Wall clock time and date at job start Tue Mar 31 2020 07:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30233 * 126.09471 * 2 1 4 4 N 1.39869 * 110.09196 * 179.97438 * 3 2 1 5 5 C 1.46495 * 125.46201 * 180.02562 * 4 3 2 6 6 C 1.37070 * 109.06699 * 359.97438 * 4 3 2 7 7 C 1.39201 * 133.73553 * 180.27492 * 6 4 3 8 8 C 1.38260 * 119.67199 * 180.17387 * 7 6 4 9 9 N 1.39666 * 119.74495 * 179.77322 * 8 7 6 10 10 S 1.65608 * 120.00045 * 224.72514 * 9 8 7 11 11 O 1.42093 * 106.40109 * 178.26723 * 10 9 8 12 12 O 1.42107 * 106.40103 * 311.18707 * 10 9 8 13 13 C 1.76202 * 107.21687 * 64.72447 * 10 9 8 14 14 H 1.08001 * 119.99832 * 359.97438 * 13 10 9 15 15 C 1.37874 * 119.99924 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00167 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 120.00039 * 0.02562 * 15 13 10 18 18 H 1.48508 * 109.47136 * 89.99881 * 17 15 13 19 19 H 1.48501 * 109.47292 * 209.99949 * 17 15 13 20 20 H 1.48502 * 109.47308 * 330.00222 * 17 15 13 21 21 C 1.39632 * 120.50584 * 359.49920 * 8 7 6 22 22 C 1.36290 * 120.55950 * 0.27220 * 21 8 7 23 23 C 1.39995 * 119.88500 * 359.97438 * 22 21 8 24 24 H 1.08999 * 109.47368 * 270.04144 * 1 2 3 25 25 H 1.09000 * 109.47312 * 30.05139 * 1 2 3 26 26 H 1.09000 * 109.46848 * 150.04660 * 1 2 3 27 27 H 1.09010 * 109.47051 * 89.97988 * 5 4 3 28 28 H 1.08999 * 109.47138 * 209.97528 * 5 4 3 29 29 H 1.08995 * 109.47720 * 329.97827 * 5 4 3 30 30 H 1.07991 * 120.16585 * 359.92690 * 7 6 4 31 31 H 0.97000 * 120.00611 * 44.45015 * 9 8 7 32 32 H 0.96996 * 120.00618 * 179.97438 * 16 15 13 33 33 H 1.08000 * 119.71990 * 180.25522 * 21 8 7 34 34 H 1.08000 * 120.05504 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0523 0.0000 4 7 3.6187 0.6667 0.0006 5 6 4.7646 1.5794 0.0013 6 6 3.6920 -0.7020 0.0016 7 6 4.7478 -1.6092 0.0073 8 6 4.4840 -2.9664 0.0029 9 7 5.5422 -3.8779 0.0038 10 16 5.5076 -5.1878 -1.0090 11 8 6.7266 -5.8877 -0.8014 12 8 4.2296 -5.7874 -0.8461 13 6 5.5618 -4.5726 -2.6593 14 1 5.6073 -3.5084 -2.8376 15 6 5.5450 -5.4497 -3.7228 16 7 5.5859 -4.9906 -4.9545 17 14 5.4641 -7.2903 -3.4144 18 1 4.0439 -7.7208 -3.3577 19 1 6.1552 -8.0077 -4.5157 20 1 6.1287 -7.6057 -2.1244 21 6 3.1678 -3.4327 0.0033 22 6 2.1227 -2.5578 0.0025 23 6 2.3670 -1.1794 0.0017 24 1 -0.3634 0.0007 1.0276 25 1 -0.3634 0.8895 -0.5146 26 1 -0.3633 -0.8904 -0.5131 27 1 5.0481 1.8059 1.0292 28 1 5.6037 1.1095 -0.5118 29 1 4.4949 2.5019 -0.5128 30 1 5.7678 -1.2547 0.0110 31 1 6.2992 -3.7418 0.5948 32 1 5.5745 -5.6077 -5.7028 33 1 2.9763 -4.4956 0.0040 34 1 1.1080 -2.9274 0.0032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:42 Heat of formation + Delta-G solvation = -14.112745 kcal Electronic energy + Delta-G solvation = -21441.557694 eV Core-core repulsion = 18080.713140 eV Total energy + Delta-G solvation = -3360.844554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.24164 -39.13827 -37.72296 -36.61131 -35.42295 -35.19990 -34.78114 -31.29906 -30.29308 -29.48119 -28.58941 -26.26279 -23.83360 -23.04427 -21.26192 -20.66622 -19.54235 -18.81073 -18.66058 -17.89660 -17.36533 -16.82139 -16.51767 -15.95993 -15.65763 -15.28888 -15.08559 -14.97277 -14.57675 -14.36859 -14.06768 -13.74378 -13.63824 -13.49969 -13.32734 -13.04899 -12.98905 -12.68660 -12.61619 -12.54238 -12.08845 -11.84126 -11.64455 -11.46405 -11.33733 -11.06732 -10.80107 -9.22560 -8.96865 -8.79110 -7.55360 -0.27105 0.11002 0.52627 1.06594 1.16579 1.22026 1.45024 1.47357 1.89168 2.32062 2.42960 2.74556 3.17237 3.47187 3.58663 3.74261 3.90458 4.13601 4.30372 4.35381 4.38707 4.43161 4.60590 4.64479 4.75067 4.86635 4.92923 5.06173 5.13182 5.34693 5.39977 5.49658 5.59862 5.84997 5.99052 6.02487 6.21855 6.51336 6.66655 8.20973 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.004884 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.464046 B = 5731.274329 C = 5841.000394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.102 3.898 3 N -0.284 5.284 4 N -0.420 5.420 5 C 0.103 3.897 6 C 0.131 3.869 7 C -0.173 4.173 8 C 0.205 3.795 9 N -1.048 6.048 10 S 2.697 3.303 11 O -1.017 7.017 12 O -1.007 7.007 13 C -1.033 5.033 14 H 0.100 0.900 15 C 0.109 3.891 16 N -0.853 5.853 17 Si 0.828 3.172 18 H -0.233 1.233 19 H -0.222 1.222 20 H -0.227 1.227 21 C -0.208 4.208 22 C -0.011 4.011 23 C -0.211 4.211 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.432 0.568 32 H 0.292 0.708 33 H 0.153 0.847 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 9.654 10.466 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.075 4.075 3 N -0.098 5.098 4 N -0.208 5.208 5 C -0.037 4.037 6 C 0.015 3.985 7 C -0.200 4.200 8 C 0.106 3.894 9 N -0.798 5.798 10 S 2.798 3.202 11 O -1.007 7.007 12 O -0.996 6.996 13 C -1.166 5.166 14 H 0.119 0.881 15 C -0.108 4.108 16 N -0.483 5.483 17 Si 0.644 3.356 18 H -0.156 1.156 19 H -0.144 1.144 20 H -0.149 1.149 21 C -0.230 4.230 22 C -0.032 4.032 23 C -0.220 4.220 24 H 0.119 0.881 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.165 0.835 31 H 0.270 0.730 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.301 10.083 10.437 15.821 hybrid contribution 0.972 -0.765 -0.649 1.397 sum -5.330 9.318 9.788 14.527 Atomic orbital electron populations 1.20430 0.82759 1.04991 1.04860 1.24147 0.98281 0.87636 0.97426 1.76428 0.87568 1.24264 1.21509 1.48322 1.04627 1.02445 1.65424 1.22013 0.84211 0.93349 1.04153 1.18665 0.95575 0.85221 0.99000 1.19917 0.98365 0.89982 1.11690 1.17274 0.87078 0.88502 0.96592 1.52958 1.28936 1.42769 1.55156 1.00776 0.72832 0.71728 0.74852 1.93466 1.47808 1.71777 1.87633 1.93347 1.43166 1.75655 1.87473 1.30797 1.66656 1.05192 1.13974 0.88142 1.25185 0.88478 1.02815 0.94339 1.70012 1.40022 1.38681 0.99561 0.87454 0.82958 0.81105 0.84088 1.15624 1.14371 1.14909 1.21573 0.91307 1.02874 1.07230 1.20431 1.00195 0.89365 0.93168 1.20132 0.92150 0.94950 1.14731 0.88106 0.89551 0.88468 0.89764 0.88908 0.88549 0.83540 0.73012 0.89750 0.83002 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.48 71.24 0.75 -0.44 16 2 C 0.10 2.74 7.43 44.80 0.33 3.08 16 3 N -0.28 -8.32 12.40 -43.68 -0.54 -8.86 16 4 N -0.42 -12.14 4.05 -361.08 -1.46 -13.61 16 5 C 0.10 2.01 11.40 127.77 1.46 3.46 16 6 C 0.13 4.26 6.86 39.19 0.27 4.53 16 7 C -0.17 -5.68 9.92 22.51 0.22 -5.45 16 8 C 0.20 7.55 6.20 38.23 0.24 7.79 16 9 N -1.05 -39.40 5.75 -51.33 -0.30 -39.70 16 10 S 2.70 129.73 4.16 -56.49 -0.23 129.49 16 11 O -1.02 -52.01 16.02 -128.00 -2.05 -54.07 16 12 O -1.01 -49.93 13.72 -128.00 -1.76 -51.69 16 13 C -1.03 -57.73 10.21 67.73 0.69 -57.04 16 14 H 0.10 5.89 8.06 -2.91 -0.02 5.87 16 15 C 0.11 6.19 5.47 84.65 0.46 6.65 16 16 N -0.85 -49.20 13.96 21.45 0.30 -48.90 16 17 Si 0.83 40.05 26.54 68.60 1.82 41.87 16 18 H -0.23 -10.81 7.11 99.48 0.71 -10.11 16 19 H -0.22 -9.50 7.11 99.48 0.71 -8.79 16 20 H -0.23 -11.15 5.61 99.48 0.56 -10.59 16 21 C -0.21 -7.60 9.10 22.15 0.20 -7.40 16 22 C -0.01 -0.34 10.05 22.24 0.22 -0.11 16 23 C -0.21 -6.60 6.33 -20.22 -0.13 -6.73 16 24 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.09 1.63 8.13 -2.39 -0.02 1.61 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.15 4.04 8.06 -2.92 -0.02 4.01 16 31 H 0.43 13.01 8.95 -96.75 -0.87 12.14 16 32 H 0.29 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.15 5.93 5.53 -2.91 -0.02 5.92 16 34 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -72.95 305.68 0.63 -72.32 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.13 Total: 24.80 kcal Atomic # 6 Polarization: -56.38 SS G_CDS: 4.72 Total: -51.66 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -2.00 Total: -111.07 kcal Atomic # 8 Polarization: -101.94 SS G_CDS: -3.81 Total: -105.75 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.82 Total: 41.87 kcal Atomic # 16 Polarization: 129.73 SS G_CDS: -0.23 Total: 129.49 kcal Total: -72.95 0.63 -72.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.208 kcal (2) G-P(sol) polarization free energy of solvation -72.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds