 22 9 8 24 24 H 1.09004 * 109.47121 * 299.99687 * 1 2 3 25 25 H 1.09003 * 109.47187 * 59.99792 * 1 2 3 26 26 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46923 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46679 * 300.00052 * 3 2 1 29 29 H 1.09000 * 109.47053 * 59.99687 * 3 2 1 30 30 H 1.08010 * 120.38006 * 0.02562 * 7 6 2 31 31 H 1.08006 * 120.82335 * 179.72447 * 8 7 6 32 32 H 0.96996 * 119.99923 * 255.20484 * 10 9 8 33 33 H 0.97004 * 119.99935 * 180.02562 * 17 16 14 34 34 H 1.08008 * 119.67241 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3992 -1.2294 -2.1294 6 6 2.0323 -0.7104 1.2305 7 6 3.3551 -1.1077 1.2959 8 6 3.8102 -1.7605 2.4293 9 6 2.9092 -1.9918 3.4664 10 7 3.3203 -2.6470 4.6298 11 16 4.2415 -1.8466 5.7493 12 8 4.4461 -2.7542 6.8233 13 8 5.3067 -1.2387 5.0317 14 6 3.2587 -0.5317 6.3894 15 1 2.2249 -0.4358 6.0917 16 6 3.8093 0.3747 7.2706 17 7 3.0756 1.3558 7.7487 18 14 5.5974 0.2091 7.7851 19 1 6.4555 0.9762 6.8468 20 1 5.7680 0.7422 9.1606 21 1 5.9900 -1.2228 7.7569 22 6 1.5961 -1.5614 3.3265 23 7 1.2046 -0.9435 2.2300 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 4.0259 -0.9111 0.4724 31 1 4.8372 -2.0859 2.5057 32 1 3.0662 -3.5706 4.7818 33 1 3.4630 1.9937 8.3683 34 1 0.8888 -1.7348 4.1240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192938801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:29 Heat of formation + Delta-G solvation = -19.151043 kcal Electronic energy + Delta-G solvation = -21303.233264 eV Core-core repulsion = 17942.170233 eV Total energy + Delta-G solvation = -3361.063031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.57654 -37.76066 -35.86248 -35.46414 -34.62717 -34.05822 -33.12016 -32.03777 -28.71252 -27.53581 -26.51762 -24.39356 -23.15066 -22.00220 -19.38786 -18.05404 -17.80758 -17.39304 -16.81896 -16.23184 -15.74807 -15.20557 -14.53302 -14.40431 -14.08501 -13.84940 -13.56942 -13.45075 -13.23603 -12.97955 -12.92560 -12.69100 -12.39273 -12.11478 -11.84948 -11.74112 -11.49595 -11.40976 -11.30973 -10.99614 -10.80795 -10.64720 -10.32260 -10.09008 -9.64358 -9.31184 -9.22525 -9.03211 -8.56632 -6.89021 -5.45107 0.98710 1.38508 1.88622 2.53867 2.59853 3.01353 3.10193 3.17765 3.52742 3.85603 3.87088 3.99946 4.23516 4.50245 4.63486 4.72062 4.90099 5.05524 5.11971 5.21943 5.28986 5.45521 5.56809 5.59735 5.69303 5.78029 5.93638 5.97145 6.08392 6.15432 6.22658 6.33950 6.76278 7.35272 7.38372 7.47029 7.99585 8.10472 8.60368 10.22915 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.004744 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.712206 B = 5900.419310 C = 6231.997341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.090 3.910 3 C -0.140 4.140 4 C 0.221 3.779 5 N -0.429 5.429 6 C 0.120 3.880 7 C -0.154 4.154 8 C -0.062 4.062 9 C 0.115 3.885 10 N -1.070 6.070 11 S 2.666 3.334 12 O -0.999 6.999 13 O -1.003 7.003 14 C -1.012 5.012 15 H 0.125 0.875 16 C 0.154 3.846 17 N -0.817 5.817 18 Si 0.814 3.186 19 H -0.245 1.245 20 H -0.256 1.256 21 H -0.233 1.233 22 C 0.114 3.886 23 N -0.460 5.460 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.146 0.854 32 H 0.416 0.584 33 H 0.282 0.718 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 -1.438 -11.703 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.085 3.915 3 C -0.198 4.198 4 C -0.097 4.097 5 N -0.104 5.104 6 C -0.019 4.019 7 C -0.175 4.175 8 C -0.090 4.090 9 C 0.018 3.982 10 N -0.821 5.821 11 S 2.769 3.231 12 O -0.989 6.989 13 O -0.992 6.992 14 C -1.147 5.147 15 H 0.142 0.858 16 C -0.066 4.066 17 N -0.446 5.446 18 Si 0.635 3.365 19 H -0.168 1.168 20 H -0.180 1.180 21 H -0.156 1.156 22 C -0.046 4.046 23 N -0.168 5.168 24 H 0.109 0.891 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.252 0.748 33 H 0.093 0.907 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.555 -1.923 -12.845 13.466 hybrid contribution 0.883 -0.040 1.027 1.355 sum -2.671 -1.963 -11.818 12.274 Atomic orbital electron populations 1.21734 0.89646 1.03682 1.03495 1.16974 0.97916 0.93915 0.82648 1.21947 1.02308 0.91442 1.04144 1.28888 0.93205 0.93470 0.94187 1.81199 1.08776 1.08830 1.11574 1.20462 0.90327 0.97242 0.93916 1.21768 0.96216 1.00338 0.99175 1.22012 1.00825 0.95173 0.91011 1.18272 0.94083 0.98083 0.87768 1.53342 1.73349 1.23954 1.31499 1.01813 0.73830 0.75255 0.72153 1.93491 1.85864 1.66849 1.52696 1.93403 1.54957 1.77492 1.73381 1.30291 1.13533 1.30055 1.40829 0.85756 1.24405 0.98050 0.92417 0.91758 1.69975 1.36939 1.11840 1.25830 0.87674 0.84473 0.83372 0.81000 1.16820 1.18047 1.15563 1.23170 0.94336 0.92426 0.94694 1.67345 1.36958 1.12313 1.00195 0.89076 0.91960 0.91583 0.91266 0.90918 0.89571 0.84928 0.83603 0.74755 0.90741 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 7.76 37.15 0.29 -0.83 16 2 C 0.09 0.93 0.80 -158.45 -0.13 0.80 16 3 C -0.14 -1.21 8.36 37.16 0.31 -0.90 16 4 C 0.22 2.59 12.79 -20.76 -0.27 2.32 16 5 N -0.43 -5.90 18.54 42.15 0.78 -5.12 16 6 C 0.12 1.58 5.54 -82.57 -0.46 1.12 16 7 C -0.15 -2.11 9.07 -39.48 -0.36 -2.47 16 8 C -0.06 -0.97 9.45 -39.09 -0.37 -1.34 16 9 C 0.12 1.93 5.82 -83.63 -0.49 1.44 16 10 N -1.07 -18.88 5.73 32.49 0.19 -18.69 16 11 S 2.67 62.71 4.18 -107.50 -0.45 62.26 16 12 O -1.00 -25.46 16.58 -57.17 -0.95 -26.41 16 13 O -1.00 -25.03 15.50 -57.17 -0.89 -25.92 16 14 C -1.01 -26.78 10.21 30.60 0.31 -26.47 16 15 H 0.12 3.28 8.06 -52.48 -0.42 2.86 16 16 C 0.15 4.25 5.47 -17.82 -0.10 4.15 16 17 N -0.82 -22.69 13.96 55.43 0.77 -21.91 16 18 Si 0.81 20.20 26.32 -169.99 -4.47 15.72 16 19 H -0.24 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.23 -5.88 5.89 56.52 0.33 -5.54 16 22 C 0.11 1.76 11.13 -17.32 -0.19 1.57 16 23 N -0.46 -6.59 9.01 -9.30 -0.08 -6.68 16 24 H 0.09 0.81 7.85 -51.93 -0.41 0.41 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.13 1.55 7.56 -52.48 -0.40 1.15 16 31 H 0.15 2.21 8.02 -52.48 -0.42 1.79 16 32 H 0.42 5.94 8.95 -34.47 -0.31 5.63 16 33 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.17 2.31 8.06 -52.48 -0.42 1.88 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -32.36 313.79 -5.51 -37.87 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.69 Total: 4.74 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.44 Total: -20.61 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 1.66 Total: -52.39 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -1.83 Total: -52.33 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.47 Total: 15.72 kcal Atomic # 16 Polarization: 62.71 SS G_CDS: -0.45 Total: 62.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.36 -5.51 -37.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.720 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds