Wall clock time and date at job start Tue Mar 31 2020 07:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99824 * 2 1 4 4 H 1.48498 * 109.47295 * 240.00265 * 3 2 1 5 5 H 1.48504 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47428 * 119.99798 * 3 2 1 7 7 C 1.37868 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00021 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00139 * 359.97438 * 7 2 1 10 10 O 1.42111 * 106.40011 * 66.46193 * 9 7 2 11 11 O 1.42101 * 106.40684 * 293.54439 * 9 7 2 12 12 N 1.65603 * 107.22018 * 180.02562 * 9 7 2 13 13 C 1.46888 * 120.47474 * 90.00273 * 12 9 7 14 14 C 1.53322 * 108.76390 * 124.52939 * 13 12 9 15 15 C 1.52765 * 109.10706 * 52.53884 * 14 13 12 16 16 C 1.53406 * 113.48030 * 73.27262 * 15 14 13 17 17 C 1.53843 * 86.97410 * 139.82939 * 16 15 14 18 18 F 1.39905 * 113.60422 * 89.40920 * 17 16 15 19 19 F 1.39906 * 113.60633 * 220.19805 * 17 16 15 20 20 C 1.53664 * 113.52956 * 171.10712 * 15 14 13 21 21 C 1.52761 * 113.00574 * 302.23536 * 15 14 13 22 22 C 1.46877 * 120.47794 * 270.02305 * 12 9 7 23 23 H 0.97001 * 119.99836 * 359.97438 * 1 2 3 24 24 H 1.08990 * 109.59096 * 4.74857 * 13 12 9 25 25 H 1.08991 * 109.70417 * 244.38009 * 13 12 9 26 26 H 1.08998 * 109.53437 * 292.64905 * 14 13 12 27 27 H 1.09001 * 109.53654 * 172.42695 * 14 13 12 28 28 H 1.08996 * 113.63365 * 25.30769 * 16 15 14 29 29 H 1.08995 * 113.63023 * 254.35195 * 16 15 14 30 30 H 1.09007 * 113.70815 * 105.72129 * 20 15 14 31 31 H 1.09001 * 113.63227 * 334.69633 * 20 15 14 32 32 H 1.08998 * 109.52716 * 177.64299 * 21 15 14 33 33 H 1.08999 * 109.53235 * 297.86764 * 21 15 14 34 34 H 1.09001 * 109.59148 * 355.25257 * 22 12 9 35 35 H 1.09004 * 109.58439 * 115.53854 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 -0.0005 10 8 0.4511 -2.7949 -1.2501 11 8 0.4519 -2.7956 1.2494 12 7 2.2485 -3.9353 -0.0005 13 6 2.7544 -4.4821 1.2654 14 6 2.5283 -5.9985 1.2731 15 6 3.1204 -6.5989 -0.0008 16 6 4.6538 -6.6430 -0.0002 17 6 4.5329 -8.0297 -0.6553 18 9 4.4919 -7.9873 -2.0531 19 9 5.4546 -8.9622 -0.1671 20 6 3.1445 -8.1353 -0.0011 21 6 2.5290 -5.9982 -1.2747 22 6 2.7549 -4.4817 -1.2664 23 1 -0.4850 0.8401 0.0004 24 1 2.2189 -4.0286 2.0994 25 1 3.8198 -4.2711 1.3572 26 1 1.4592 -6.2074 1.3116 27 1 3.0176 -6.4357 2.1435 28 1 5.0899 -6.6680 0.9984 29 1 5.1127 -5.8936 -0.6451 30 1 2.3903 -8.5854 -0.6468 31 1 3.1640 -8.5723 0.9973 32 1 3.0190 -6.4348 -2.1450 33 1 1.4599 -6.2071 -1.3140 34 1 2.2196 -4.0280 -2.1005 35 1 3.8200 -4.2684 -1.3563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192953469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:11 Heat of formation + Delta-G solvation = -198.667192 kcal Electronic energy + Delta-G solvation = -22981.580492 eV Core-core repulsion = 19162.043871 eV Total energy + Delta-G solvation = -3819.536621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.77438 -48.10560 -40.78709 -37.45779 -36.76061 -36.11509 -35.15110 -32.10693 -30.63902 -28.23345 -27.30576 -24.71223 -24.35883 -22.33326 -20.85010 -19.97595 -18.79420 -18.43570 -17.97490 -17.47738 -17.15675 -16.99668 -16.63509 -15.99132 -15.63361 -15.24296 -15.15997 -14.99885 -14.75160 -14.52219 -14.33456 -13.98040 -13.60096 -13.54462 -13.15693 -13.15365 -12.99909 -12.84943 -12.49677 -12.40977 -12.32956 -12.31322 -12.04542 -11.71282 -11.42393 -11.30351 -11.23600 -11.15779 -10.93232 -9.71304 -8.73618 -7.48184 0.32532 1.33855 1.35781 1.48845 2.20659 2.58001 2.59683 2.84489 2.91692 3.31308 3.36456 3.41892 3.82119 3.89981 4.04105 4.18863 4.33348 4.44363 4.48595 4.51272 4.62619 4.64052 4.71998 4.80366 4.87436 4.91941 4.98341 5.01717 5.15649 5.24014 5.29348 5.37428 5.45242 5.90697 6.04531 6.78590 8.20753 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.004468 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.586546 B = 6265.635733 C = 6415.232227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.989 3.011 4 H -0.251 1.251 5 H -0.264 1.264 6 H -0.249 1.249 7 C -1.043 5.043 8 H 0.119 0.881 9 S 2.717 3.283 10 O -1.043 7.043 11 O -1.040 7.040 12 N -1.006 6.006 13 C 0.112 3.888 14 C -0.108 4.108 15 C -0.073 4.073 16 C -0.149 4.149 17 C 0.244 3.756 18 F -0.191 7.191 19 F -0.201 7.201 20 C -0.146 4.146 21 C -0.117 4.117 22 C 0.118 3.882 23 H 0.298 0.702 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.113 0.887 28 H 0.135 0.865 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.295 -13.431 1.431 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.807 3.193 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.173 1.173 7 C -1.176 5.176 8 H 0.137 0.863 9 S 2.820 3.180 10 O -1.033 7.033 11 O -1.030 7.030 12 N -0.845 5.845 13 C -0.013 4.013 14 C -0.147 4.147 15 C -0.073 4.073 16 C -0.187 4.187 17 C 0.208 3.792 18 F -0.172 7.172 19 F -0.182 7.182 20 C -0.184 4.184 21 C -0.156 4.156 22 C -0.007 4.007 23 H 0.108 0.892 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.153 0.847 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.153 0.847 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.192 -13.534 1.402 17.001 hybrid contribution 0.452 1.118 -0.380 1.264 sum 10.644 -12.416 1.022 16.386 Atomic orbital electron populations 1.69990 1.08795 1.32349 1.41568 1.26026 0.95361 1.05407 0.87559 0.85178 0.78796 0.74571 0.80742 1.17472 1.18860 1.17283 1.31017 1.07142 1.12913 1.66555 0.86331 0.99998 0.72860 0.73766 0.71388 1.93286 1.74606 1.88372 1.47068 1.93284 1.74539 1.88354 1.46865 1.57601 1.61744 1.53017 1.12088 1.21555 1.00553 0.94770 0.84403 1.21795 1.01648 0.94034 0.97177 1.21288 0.95171 0.94603 0.96252 1.24224 0.96842 0.93399 1.04187 1.22451 0.90712 0.90434 0.75593 1.92963 1.96769 1.96743 1.30692 1.92982 1.69506 1.68820 1.86930 1.24237 0.93488 0.96532 1.04097 1.21812 1.01574 0.94544 0.97642 1.21438 1.00295 0.94249 0.84752 0.89152 0.90769 0.89325 0.92163 0.86924 0.84662 0.88574 0.88578 0.84699 0.88654 0.91916 0.91020 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.64 13.19 21.44 0.28 -53.36 16 2 C 0.07 3.84 5.46 84.65 0.46 4.30 16 3 Si 0.99 41.04 29.54 68.60 2.03 43.06 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 7 C -1.04 -57.17 9.74 67.73 0.66 -56.51 16 8 H 0.12 5.83 7.81 -2.91 -0.02 5.80 16 9 S 2.72 145.25 5.00 -56.49 -0.28 144.97 16 10 O -1.04 -62.22 16.61 -128.00 -2.13 -64.34 16 11 O -1.04 -61.31 16.60 -128.00 -2.12 -63.44 16 12 N -1.01 -38.56 3.26 -512.83 -1.67 -40.23 16 13 C 0.11 3.36 6.33 86.41 0.55 3.91 16 14 C -0.11 -2.39 5.26 30.62 0.16 -2.23 16 15 C -0.07 -1.47 0.76 -51.98 -0.04 -1.51 16 16 C -0.15 -2.48 6.64 31.01 0.21 -2.27 16 17 C 0.24 4.59 3.25 31.16 0.10 4.69 16 18 F -0.19 -4.30 15.49 44.97 0.70 -3.61 16 19 F -0.20 -4.16 17.41 44.97 0.78 -3.38 16 20 C -0.15 -2.33 7.03 31.10 0.22 -2.11 16 21 C -0.12 -2.99 5.20 30.62 0.16 -2.84 16 22 C 0.12 3.78 6.31 86.41 0.55 4.33 16 23 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16 24 H 0.07 2.55 6.91 -2.39 -0.02 2.53 16 25 H 0.09 2.12 8.06 -2.39 -0.02 2.11 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.11 1.66 8.12 -2.39 -0.02 1.64 16 28 H 0.14 1.65 8.08 -2.39 -0.02 1.63 16 29 H 0.10 1.63 7.33 -2.39 -0.02 1.62 16 30 H 0.10 1.51 8.10 -2.38 -0.02 1.49 16 31 H 0.13 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.10 2.17 6.14 -2.39 -0.01 2.15 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 2.64 6.92 -2.39 -0.02 2.63 16 35 H 0.09 2.26 7.43 -2.39 -0.02 2.25 16 Total: -1.00 -76.00 301.98 1.72 -74.28 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.11 Total: 16.27 kcal Atomic # 6 Polarization: -53.25 SS G_CDS: 3.02 Total: -50.23 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -1.39 Total: -93.58 kcal Atomic # 8 Polarization: -123.53 SS G_CDS: -4.25 Total: -127.78 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 1.48 Total: -6.98 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 16 Polarization: 145.25 SS G_CDS: -0.28 Total: 144.97 kcal Total: -76.00 1.72 -74.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.387 kcal (2) G-P(sol) polarization free energy of solvation -75.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds