Wall clock time and date at job start Tue Mar 31 2020 07:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30257 * 126.08922 * 2 1 4 4 N 1.39859 * 110.08039 * 179.97438 * 3 2 1 5 5 C 1.46508 * 125.46807 * 180.02562 * 4 3 2 6 6 C 1.37251 * 109.05815 * 0.02562 * 4 3 2 7 7 C 1.39288 * 133.67122 * 180.28794 * 6 4 3 8 8 C 1.36489 * 120.09292 * 180.20013 * 7 6 4 9 9 C 1.39554 * 120.75254 * 359.47594 * 8 7 6 10 10 N 1.39948 * 119.83461 * 180.23866 * 9 8 7 11 11 S 1.65595 * 120.00070 * 313.81338 * 10 9 8 12 12 O 1.42095 * 106.40354 * 52.07585 * 11 10 9 13 13 O 1.42105 * 106.39935 * 184.98878 * 11 10 9 14 14 C 1.76199 * 107.21896 * 298.52855 * 11 10 9 15 15 H 1.08001 * 119.99865 * 5.21346 * 14 11 10 16 16 C 1.37877 * 119.99860 * 185.21388 * 14 11 10 17 17 N 1.31509 * 119.99897 * 180.02562 * 16 14 11 18 18 Si 1.86806 * 120.00075 * 359.97438 * 16 14 11 19 19 H 1.48506 * 109.46744 * 90.00286 * 18 16 14 20 20 H 1.48503 * 109.47058 * 210.00125 * 18 16 14 21 21 H 1.48493 * 109.47189 * 330.00236 * 18 16 14 22 22 C 1.38047 * 120.32454 * 0.26291 * 9 8 7 23 23 C 1.39981 * 119.46494 * 0.02562 * 22 9 8 24 24 H 1.09003 * 109.46522 * 89.98181 * 1 2 3 25 25 H 1.09004 * 109.47063 * 209.97491 * 1 2 3 26 26 H 1.08993 * 109.47418 * 329.97887 * 1 2 3 27 27 H 1.08998 * 109.46742 * 269.99835 * 5 4 3 28 28 H 1.09000 * 109.47388 * 29.99881 * 5 4 3 29 29 H 1.09000 * 109.47049 * 150.00686 * 5 4 3 30 30 H 1.08004 * 119.95022 * 359.97438 * 7 6 4 31 31 H 1.08003 * 119.61940 * 179.71328 * 8 7 6 32 32 H 0.97002 * 119.99766 * 133.81318 * 10 9 8 33 33 H 0.96997 * 120.00269 * 179.97438 * 17 16 14 34 34 H 1.08000 * 120.26240 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0526 0.0000 4 7 3.6187 0.6669 0.0006 5 6 4.7649 1.5794 0.0013 6 6 3.6917 -0.7037 0.0004 7 6 4.7489 -1.6105 0.0058 8 6 4.4995 -2.9524 -0.0003 9 6 3.1900 -3.4349 -0.0010 10 7 2.9564 -4.8147 -0.0022 11 16 3.7973 -5.7960 -1.0377 12 8 5.1731 -5.4967 -0.8457 13 8 3.2568 -7.1009 -0.8817 14 6 3.4010 -5.2859 -2.6770 15 1 2.7846 -4.4136 -2.8370 16 6 3.8778 -6.0004 -3.7555 17 7 3.5825 -5.6194 -4.9791 18 14 4.9446 -7.5087 -3.4788 19 1 4.0820 -8.7134 -3.3785 20 1 5.8844 -7.6661 -4.6178 21 1 5.7154 -7.3456 -2.2201 22 6 2.1241 -2.5577 -0.0010 23 6 2.3668 -1.1791 -0.0008 24 1 -0.3632 0.0003 -1.0277 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3634 0.8897 0.5141 27 1 5.0496 1.8058 -1.0262 28 1 4.4946 2.5019 0.5151 29 1 5.6032 1.1093 0.5154 30 1 5.7674 -1.2513 0.0112 31 1 5.3251 -3.6488 -0.0007 32 1 2.3019 -5.1963 0.6035 33 1 3.9182 -6.1218 -5.7378 34 1 1.1111 -2.9322 -0.0011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980132.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:40 Heat of formation + Delta-G solvation = 10.644629 kcal Electronic energy + Delta-G solvation = -21428.857832 eV Core-core repulsion = 18069.086839 eV Total energy + Delta-G solvation = -3359.770993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.07117 -37.74645 -35.73066 -34.58139 -34.12334 -33.57309 -33.05092 -30.01561 -29.51472 -28.27530 -26.45023 -24.98564 -22.86235 -21.59140 -19.68044 -19.18606 -17.86146 -17.15584 -16.91181 -16.63366 -15.61783 -15.49116 -15.05005 -14.33426 -14.05089 -13.88938 -13.56320 -13.43100 -13.21192 -12.98732 -12.86895 -12.69900 -12.59328 -12.23043 -11.73092 -11.47252 -11.38278 -11.05471 -10.88972 -10.67537 -10.61709 -10.48891 -10.08422 -9.85601 -9.45595 -9.25891 -8.98814 -8.31743 -7.29673 -6.82946 -5.37850 1.16100 1.61464 2.01438 2.49880 2.61398 3.04965 3.14148 3.21548 3.90927 3.99849 4.13739 4.46412 4.56157 4.63497 4.83042 5.11411 5.17373 5.18350 5.34024 5.41541 5.46931 5.57307 5.63091 5.66869 5.75626 5.92405 6.13946 6.22759 6.26699 6.61600 6.65748 6.84203 7.02790 7.21943 7.44667 7.66161 7.79136 8.20536 8.66572 10.29340 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.004850 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.056311 B = 5771.290390 C = 5849.772058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.095 3.905 3 N -0.261 5.261 4 N -0.415 5.415 5 C 0.114 3.886 6 C 0.115 3.885 7 C -0.124 4.124 8 C -0.088 4.088 9 C 0.138 3.862 10 N -1.062 6.062 11 S 2.670 3.330 12 O -1.002 7.002 13 O -1.004 7.004 14 C -1.009 5.009 15 H 0.124 0.876 16 C 0.153 3.847 17 N -0.819 5.819 18 Si 0.814 3.186 19 H -0.245 1.245 20 H -0.257 1.257 21 H -0.230 1.230 22 C -0.065 4.065 23 C -0.160 4.160 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.166 0.834 32 H 0.414 0.586 33 H 0.281 0.719 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 10.709 9.930 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 N -0.075 5.075 4 N -0.204 5.204 5 C -0.027 4.027 6 C 0.001 3.999 7 C -0.146 4.146 8 C -0.110 4.110 9 C 0.040 3.960 10 N -0.808 5.808 11 S 2.773 3.227 12 O -0.991 6.991 13 O -0.994 6.994 14 C -1.144 5.144 15 H 0.142 0.858 16 C -0.067 4.067 17 N -0.448 5.448 18 Si 0.634 3.366 19 H -0.169 1.169 20 H -0.181 1.181 21 H -0.153 1.153 22 C -0.090 4.090 23 C -0.168 4.168 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.183 0.817 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.693 11.407 9.909 15.126 hybrid contribution -0.073 -1.157 -0.471 1.251 sum -0.767 10.250 9.438 13.954 Atomic orbital electron populations 1.20214 0.85890 1.03479 1.03465 1.23439 0.96453 0.88722 0.99605 1.76421 0.87351 1.23658 1.20065 1.47963 1.03703 1.02682 1.66069 1.21668 0.84970 0.93273 1.02803 1.18827 0.95715 0.84234 1.01109 1.19613 0.96763 0.91287 1.06965 1.21554 0.97170 0.95867 0.96452 1.17029 0.92768 0.82963 1.03195 1.53378 1.58455 1.14397 1.54578 1.01673 0.73188 0.71916 0.75931 1.93399 1.33896 1.84368 1.87475 1.93420 1.79808 1.38401 1.87816 1.30290 1.47179 1.25823 1.11077 0.85814 1.24427 0.92253 0.95711 0.94315 1.69985 1.38645 1.37606 0.98565 0.87687 0.82219 0.84342 0.82340 1.16892 1.18106 1.15298 1.20471 0.98780 0.89934 0.99794 1.19488 0.91677 0.93538 1.12122 0.89979 0.90033 0.90659 0.91502 0.89895 0.89892 0.85433 0.81720 0.75165 0.90822 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.48 36.01 0.38 -0.35 16 2 C 0.10 1.39 7.43 -80.18 -0.60 0.79 16 3 N -0.26 -4.02 12.40 34.84 0.43 -3.58 16 4 N -0.41 -6.13 4.06 -65.42 -0.27 -6.40 16 5 C 0.11 1.14 11.40 59.85 0.68 1.82 16 6 C 0.11 1.88 6.87 -84.10 -0.58 1.30 16 7 C -0.12 -1.98 9.94 -39.82 -0.40 -2.38 16 8 C -0.09 -1.60 9.15 -39.72 -0.36 -1.97 16 9 C 0.14 2.54 6.13 -83.73 -0.51 2.02 16 10 N -1.06 -20.07 5.77 32.43 0.19 -19.88 16 11 S 2.67 64.70 4.11 -107.50 -0.44 64.26 16 12 O -1.00 -25.29 13.70 -57.17 -0.78 -26.08 16 13 O -1.00 -25.94 16.37 -57.17 -0.94 -26.88 16 14 C -1.01 -27.81 10.15 30.60 0.31 -27.50 16 15 H 0.12 3.51 8.06 -52.49 -0.42 3.09 16 16 C 0.15 4.34 5.47 -17.82 -0.10 4.24 16 17 N -0.82 -23.47 13.96 55.43 0.77 -22.69 16 18 Si 0.81 20.51 26.32 -169.99 -4.47 16.04 16 19 H -0.25 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.23 -5.83 5.89 56.52 0.33 -5.50 16 22 C -0.07 -1.07 10.03 -39.00 -0.39 -1.46 16 23 C -0.16 -2.62 6.33 -105.21 -0.67 -3.29 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 31 H 0.17 3.17 5.67 -52.48 -0.30 2.87 16 32 H 0.41 6.36 8.96 -34.47 -0.31 6.05 16 33 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -34.18 306.10 -6.74 -40.92 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -3.61 Total: 6.44 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -2.23 Total: -26.76 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 1.13 Total: -52.56 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -1.72 Total: -52.95 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.47 Total: 16.04 kcal Atomic # 16 Polarization: 64.70 SS G_CDS: -0.44 Total: 64.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.18 -6.74 -40.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980132.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.564 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds