Wall clock time and date at job start Tue Mar 31 2020 07:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30233 * 126.09471 * 2 1 4 4 N 1.39869 * 110.09196 * 179.97438 * 3 2 1 5 5 C 1.46495 * 125.46201 * 180.02562 * 4 3 2 6 6 C 1.37070 * 109.06699 * 359.97438 * 4 3 2 7 7 C 1.39201 * 133.73553 * 180.27492 * 6 4 3 8 8 C 1.38260 * 119.67199 * 180.17387 * 7 6 4 9 9 N 1.39666 * 119.74495 * 179.77322 * 8 7 6 10 10 S 1.65608 * 120.00045 * 224.72514 * 9 8 7 11 11 O 1.42093 * 106.40109 * 178.26723 * 10 9 8 12 12 O 1.42107 * 106.40103 * 311.18707 * 10 9 8 13 13 C 1.76202 * 107.21687 * 64.72447 * 10 9 8 14 14 H 1.08001 * 119.99832 * 359.97438 * 13 10 9 15 15 C 1.37874 * 119.99924 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00167 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 120.00039 * 0.02562 * 15 13 10 18 18 H 1.48508 * 109.47136 * 89.99881 * 17 15 13 19 19 H 1.48501 * 109.47292 * 209.99949 * 17 15 13 20 20 H 1.48502 * 109.47308 * 330.00222 * 17 15 13 21 21 C 1.39632 * 120.50584 * 359.49920 * 8 7 6 22 22 C 1.36290 * 120.55950 * 0.27220 * 21 8 7 23 23 C 1.39995 * 119.88500 * 359.97438 * 22 21 8 24 24 H 1.08999 * 109.47368 * 270.04144 * 1 2 3 25 25 H 1.09000 * 109.47312 * 30.05139 * 1 2 3 26 26 H 1.09000 * 109.46848 * 150.04660 * 1 2 3 27 27 H 1.09010 * 109.47051 * 89.97988 * 5 4 3 28 28 H 1.08999 * 109.47138 * 209.97528 * 5 4 3 29 29 H 1.08995 * 109.47720 * 329.97827 * 5 4 3 30 30 H 1.07991 * 120.16585 * 359.92690 * 7 6 4 31 31 H 0.97000 * 120.00611 * 44.45015 * 9 8 7 32 32 H 0.96996 * 120.00618 * 179.97438 * 16 15 13 33 33 H 1.08000 * 119.71990 * 180.25522 * 21 8 7 34 34 H 1.08000 * 120.05504 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0523 0.0000 4 7 3.6187 0.6667 0.0006 5 6 4.7646 1.5794 0.0013 6 6 3.6920 -0.7020 0.0016 7 6 4.7478 -1.6092 0.0073 8 6 4.4840 -2.9664 0.0029 9 7 5.5422 -3.8779 0.0038 10 16 5.5076 -5.1878 -1.0090 11 8 6.7266 -5.8877 -0.8014 12 8 4.2296 -5.7874 -0.8461 13 6 5.5618 -4.5726 -2.6593 14 1 5.6073 -3.5084 -2.8376 15 6 5.5450 -5.4497 -3.7228 16 7 5.5859 -4.9906 -4.9545 17 14 5.4641 -7.2903 -3.4144 18 1 4.0439 -7.7208 -3.3577 19 1 6.1552 -8.0077 -4.5157 20 1 6.1287 -7.6057 -2.1244 21 6 3.1678 -3.4327 0.0033 22 6 2.1227 -2.5578 0.0025 23 6 2.3670 -1.1794 0.0017 24 1 -0.3634 0.0007 1.0276 25 1 -0.3634 0.8895 -0.5146 26 1 -0.3633 -0.8904 -0.5131 27 1 5.0481 1.8059 1.0292 28 1 5.6037 1.1095 -0.5118 29 1 4.4949 2.5019 -0.5128 30 1 5.7678 -1.2547 0.0110 31 1 6.2992 -3.7418 0.5948 32 1 5.5745 -5.6077 -5.7028 33 1 2.9763 -4.4956 0.0040 34 1 1.1080 -2.9274 0.0032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:43 Heat of formation + Delta-G solvation = 11.404533 kcal Electronic energy + Delta-G solvation = -21440.451182 eV Core-core repulsion = 18080.713140 eV Total energy + Delta-G solvation = -3359.738041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.05382 -37.78451 -35.77502 -34.63086 -34.20343 -33.55682 -33.07510 -30.09264 -29.42125 -28.13898 -26.47952 -25.25448 -22.55495 -21.72613 -19.74655 -19.12822 -17.75719 -17.22133 -16.97863 -16.67751 -15.67931 -15.47222 -15.07210 -14.25312 -14.06464 -13.97339 -13.56830 -13.49552 -13.32423 -12.96650 -12.84699 -12.61913 -12.54182 -12.22273 -11.80685 -11.51542 -11.36216 -11.07849 -10.87946 -10.70233 -10.61353 -10.34573 -10.01178 -9.91524 -9.65111 -9.26658 -9.08136 -7.84425 -7.60331 -6.85230 -5.41133 1.13090 1.75061 1.90889 2.52129 2.61896 3.02952 3.13400 3.20947 3.89247 4.00689 4.08317 4.48853 4.54003 4.68671 4.85304 5.14328 5.15536 5.19318 5.35136 5.42992 5.54096 5.58249 5.60417 5.68933 5.74161 5.87028 6.05837 6.20880 6.30994 6.63732 6.72676 6.90994 7.09947 7.20068 7.42176 7.58314 7.81658 8.16421 8.63813 10.27026 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.004884 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.464046 B = 5731.274329 C = 5841.000394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.100 3.900 3 N -0.266 5.266 4 N -0.415 5.415 5 C 0.114 3.886 6 C 0.148 3.852 7 C -0.176 4.176 8 C 0.231 3.769 9 N -1.062 6.062 10 S 2.668 3.332 11 O -0.999 6.999 12 O -0.998 6.998 13 C -1.010 5.010 14 H 0.123 0.877 15 C 0.154 3.846 16 N -0.819 5.819 17 Si 0.802 3.198 18 H -0.244 1.244 19 H -0.254 1.254 20 H -0.221 1.221 21 C -0.180 4.180 22 C -0.021 4.021 23 C -0.195 4.195 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.416 0.584 32 H 0.282 0.718 33 H 0.167 0.833 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 9.146 9.655 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 N -0.080 5.080 4 N -0.204 5.204 5 C -0.028 4.028 6 C 0.033 3.967 7 C -0.202 4.202 8 C 0.131 3.869 9 N -0.806 5.806 10 S 2.771 3.229 11 O -0.989 6.989 12 O -0.988 6.988 13 C -1.145 5.145 14 H 0.141 0.859 15 C -0.066 4.066 16 N -0.447 5.447 17 Si 0.622 3.378 18 H -0.167 1.167 19 H -0.178 1.178 20 H -0.143 1.143 21 C -0.202 4.202 22 C -0.042 4.042 23 C -0.204 4.204 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.145 0.855 31 H 0.251 0.749 32 H 0.092 0.908 33 H 0.184 0.816 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.354 9.548 9.652 14.594 hybrid contribution 0.727 -0.817 -0.456 1.185 sum -4.626 8.731 9.196 13.498 Atomic orbital electron populations 1.20208 0.85958 1.03728 1.03132 1.23452 0.96398 0.88919 0.98984 1.76431 0.87217 1.23642 1.20708 1.47927 1.03800 1.02579 1.66084 1.21674 0.85130 0.93456 1.02522 1.18430 0.95200 0.84173 0.98859 1.19792 0.97185 0.90646 1.12618 1.17097 0.87262 0.87962 0.94605 1.53564 1.27840 1.43430 1.55814 1.01769 0.73590 0.71467 0.76041 1.93499 1.47060 1.70726 1.87595 1.93357 1.42927 1.74930 1.87586 1.30266 1.66974 1.05988 1.11236 0.85909 1.24406 0.88663 0.99264 0.94264 1.69978 1.39015 1.36995 0.98734 0.87861 0.81977 0.84713 0.83289 1.16746 1.17791 1.14319 1.21558 0.90492 1.03077 1.05066 1.20135 0.99228 0.89681 0.95129 1.19744 0.91561 0.94229 1.14834 0.90218 0.90640 0.89902 0.91682 0.89786 0.89804 0.85468 0.74922 0.90769 0.81624 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.48 36.01 0.38 -0.32 16 2 C 0.10 1.44 7.43 -80.18 -0.60 0.85 16 3 N -0.27 -4.14 12.40 34.84 0.43 -3.71 16 4 N -0.42 -6.32 4.05 -65.48 -0.27 -6.58 16 5 C 0.11 1.21 11.40 59.84 0.68 1.89 16 6 C 0.15 2.48 6.86 -84.18 -0.58 1.90 16 7 C -0.18 -2.94 9.92 -39.22 -0.39 -3.33 16 8 C 0.23 4.28 6.20 -83.76 -0.52 3.76 16 9 N -1.06 -20.04 5.75 32.43 0.19 -19.86 16 10 S 2.67 64.17 4.16 -107.50 -0.45 63.73 16 11 O -1.00 -25.73 16.02 -57.17 -0.92 -26.64 16 12 O -1.00 -24.83 13.72 -57.17 -0.78 -25.61 16 13 C -1.01 -27.73 10.21 30.60 0.31 -27.42 16 14 H 0.12 3.48 8.06 -52.49 -0.42 3.06 16 15 C 0.15 4.35 5.47 -17.82 -0.10 4.26 16 16 N -0.82 -23.38 13.96 55.43 0.77 -22.60 16 17 Si 0.80 20.02 26.54 -169.99 -4.51 15.51 16 18 H -0.24 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.25 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.22 -5.58 5.61 56.52 0.32 -5.26 16 21 C -0.18 -3.32 9.10 -39.76 -0.36 -3.68 16 22 C -0.02 -0.33 10.05 -39.62 -0.40 -0.73 16 23 C -0.20 -3.19 6.33 -105.16 -0.67 -3.86 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.42 6.38 8.95 -34.47 -0.31 6.07 16 32 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.17 3.22 5.53 -52.49 -0.29 2.93 16 34 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -34.01 305.68 -6.78 -40.79 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -3.62 Total: 7.04 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -2.23 Total: -26.67 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 1.13 Total: -52.75 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -1.70 Total: -52.25 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.51 Total: 15.51 kcal Atomic # 16 Polarization: 64.17 SS G_CDS: -0.45 Total: 63.73 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.01 -6.78 -40.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.197 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds