Wall clock time and date at job start Tue Mar 31 2020 07:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30257 * 126.08922 * 2 1 4 4 N 1.39859 * 110.08039 * 179.97438 * 3 2 1 5 5 C 1.46508 * 125.46807 * 180.02562 * 4 3 2 6 6 C 1.37251 * 109.05815 * 0.02562 * 4 3 2 7 7 C 1.39288 * 133.67122 * 180.28794 * 6 4 3 8 8 C 1.36489 * 120.09292 * 180.20013 * 7 6 4 9 9 C 1.39554 * 120.75254 * 359.47594 * 8 7 6 10 10 N 1.39948 * 119.83461 * 180.23866 * 9 8 7 11 11 S 1.65595 * 120.00070 * 313.81338 * 10 9 8 12 12 O 1.42095 * 106.40354 * 52.07585 * 11 10 9 13 13 O 1.42105 * 106.39935 * 184.98878 * 11 10 9 14 14 C 1.76199 * 107.21896 * 298.52855 * 11 10 9 15 15 H 1.08001 * 119.99865 * 5.21346 * 14 11 10 16 16 C 1.37877 * 119.99860 * 185.21388 * 14 11 10 17 17 N 1.31509 * 119.99897 * 180.02562 * 16 14 11 18 18 Si 1.86806 * 120.00075 * 359.97438 * 16 14 11 19 19 H 1.48506 * 109.46744 * 90.00286 * 18 16 14 20 20 H 1.48503 * 109.47058 * 210.00125 * 18 16 14 21 21 H 1.48493 * 109.47189 * 330.00236 * 18 16 14 22 22 C 1.38047 * 120.32454 * 0.26291 * 9 8 7 23 23 C 1.39981 * 119.46494 * 0.02562 * 22 9 8 24 24 H 1.09003 * 109.46522 * 89.98181 * 1 2 3 25 25 H 1.09004 * 109.47063 * 209.97491 * 1 2 3 26 26 H 1.08993 * 109.47418 * 329.97887 * 1 2 3 27 27 H 1.08998 * 109.46742 * 269.99835 * 5 4 3 28 28 H 1.09000 * 109.47388 * 29.99881 * 5 4 3 29 29 H 1.09000 * 109.47049 * 150.00686 * 5 4 3 30 30 H 1.08004 * 119.95022 * 359.97438 * 7 6 4 31 31 H 1.08003 * 119.61940 * 179.71328 * 8 7 6 32 32 H 0.97002 * 119.99766 * 133.81318 * 10 9 8 33 33 H 0.96997 * 120.00269 * 179.97438 * 17 16 14 34 34 H 1.08000 * 120.26240 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0526 0.0000 4 7 3.6187 0.6669 0.0006 5 6 4.7649 1.5794 0.0013 6 6 3.6917 -0.7037 0.0004 7 6 4.7489 -1.6105 0.0058 8 6 4.4995 -2.9524 -0.0003 9 6 3.1900 -3.4349 -0.0010 10 7 2.9564 -4.8147 -0.0022 11 16 3.7973 -5.7960 -1.0377 12 8 5.1731 -5.4967 -0.8457 13 8 3.2568 -7.1009 -0.8817 14 6 3.4010 -5.2859 -2.6770 15 1 2.7846 -4.4136 -2.8370 16 6 3.8778 -6.0004 -3.7555 17 7 3.5825 -5.6194 -4.9791 18 14 4.9446 -7.5087 -3.4788 19 1 4.0820 -8.7134 -3.3785 20 1 5.8844 -7.6661 -4.6178 21 1 5.7154 -7.3456 -2.2201 22 6 2.1241 -2.5577 -0.0010 23 6 2.3668 -1.1791 -0.0008 24 1 -0.3632 0.0003 -1.0277 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3634 0.8897 0.5141 27 1 5.0496 1.8058 -1.0262 28 1 4.4946 2.5019 0.5151 29 1 5.6032 1.1093 0.5154 30 1 5.7674 -1.2513 0.0112 31 1 5.3251 -3.6488 -0.0007 32 1 2.3019 -5.1963 0.6035 33 1 3.9182 -6.1218 -5.7378 34 1 1.1111 -2.9322 -0.0011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980132.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:40 Heat of formation + Delta-G solvation = -15.085113 kcal Electronic energy + Delta-G solvation = -21429.973557 eV Core-core repulsion = 18069.086839 eV Total energy + Delta-G solvation = -3360.886719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.24727 -39.08402 -37.68997 -36.57192 -35.31381 -35.17545 -34.82016 -31.25714 -30.37480 -29.55362 -28.56477 -25.99881 -24.13307 -22.88462 -21.21451 -20.68482 -19.61819 -18.78845 -18.65720 -17.77337 -17.33607 -16.78770 -16.51984 -15.92280 -15.68469 -15.32178 -15.02158 -14.94085 -14.44139 -14.37634 -14.16847 -13.73603 -13.61940 -13.46175 -13.33495 -13.05671 -12.97870 -12.69605 -12.59448 -12.57657 -12.13539 -11.83314 -11.79766 -11.37689 -11.34493 -11.09074 -10.56674 -9.60164 -8.95703 -8.54837 -7.52535 -0.10815 -0.03670 0.51498 1.06618 1.15520 1.20693 1.45811 1.47899 1.88825 2.38400 2.44918 2.71731 3.18831 3.46147 3.54571 3.71937 3.96822 4.11724 4.30198 4.36418 4.41225 4.45245 4.63256 4.67246 4.76079 4.83674 4.93077 5.05907 5.08216 5.31267 5.38259 5.46086 5.55913 5.77854 6.02700 6.08505 6.29209 6.53291 6.64542 8.22283 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.004850 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.056311 B = 5771.290390 C = 5849.772058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.095 3.905 3 N -0.277 5.277 4 N -0.417 5.417 5 C 0.102 3.898 6 C 0.104 3.896 7 C -0.119 4.119 8 C -0.110 4.110 9 C 0.107 3.893 10 N -1.046 6.046 11 S 2.696 3.304 12 O -1.014 7.014 13 O -1.021 7.021 14 C -1.031 5.031 15 H 0.103 0.897 16 C 0.109 3.891 17 N -0.853 5.853 18 Si 0.836 3.164 19 H -0.238 1.238 20 H -0.223 1.223 21 H -0.234 1.234 22 C -0.056 4.056 23 C -0.181 4.181 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.430 0.570 33 H 0.291 0.709 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 11.546 10.751 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 N -0.092 5.092 4 N -0.206 5.206 5 C -0.038 4.038 6 C -0.011 4.011 7 C -0.141 4.141 8 C -0.133 4.133 9 C 0.010 3.990 10 N -0.798 5.798 11 S 2.797 3.203 12 O -1.003 7.003 13 O -1.011 7.011 14 C -1.164 5.164 15 H 0.121 0.879 16 C -0.108 4.108 17 N -0.483 5.483 18 Si 0.654 3.346 19 H -0.162 1.162 20 H -0.145 1.145 21 H -0.157 1.157 22 C -0.080 4.080 23 C -0.190 4.190 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.173 0.827 31 H 0.168 0.832 32 H 0.268 0.732 33 H 0.102 0.898 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.830 12.264 10.703 16.299 hybrid contribution -0.085 -1.206 -0.669 1.382 sum -0.915 11.058 10.035 14.960 Atomic orbital electron populations 1.20416 0.83029 1.05190 1.04476 1.24075 0.98205 0.87579 0.98336 1.76415 0.87852 1.24164 1.20728 1.48383 1.04483 1.02580 1.65163 1.22053 0.84272 0.93477 1.03951 1.19057 0.95940 0.85306 1.00788 1.19811 0.98205 0.90420 1.05706 1.21548 0.96867 0.96745 0.98173 1.17207 0.93579 0.82482 1.05727 1.52750 1.58678 1.14620 1.53739 1.00763 0.72998 0.71657 0.74876 1.93385 1.34895 1.84663 1.87390 1.93388 1.80192 1.39605 1.87904 1.30806 1.46632 1.25248 1.13705 0.87919 1.25176 0.93312 0.97939 0.94409 1.70015 1.39903 1.39001 0.99355 0.87321 0.81896 0.81975 0.83422 1.16161 1.14532 1.15719 1.20676 0.99420 0.89844 0.98083 1.19858 0.92536 0.94066 1.12496 0.89145 0.88314 0.89018 0.90685 0.88250 0.87848 0.82691 0.83156 0.73172 0.89801 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.48 71.24 0.75 -0.55 16 2 C 0.10 2.60 7.43 44.79 0.33 2.94 16 3 N -0.28 -8.05 12.40 -43.69 -0.54 -8.59 16 4 N -0.42 -11.59 4.06 -360.90 -1.46 -13.06 16 5 C 0.10 1.81 11.40 127.77 1.46 3.27 16 6 C 0.10 3.27 6.87 39.16 0.27 3.54 16 7 C -0.12 -3.70 9.94 22.11 0.22 -3.48 16 8 C -0.11 -4.03 9.15 22.18 0.20 -3.82 16 9 C 0.11 3.89 6.13 38.12 0.23 4.13 16 10 N -1.05 -39.12 5.77 -51.33 -0.30 -39.42 16 11 S 2.70 130.44 4.11 -56.49 -0.23 130.20 16 12 O -1.01 -51.20 13.70 -128.00 -1.75 -52.96 16 13 O -1.02 -52.18 16.37 -128.00 -2.10 -54.28 16 14 C -1.03 -57.68 10.15 67.73 0.69 -57.00 16 15 H 0.10 6.01 8.06 -2.91 -0.02 5.98 16 16 C 0.11 6.19 5.47 84.66 0.46 6.65 16 17 N -0.85 -49.27 13.96 21.45 0.30 -48.97 16 18 Si 0.84 40.96 26.32 68.60 1.81 42.76 16 19 H -0.24 -11.33 7.11 99.48 0.71 -10.63 16 20 H -0.22 -9.63 7.11 99.48 0.71 -8.92 16 21 H -0.23 -11.59 5.89 99.48 0.59 -11.00 16 22 C -0.06 -1.77 10.03 22.65 0.23 -1.54 16 23 C -0.18 -5.70 6.33 -20.25 -0.13 -5.83 16 24 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 31 H 0.15 5.87 5.67 -2.91 -0.02 5.85 16 32 H 0.43 12.81 8.96 -96.74 -0.87 11.95 16 33 H 0.29 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -73.17 306.10 0.59 -72.58 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.16 Total: 23.42 kcal Atomic # 6 Polarization: -56.40 SS G_CDS: 4.71 Total: -51.69 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -2.00 Total: -110.03 kcal Atomic # 8 Polarization: -103.39 SS G_CDS: -3.85 Total: -107.24 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.81 Total: 42.76 kcal Atomic # 16 Polarization: 130.44 SS G_CDS: -0.23 Total: 130.20 kcal Total: -73.17 0.59 -72.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980132.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.492 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds