Wall clock time and date at job start Tue Mar 31 2020 07:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47277 * 2 1 4 4 C 1.47206 * 109.47263 * 239.99990 * 2 1 3 5 5 N 2.60796 * 109.47101 * 239.99965 * 2 1 3 6 6 C 1.50702 * 109.47288 * 119.99894 * 2 1 3 7 7 C 1.38275 * 119.53607 * 165.00080 * 6 2 1 8 8 C 1.38489 * 119.24189 * 180.02562 * 7 6 2 9 9 C 1.39315 * 118.35952 * 359.97438 * 8 7 6 10 10 N 1.39708 * 120.49261 * 179.97438 * 9 8 7 11 11 S 1.65603 * 119.99996 * 75.21354 * 10 9 8 12 12 O 1.42093 * 106.40220 * 177.77503 * 11 10 9 13 13 O 1.42102 * 106.39871 * 310.69329 * 11 10 9 14 14 C 1.76194 * 107.21931 * 64.23180 * 11 10 9 15 15 H 1.08007 * 120.00118 * 5.17901 * 14 11 10 16 16 C 1.37885 * 120.00081 * 185.16970 * 14 11 10 17 17 N 1.31508 * 119.99879 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99755 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.47090 * 89.99687 * 18 16 14 20 20 H 1.48503 * 109.46668 * 209.99721 * 18 16 14 21 21 H 1.48500 * 109.47124 * 329.99547 * 18 16 14 22 22 C 1.38884 * 119.01267 * 359.97438 * 9 8 7 23 23 N 1.31815 * 120.65971 * 0.02820 * 22 9 8 24 24 H 1.09004 * 109.47121 * 299.99687 * 1 2 3 25 25 H 1.09003 * 109.47187 * 59.99792 * 1 2 3 26 26 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46923 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46679 * 300.00052 * 3 2 1 29 29 H 1.09000 * 109.47053 * 59.99687 * 3 2 1 30 30 H 1.08010 * 120.38006 * 0.02562 * 7 6 2 31 31 H 1.08006 * 120.82335 * 179.72447 * 8 7 6 32 32 H 0.96996 * 119.99923 * 255.20484 * 10 9 8 33 33 H 0.97004 * 119.99935 * 180.02562 * 17 16 14 34 34 H 1.08008 * 119.67241 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3992 -1.2294 -2.1294 6 6 2.0323 -0.7104 1.2305 7 6 3.3551 -1.1077 1.2959 8 6 3.8102 -1.7605 2.4293 9 6 2.9092 -1.9918 3.4664 10 7 3.3203 -2.6470 4.6298 11 16 4.2415 -1.8466 5.7493 12 8 4.4461 -2.7542 6.8233 13 8 5.3067 -1.2387 5.0317 14 6 3.2587 -0.5317 6.3894 15 1 2.2249 -0.4358 6.0917 16 6 3.8093 0.3747 7.2706 17 7 3.0756 1.3558 7.7487 18 14 5.5974 0.2091 7.7851 19 1 6.4555 0.9762 6.8468 20 1 5.7680 0.7422 9.1606 21 1 5.9900 -1.2228 7.7569 22 6 1.5961 -1.5614 3.3265 23 7 1.2046 -0.9435 2.2300 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 4.0259 -0.9111 0.4724 31 1 4.8372 -2.0859 2.5057 32 1 3.0662 -3.5706 4.7818 33 1 3.4630 1.9937 8.3683 34 1 0.8888 -1.7348 4.1240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:28 Heat of formation + Delta-G solvation = -43.108723 kcal Electronic energy + Delta-G solvation = -21304.272147 eV Core-core repulsion = 17942.170233 eV Total energy + Delta-G solvation = -3362.101914 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69810 -38.78313 -37.75324 -36.69359 -36.57657 -35.23929 -35.08410 -33.20276 -29.90992 -28.56068 -28.24060 -25.40821 -24.31487 -23.06507 -21.22850 -19.63326 -19.06774 -18.82686 -18.66435 -17.44793 -17.16918 -16.62415 -16.05351 -15.49446 -15.45028 -15.38998 -14.96165 -14.85357 -14.46539 -14.37081 -14.04672 -13.70976 -13.62844 -13.45264 -13.16904 -12.98444 -12.84102 -12.77261 -12.62927 -12.55207 -12.30861 -12.10485 -11.96612 -11.69754 -11.34617 -11.08372 -10.81312 -10.32676 -9.84183 -8.95524 -7.52369 -0.33517 0.15831 0.26140 1.06651 1.14426 1.20134 1.58220 1.67365 1.88306 2.36796 2.42821 2.51710 2.80867 3.18890 3.25138 3.62071 3.83910 3.89290 3.97933 4.03253 4.16200 4.26434 4.58690 4.64873 4.84300 4.86087 4.95754 4.99793 5.09162 5.13850 5.30448 5.38109 5.45536 5.58833 6.03611 6.14821 6.42894 6.54171 6.83299 8.21570 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.004744 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.712206 B = 5900.419310 C = 6231.997341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.094 3.906 3 C -0.141 4.141 4 C 0.242 3.758 5 N -0.463 5.463 6 C 0.124 3.876 7 C -0.155 4.155 8 C -0.073 4.073 9 C 0.086 3.914 10 N -1.052 6.052 11 S 2.690 3.310 12 O -1.021 7.021 13 O -1.018 7.018 14 C -1.032 5.032 15 H 0.114 0.886 16 C 0.113 3.887 17 N -0.847 5.847 18 Si 0.832 3.168 19 H -0.238 1.238 20 H -0.224 1.224 21 H -0.242 1.242 22 C 0.109 3.891 23 N -0.460 5.460 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.432 0.568 33 H 0.292 0.708 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 -0.982 -12.868 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 C -0.199 4.199 4 C -0.076 4.076 5 N -0.138 5.138 6 C -0.016 4.016 7 C -0.175 4.175 8 C -0.101 4.101 9 C -0.011 4.011 10 N -0.808 5.808 11 S 2.792 3.208 12 O -1.011 7.011 13 O -1.007 7.007 14 C -1.165 5.165 15 H 0.132 0.868 16 C -0.105 4.105 17 N -0.477 5.477 18 Si 0.651 3.349 19 H -0.162 1.162 20 H -0.146 1.146 21 H -0.165 1.165 22 C -0.051 4.051 23 N -0.169 5.169 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.271 0.729 33 H 0.102 0.898 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.692 -1.457 -13.982 14.534 hybrid contribution 0.827 -0.191 1.259 1.518 sum -2.865 -1.648 -12.722 13.145 Atomic orbital electron populations 1.21770 0.88224 1.03706 1.04735 1.17128 0.98960 0.94347 0.80611 1.22014 1.02381 0.90100 1.05432 1.29002 0.92192 0.92584 0.93863 1.81234 1.09970 1.09871 1.12736 1.20976 0.90137 0.96005 0.94451 1.22015 0.96847 0.99613 0.99072 1.22170 1.00885 0.95490 0.91554 1.18451 0.95014 0.99919 0.87680 1.52659 1.72849 1.24429 1.30906 1.00918 0.73500 0.74301 0.72066 1.93453 1.86333 1.66870 1.54482 1.93376 1.55618 1.78103 1.73620 1.30796 1.13833 1.31099 1.40803 0.86779 1.25069 1.00693 0.92576 0.92118 1.69996 1.38280 1.12645 1.26783 0.87380 0.81609 0.83096 0.82851 1.16168 1.14626 1.16482 1.23356 0.94137 0.92199 0.95398 1.67436 1.37038 1.12226 1.00187 0.89066 0.89548 0.92203 0.91304 0.88410 0.89578 0.82887 0.83462 0.72866 0.89771 0.80622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 7.76 71.98 0.56 -1.34 16 2 C 0.09 1.71 0.80 -54.73 -0.04 1.67 16 3 C -0.14 -2.03 8.36 71.98 0.60 -1.43 16 4 C 0.24 5.12 12.79 89.44 1.14 6.26 16 5 N -0.46 -11.92 18.54 20.01 0.37 -11.55 16 6 C 0.12 3.05 5.54 42.57 0.24 3.28 16 7 C -0.16 -3.99 9.07 22.34 0.20 -3.79 16 8 C -0.07 -2.21 9.45 22.59 0.21 -2.00 16 9 C 0.09 2.82 5.82 38.30 0.22 3.04 16 10 N -1.05 -36.54 5.73 -51.12 -0.29 -36.84 16 11 S 2.69 125.62 4.18 -56.49 -0.24 125.38 16 12 O -1.02 -51.69 16.58 -128.00 -2.12 -53.82 16 13 O -1.02 -50.24 15.50 -128.00 -1.98 -52.23 16 14 C -1.03 -54.87 10.21 67.74 0.69 -54.18 16 15 H 0.11 6.11 8.06 -2.91 -0.02 6.09 16 16 C 0.11 6.22 5.47 84.66 0.46 6.68 16 17 N -0.85 -47.03 13.96 21.45 0.30 -46.73 16 18 Si 0.83 40.12 26.32 68.60 1.81 41.92 16 19 H -0.24 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.22 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.24 -11.96 5.89 99.48 0.59 -11.38 16 22 C 0.11 3.28 11.13 84.85 0.94 4.23 16 23 N -0.46 -12.57 9.01 -183.34 -1.65 -14.22 16 24 H 0.09 1.41 7.85 -2.38 -0.02 1.40 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.01 8.09 -2.39 -0.02 1.00 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.15 3.25 7.56 -2.91 -0.02 3.23 16 31 H 0.15 4.36 8.02 -2.91 -0.02 4.33 16 32 H 0.43 12.00 8.95 -96.75 -0.87 11.13 16 33 H 0.29 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.18 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -68.07 313.79 1.58 -66.49 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.16 Total: 19.16 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 5.23 Total: -37.58 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -1.27 Total: -109.34 kcal Atomic # 8 Polarization: -101.94 SS G_CDS: -4.11 Total: -106.04 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.81 Total: 41.92 kcal Atomic # 16 Polarization: 125.62 SS G_CDS: -0.24 Total: 125.38 kcal Total: -68.07 1.58 -66.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.380 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds