Wall clock time and date at job start Tue Mar 31 2020 07:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99824 * 2 1 4 4 H 1.48498 * 109.47295 * 240.00265 * 3 2 1 5 5 H 1.48504 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47428 * 119.99798 * 3 2 1 7 7 C 1.37868 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00021 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00139 * 359.97438 * 7 2 1 10 10 O 1.42111 * 106.40011 * 66.46193 * 9 7 2 11 11 O 1.42101 * 106.40684 * 293.54439 * 9 7 2 12 12 N 1.65603 * 107.22018 * 180.02562 * 9 7 2 13 13 C 1.46888 * 120.47474 * 90.00273 * 12 9 7 14 14 C 1.53322 * 108.76390 * 124.52939 * 13 12 9 15 15 C 1.52765 * 109.10706 * 52.53884 * 14 13 12 16 16 C 1.53406 * 113.48030 * 73.27262 * 15 14 13 17 17 C 1.53843 * 86.97410 * 139.82939 * 16 15 14 18 18 F 1.39905 * 113.60422 * 89.40920 * 17 16 15 19 19 F 1.39906 * 113.60633 * 220.19805 * 17 16 15 20 20 C 1.53664 * 113.52956 * 171.10712 * 15 14 13 21 21 C 1.52761 * 113.00574 * 302.23536 * 15 14 13 22 22 C 1.46877 * 120.47794 * 270.02305 * 12 9 7 23 23 H 0.97001 * 119.99836 * 359.97438 * 1 2 3 24 24 H 1.08990 * 109.59096 * 4.74857 * 13 12 9 25 25 H 1.08991 * 109.70417 * 244.38009 * 13 12 9 26 26 H 1.08998 * 109.53437 * 292.64905 * 14 13 12 27 27 H 1.09001 * 109.53654 * 172.42695 * 14 13 12 28 28 H 1.08996 * 113.63365 * 25.30769 * 16 15 14 29 29 H 1.08995 * 113.63023 * 254.35195 * 16 15 14 30 30 H 1.09007 * 113.70815 * 105.72129 * 20 15 14 31 31 H 1.09001 * 113.63227 * 334.69633 * 20 15 14 32 32 H 1.08998 * 109.52716 * 177.64299 * 21 15 14 33 33 H 1.08999 * 109.53235 * 297.86764 * 21 15 14 34 34 H 1.09001 * 109.59148 * 355.25257 * 22 12 9 35 35 H 1.09004 * 109.58439 * 115.53854 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 -0.0005 10 8 0.4511 -2.7949 -1.2501 11 8 0.4519 -2.7956 1.2494 12 7 2.2485 -3.9353 -0.0005 13 6 2.7544 -4.4821 1.2654 14 6 2.5283 -5.9985 1.2731 15 6 3.1204 -6.5989 -0.0008 16 6 4.6538 -6.6430 -0.0002 17 6 4.5329 -8.0297 -0.6553 18 9 4.4919 -7.9873 -2.0531 19 9 5.4546 -8.9622 -0.1671 20 6 3.1445 -8.1353 -0.0011 21 6 2.5290 -5.9982 -1.2747 22 6 2.7549 -4.4817 -1.2664 23 1 -0.4850 0.8401 0.0004 24 1 2.2189 -4.0286 2.0994 25 1 3.8198 -4.2711 1.3572 26 1 1.4592 -6.2074 1.3116 27 1 3.0176 -6.4357 2.1435 28 1 5.0899 -6.6680 0.9984 29 1 5.1127 -5.8936 -0.6451 30 1 2.3903 -8.5854 -0.6468 31 1 3.1640 -8.5723 0.9973 32 1 3.0190 -6.4348 -2.1450 33 1 1.4599 -6.2071 -1.3140 34 1 2.2196 -4.0280 -2.1005 35 1 3.8200 -4.2684 -1.3563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192953469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:12 Heat of formation + Delta-G solvation = -174.444836 kcal Electronic energy + Delta-G solvation = -22980.530132 eV Core-core repulsion = 19162.043871 eV Total energy + Delta-G solvation = -3818.486261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.91117 -47.23415 -39.79617 -35.51428 -35.32545 -33.97222 -33.07698 -30.92411 -29.47834 -26.52961 -26.12279 -23.59018 -23.17014 -21.28958 -19.08774 -18.54362 -17.68998 -16.92316 -16.62647 -16.30352 -16.19852 -15.10390 -15.06356 -14.60025 -14.38312 -14.13006 -13.86143 -13.71537 -13.43527 -13.39716 -13.31483 -12.56344 -12.27178 -12.20603 -11.96540 -11.82279 -11.27202 -11.21600 -11.03218 -10.86307 -10.65258 -10.61955 -10.50902 -10.44805 -10.30602 -10.01348 -9.92015 -9.25076 -8.93894 -8.21573 -6.70713 -5.33341 2.24064 3.07422 3.11984 3.17423 3.40175 3.70507 4.04045 4.15963 4.24206 4.24929 4.51520 4.62844 4.99546 5.08570 5.26424 5.30607 5.39152 5.47602 5.51973 5.61035 5.70234 5.76647 5.77949 5.94749 5.99423 6.07026 6.13146 6.19238 6.28165 6.47073 6.47617 6.80917 7.31289 7.57123 7.95755 8.87855 10.22749 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.004468 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.586546 B = 6265.635733 C = 6415.232227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.022 5.022 8 H 0.101 0.899 9 S 2.715 3.285 10 O -1.004 7.004 11 O -1.004 7.004 12 N -1.011 6.011 13 C 0.124 3.876 14 C -0.113 4.113 15 C -0.068 4.068 16 C -0.156 4.156 17 C 0.251 3.749 18 F -0.179 7.179 19 F -0.197 7.197 20 C -0.158 4.158 21 C -0.120 4.120 22 C 0.126 3.874 23 H 0.291 0.709 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 -12.808 0.744 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.155 5.155 8 H 0.119 0.881 9 S 2.816 3.184 10 O -0.994 6.994 11 O -0.995 6.995 12 N -0.846 5.846 13 C -0.002 4.002 14 C -0.152 4.152 15 C -0.068 4.068 16 C -0.194 4.194 17 C 0.215 3.785 18 F -0.160 7.160 19 F -0.178 7.178 20 C -0.196 4.196 21 C -0.159 4.159 22 C 0.000 4.000 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.694 -12.891 0.715 15.029 hybrid contribution 1.203 1.020 -0.155 1.585 sum 8.897 -11.870 0.559 14.845 Atomic orbital electron populations 1.69889 1.06774 1.30838 1.40089 1.24750 0.94463 1.00799 0.88504 0.86208 0.79894 0.79728 0.79770 1.18866 1.20106 1.18880 1.30610 1.06080 1.11936 1.66861 0.88056 1.00505 0.72160 0.72970 0.72773 1.93349 1.72741 1.87582 1.45746 1.93344 1.72784 1.87592 1.45736 1.58129 1.62517 1.54338 1.09587 1.21203 0.99402 0.92621 0.86989 1.21800 1.01816 0.96575 0.95058 1.21387 0.94115 0.93254 0.98061 1.24177 0.98284 0.94042 1.02927 1.22253 0.90125 0.90007 0.76103 1.92985 1.96700 1.96681 1.29615 1.92990 1.69245 1.68577 1.86951 1.24240 0.94279 0.98292 1.02801 1.21861 1.01895 0.96661 0.95507 1.21193 0.99371 0.92485 0.86986 0.89829 0.88646 0.92322 0.90741 0.90829 0.87034 0.88593 0.88879 0.87086 0.90121 0.90556 0.88552 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.70 13.19 55.43 0.73 -23.97 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -1.02 -27.72 9.74 30.60 0.30 -27.43 16 8 H 0.10 2.52 7.81 -52.48 -0.41 2.11 16 9 S 2.71 70.35 5.00 -107.50 -0.54 69.81 16 10 O -1.00 -28.63 16.61 -57.17 -0.95 -29.58 16 11 O -1.00 -28.48 16.60 -57.17 -0.95 -29.43 16 12 N -1.01 -19.42 3.26 -113.44 -0.37 -19.79 16 13 C 0.12 1.95 6.33 -3.66 -0.02 1.93 16 14 C -0.11 -1.40 5.26 -26.69 -0.14 -1.54 16 15 C -0.07 -0.78 0.76 -154.20 -0.12 -0.90 16 16 C -0.16 -1.60 6.64 -26.08 -0.17 -1.78 16 17 C 0.25 2.76 3.25 -25.85 -0.08 2.67 16 18 F -0.18 -2.22 15.49 2.25 0.03 -2.18 16 19 F -0.20 -2.34 17.41 2.25 0.04 -2.30 16 20 C -0.16 -1.53 7.03 -25.95 -0.18 -1.71 16 21 C -0.12 -1.61 5.20 -26.69 -0.14 -1.75 16 22 C 0.13 2.05 6.31 -3.67 -0.02 2.03 16 23 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 24 H 0.10 1.64 6.91 -51.93 -0.36 1.28 16 25 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.10 0.99 7.33 -51.93 -0.38 0.61 16 30 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 31 H 0.11 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.08 0.98 6.14 -51.93 -0.32 0.66 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.72 6.92 -51.93 -0.36 1.36 16 35 H 0.06 0.83 7.43 -51.93 -0.39 0.44 16 LS Contribution 301.98 15.07 4.55 4.55 Total: -1.00 -33.83 301.98 -7.45 -41.27 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.29 Total: 1.17 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -0.68 Total: -24.90 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.36 Total: -43.76 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -1.90 Total: -59.01 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.07 Total: -4.48 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 70.35 SS G_CDS: -0.54 Total: 69.81 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.83 -7.45 -41.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.173 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds