Wall clock time and date at job start Tue Mar 31 2020 07:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 126.03672 * 2 1 4 4 C 1.41188 * 134.71446 * 0.31423 * 3 2 1 5 5 C 1.35507 * 119.63876 * 180.18202 * 4 3 2 6 6 C 1.40291 * 121.65919 * 359.46033 * 5 4 3 7 7 N 1.39668 * 119.17358 * 180.27490 * 6 5 4 8 8 S 1.65599 * 120.00296 * 313.69854 * 7 6 5 9 9 O 1.42098 * 106.40019 * 52.19217 * 8 7 6 10 10 O 1.42098 * 106.40096 * 185.10870 * 8 7 6 11 11 C 1.76201 * 107.22048 * 298.65136 * 8 7 6 12 12 H 1.07997 * 119.99489 * 4.90210 * 11 8 7 13 13 C 1.37876 * 119.99842 * 184.90398 * 11 8 7 14 14 N 1.31511 * 120.00276 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99843 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.46995 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47189 * 119.99655 * 15 13 11 18 18 H 1.48500 * 109.46951 * 240.00162 * 15 13 11 19 19 C 1.36293 * 121.64501 * 0.30148 * 6 5 4 20 20 C 1.41078 * 119.54441 * 359.97438 * 19 6 5 21 21 N 1.32090 * 134.60513 * 180.02562 * 20 19 6 22 22 N 1.33983 * 126.04603 * 180.02562 * 2 1 3 23 23 C 1.46500 * 125.01507 * 359.95190 * 22 2 1 24 24 H 1.09003 * 109.47035 * 89.99874 * 1 2 3 25 25 H 1.09002 * 109.46738 * 209.99760 * 1 2 3 26 26 H 1.08998 * 109.47236 * 329.99799 * 1 2 3 27 27 H 1.07995 * 120.17737 * 359.97438 * 4 3 2 28 28 H 1.07995 * 119.16672 * 179.74181 * 5 4 3 29 29 H 0.96996 * 119.99329 * 133.70622 * 7 6 5 30 30 H 0.96998 * 120.00224 * 180.02562 * 14 13 11 31 31 H 1.07999 * 120.22964 * 179.97438 * 19 6 5 32 32 H 1.08999 * 109.47268 * 90.00817 * 23 22 2 33 33 H 1.08999 * 109.47117 * 210.00465 * 23 22 2 34 34 H 1.09001 * 109.47505 * 330.00487 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3204 1.1180 0.0000 4 6 2.0935 2.5115 0.0055 5 6 3.1482 3.3622 -0.0002 6 6 4.4710 2.8950 -0.0002 7 7 5.5191 3.8182 -0.0004 8 16 5.4855 5.1089 -1.0373 9 8 4.2289 5.7443 -0.8465 10 8 6.7278 5.7810 -0.8816 11 6 5.4720 4.4614 -2.6759 12 1 5.4055 3.3952 -2.8346 13 6 5.5464 5.3158 -3.7555 14 7 5.6269 6.6142 -3.5622 15 14 5.5313 4.6294 -5.4927 16 1 5.4342 3.1485 -5.4389 17 1 4.3644 5.1759 -6.2308 18 1 6.7839 5.0178 -6.1893 19 6 4.7589 1.5628 -0.0006 20 6 3.7062 0.6237 -0.0005 21 7 3.6401 -0.6956 -0.0004 22 7 2.2954 -1.0833 -0.0005 23 6 1.8199 -2.4690 -0.0001 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.0848 2.8973 0.0108 28 1 2.9658 4.4267 -0.0001 29 1 6.2667 3.7032 0.6069 30 1 5.6788 7.2153 -4.3216 31 1 5.7858 1.2285 -0.0011 32 1 1.7014 -2.8128 -1.0276 33 1 2.5441 -3.1015 0.5133 34 1 0.8605 -2.5238 0.5143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:36 Heat of formation + Delta-G solvation = 6.252792 kcal Electronic energy + Delta-G solvation = -21317.116367 eV Core-core repulsion = 17957.154929 eV Total energy + Delta-G solvation = -3359.961438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.13387 -37.82820 -35.28687 -34.09380 -34.02162 -33.09388 -33.05181 -31.10649 -29.38052 -26.72597 -26.40391 -26.12599 -22.38701 -21.60960 -19.52882 -18.96943 -17.72179 -17.22052 -16.62515 -16.15563 -15.78199 -15.77392 -14.90695 -14.22663 -13.98554 -13.81916 -13.64726 -13.45875 -13.34933 -13.04356 -12.88627 -12.59366 -12.03839 -11.89228 -11.55637 -11.35686 -11.25227 -11.21490 -10.56870 -10.49590 -10.37722 -10.14459 -10.07834 -9.80197 -9.57290 -9.25036 -8.82841 -7.81277 -7.21934 -6.70451 -5.31811 0.88137 2.02307 2.31285 2.44569 2.68640 3.07547 3.15680 3.25192 4.06409 4.20012 4.28475 4.44613 4.58454 4.67319 4.80607 4.88563 4.98904 5.15597 5.28405 5.32636 5.57440 5.65132 5.67927 5.76503 5.89140 5.94583 6.38773 6.47849 6.53179 6.79079 6.90176 7.00937 7.13928 7.27733 7.35048 7.79492 7.92828 8.00789 8.89700 10.23549 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019705 B = 0.004924 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.628705 B = 5684.625676 C = 6213.669002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.097 3.903 3 C -0.211 4.211 4 C -0.033 4.033 5 C -0.169 4.169 6 C 0.230 3.770 7 N -1.076 6.076 8 S 2.706 3.294 9 O -0.998 6.998 10 O -0.995 6.995 11 C -1.011 5.011 12 H 0.105 0.895 13 C 0.135 3.865 14 N -0.845 5.845 15 Si 0.920 3.080 16 H -0.261 1.261 17 H -0.270 1.270 18 H -0.271 1.271 19 C -0.153 4.153 20 C 0.127 3.873 21 N -0.322 5.322 22 N -0.333 5.333 23 C 0.093 3.907 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.126 0.874 28 H 0.162 0.838 29 H 0.413 0.587 30 H 0.291 0.709 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.533 -14.737 6.316 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C -0.220 4.220 4 C -0.054 4.054 5 C -0.190 4.190 6 C 0.128 3.872 7 N -0.820 5.820 8 S 2.808 3.192 9 O -0.987 6.987 10 O -0.985 6.985 11 C -1.146 5.146 12 H 0.124 0.876 13 C -0.083 4.083 14 N -0.475 5.475 15 Si 0.744 3.256 16 H -0.185 1.185 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.180 4.180 20 C -0.026 4.026 21 N -0.149 5.149 22 N -0.108 5.108 23 C -0.048 4.048 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.143 0.857 28 H 0.180 0.820 29 H 0.247 0.753 30 H 0.101 0.899 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.967 -14.834 6.440 18.997 hybrid contribution 0.040 -0.319 -1.154 1.198 sum -9.928 -15.153 5.287 18.871 Atomic orbital electron populations 1.20489 0.86810 1.03935 1.03610 1.21081 0.94079 0.86949 1.01747 1.19384 0.92281 0.93895 1.16486 1.20043 0.98700 0.89396 0.97272 1.21475 0.90670 1.03021 1.03817 1.16862 0.87438 0.88285 0.94637 1.54107 1.28888 1.44388 1.54625 1.00850 0.73110 0.70737 0.74519 1.93306 1.45001 1.73163 1.87280 1.93392 1.45802 1.71609 1.87692 1.30446 1.66409 1.04222 1.13478 0.87640 1.24719 0.88406 0.93716 1.01500 1.69898 1.39969 1.02769 1.34833 0.86126 0.78563 0.80253 0.80653 1.18521 1.19531 1.19565 1.19605 0.97079 0.89835 1.11452 1.20574 0.93759 0.90644 0.97614 1.77697 0.92412 1.12043 1.32794 1.48311 1.04594 1.06102 1.51837 1.21947 1.00749 0.78390 1.03763 0.89793 0.91101 0.89234 0.85652 0.82021 0.75307 0.89890 0.85276 0.90237 0.88922 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.09 36.01 0.36 -0.32 16 2 C 0.10 1.25 6.98 -81.65 -0.57 0.69 16 3 C -0.21 -3.46 6.26 -105.16 -0.66 -4.12 16 4 C -0.03 -0.55 10.08 -39.44 -0.40 -0.95 16 5 C -0.17 -3.30 9.07 -39.79 -0.36 -3.66 16 6 C 0.23 4.59 6.06 -84.22 -0.51 4.08 16 7 N -1.08 -22.25 5.72 32.19 0.18 -22.06 16 8 S 2.71 71.31 4.94 -107.50 -0.53 70.78 16 9 O -1.00 -27.78 15.05 -57.17 -0.86 -28.64 16 10 O -0.99 -28.86 17.92 -57.17 -1.02 -29.89 16 11 C -1.01 -28.19 9.60 30.60 0.29 -27.89 16 12 H 0.11 2.80 7.81 -52.49 -0.41 2.39 16 13 C 0.13 3.77 5.46 -17.82 -0.10 3.67 16 14 N -0.84 -24.67 13.10 55.43 0.73 -23.94 16 15 Si 0.92 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 19 C -0.15 -2.87 9.96 -39.21 -0.39 -3.26 16 20 C 0.13 2.34 7.49 -83.07 -0.62 1.72 16 21 N -0.32 -5.55 12.54 33.24 0.42 -5.13 16 22 N -0.33 -4.39 3.95 -63.35 -0.25 -4.64 16 23 C 0.09 0.69 11.17 59.85 0.67 1.35 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.36 6.95 -51.93 -0.36 0.00 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.16 3.40 5.57 -52.49 -0.29 3.11 16 29 H 0.41 7.16 8.95 -34.47 -0.31 6.85 16 30 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.38 6.90 -51.93 -0.36 0.02 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -37.44 309.47 -7.38 -44.81 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.40 Total: 6.81 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -2.28 Total: -28.69 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 1.08 Total: -55.77 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -1.89 Total: -58.52 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 71.31 SS G_CDS: -0.53 Total: 70.78 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -37.44 -7.38 -44.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.067 kcal (2) G-P(sol) polarization free energy of solvation -37.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds