Wall clock time and date at job start Tue Mar 31 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43203 * 119.99860 * 103.08920 * 3 2 1 5 5 N 3.51037 * 140.68965 * 103.08322 * 2 1 3 6 6 C 1.41147 * 119.99867 * 283.08266 * 3 2 1 7 7 C 1.38993 * 120.00179 * 7.23455 * 6 3 2 8 8 H 1.07999 * 119.99796 * 225.05988 * 7 6 3 9 9 C 1.40819 * 120.00102 * 45.05058 * 7 6 3 10 10 N 1.30345 * 119.99712 * 12.89188 * 9 7 6 11 11 Si 1.86791 * 120.00068 * 192.89042 * 9 7 6 12 12 H 1.48501 * 109.47335 * 60.00252 * 11 9 7 13 13 H 1.48497 * 109.47266 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47254 * 300.00451 * 11 9 7 15 15 N 1.38230 * 119.99874 * 187.22962 * 6 3 2 16 16 S 1.65598 * 120.00111 * 182.21632 * 15 6 3 17 17 O 1.42100 * 104.27992 * 179.61049 * 16 15 6 18 18 O 1.42096 * 104.27766 * 307.47160 * 16 15 6 19 19 C 1.81408 * 104.44969 * 63.53989 * 16 15 6 20 20 C 1.52995 * 109.47185 * 184.31869 * 19 16 15 21 21 C 1.53780 * 113.61108 * 274.13473 * 20 19 16 22 22 C 1.53951 * 87.02090 * 220.05070 * 21 20 19 23 23 C 1.53783 * 113.61132 * 176.52928 * 20 19 16 24 24 H 0.97000 * 119.99762 * 184.95140 * 10 9 7 25 25 H 0.97002 * 119.99971 * 2.49389 * 15 6 3 26 26 H 1.09007 * 109.46741 * 304.31702 * 19 16 15 27 27 H 1.08996 * 109.47325 * 64.31108 * 19 16 15 28 28 H 1.08993 * 112.85131 * 45.32995 * 20 19 16 29 29 H 1.09003 * 113.61796 * 334.56733 * 21 20 19 30 30 H 1.09007 * 113.61637 * 105.47096 * 21 20 19 31 31 H 1.09009 * 113.53688 * 270.81636 * 22 21 20 32 32 H 1.08996 * 113.67480 * 139.93349 * 22 21 20 33 33 H 1.09003 * 113.61278 * 254.52182 * 23 20 19 34 34 H 1.08989 * 113.61687 * 25.34944 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2839 0.2818 -1.2080 5 7 3.8520 0.5034 -2.1662 6 6 3.2738 -0.2757 1.1907 7 6 2.5874 -0.6951 2.3242 8 1 2.8181 -0.2620 3.2862 9 6 1.5909 -1.6844 2.2181 10 7 1.4810 -2.3840 1.1237 11 14 0.4268 -1.9943 3.6456 12 1 -0.3310 -0.7528 3.9450 13 1 -0.5215 -3.0786 3.2846 14 1 1.2075 -2.3984 4.8424 15 7 4.6478 -0.1295 1.2294 16 16 5.4820 -0.5062 2.6094 17 8 6.8397 -0.2456 2.2805 18 8 4.8214 0.2292 3.6301 19 6 5.2111 -2.2862 2.8305 20 6 5.8499 -2.7401 4.1445 21 6 7.3406 -3.0948 4.0144 22 6 7.0597 -4.2756 4.9614 23 6 5.6036 -4.2229 4.4693 24 1 0.7510 -3.0147 1.0226 25 1 5.1229 0.1977 0.4495 26 1 4.1406 -2.4902 2.8574 27 1 5.6634 -2.8285 2.0002 28 1 5.6316 -2.0690 4.9752 29 1 7.6306 -3.4007 3.0092 30 1 8.0069 -2.3431 4.4380 31 1 7.1734 -4.0245 6.0160 32 1 7.5811 -5.1920 4.6849 33 1 4.8697 -4.3807 5.2596 34 1 5.4165 -4.8375 3.5889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193533630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:49 Heat of formation + Delta-G solvation = -5.640637 kcal Electronic energy + Delta-G solvation = -21737.056105 eV Core-core repulsion = 18376.578930 eV Total energy + Delta-G solvation = -3360.477175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.88164 -37.68707 -36.67194 -35.60806 -35.02434 -34.77106 -33.49186 -30.28273 -29.69658 -27.11674 -25.68073 -23.39513 -22.07299 -19.88442 -19.46516 -18.38275 -18.04888 -16.90221 -16.49355 -16.08234 -15.47808 -15.35642 -14.78314 -14.63014 -13.53498 -13.48816 -13.16225 -12.60002 -12.50247 -12.39725 -12.36661 -12.21918 -11.93371 -11.83439 -11.75377 -11.70841 -11.59293 -11.52074 -11.27706 -11.05940 -10.99985 -10.91955 -10.72721 -10.65952 -10.30979 -10.25995 -9.90462 -9.55901 -7.47566 -7.25369 -5.48613 0.59139 2.29366 2.85880 2.89479 2.91294 3.04081 3.59559 3.75153 4.02850 4.04806 4.28884 4.35840 4.40813 4.50387 4.62028 4.70651 4.77839 5.14458 5.21199 5.30659 5.47977 5.62666 5.66615 5.71387 5.76248 5.83601 5.90798 6.08219 6.14244 6.26410 6.40437 6.53256 6.95656 7.36047 7.68472 7.95597 8.02911 8.80603 9.23141 9.50778 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.007404 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.292854 B = 3780.870483 C = 5005.364897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.350 3.650 3 C -0.249 4.249 4 C 0.300 3.700 5 N -0.523 5.523 6 C 0.426 3.574 7 C -0.512 4.512 8 H 0.137 0.863 9 C 0.093 3.907 10 N -0.736 5.736 11 Si 0.913 3.087 12 H -0.252 1.252 13 H -0.271 1.271 14 H -0.254 1.254 15 N -1.049 6.049 16 S 2.610 3.390 17 O -0.969 6.969 18 O -0.944 6.944 19 C -0.607 4.607 20 C -0.105 4.105 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.124 4.124 24 H 0.301 0.699 25 H 0.414 0.586 26 H 0.161 0.839 27 H 0.130 0.870 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -6.795 9.528 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C 0.040 3.960 3 C -0.269 4.269 4 C -0.008 4.008 5 N -0.205 5.205 6 C 0.318 3.682 7 C -0.544 4.544 8 H 0.154 0.846 9 C -0.137 4.137 10 N -0.356 5.356 11 Si 0.735 3.265 12 H -0.175 1.175 13 H -0.196 1.196 14 H -0.178 1.178 15 N -0.791 5.791 16 S 2.706 3.294 17 O -0.959 6.959 18 O -0.934 6.934 19 C -0.738 4.738 20 C -0.125 4.125 21 C -0.185 4.185 22 C -0.180 4.180 23 C -0.162 4.162 24 H 0.114 0.886 25 H 0.249 0.751 26 H 0.179 0.821 27 H 0.148 0.852 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.152 -6.105 8.592 12.737 hybrid contribution -0.542 -0.756 0.033 0.931 sum 6.610 -6.860 8.625 12.851 Atomic orbital electron populations 1.80964 1.12294 1.17745 1.09683 1.24215 0.91015 0.89327 0.91426 1.12726 0.83759 1.41713 0.88671 1.25418 0.92748 0.90535 0.92054 1.81090 1.09868 1.18777 1.10759 1.16830 0.78894 0.80160 0.92305 1.19989 1.18449 1.19218 0.96701 0.84588 1.25959 0.96198 0.93339 0.98185 1.69460 1.26152 1.14363 1.25608 0.86177 0.79826 0.80130 0.80361 1.17517 1.19564 1.17760 1.54127 1.15832 1.76018 1.33077 1.04970 0.72735 0.78233 0.73422 1.93569 1.34185 1.84888 1.83281 1.93575 1.74741 1.68035 1.57095 1.30468 1.13477 1.24675 1.05161 1.22301 0.96091 0.99013 0.95064 1.23208 0.95475 0.98846 1.00984 1.22844 0.97008 0.98681 0.99476 1.22873 0.96860 0.94911 1.01605 0.88641 0.75086 0.82095 0.85185 0.87812 0.89288 0.90748 0.90051 0.91266 0.91003 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.90 18.54 41.84 0.78 -12.12 16 2 C 0.35 8.32 11.72 -22.47 -0.26 8.06 16 3 C -0.25 -5.52 5.33 -104.94 -0.56 -6.08 16 4 C 0.30 6.65 14.11 -22.48 -0.32 6.33 16 5 N -0.52 -11.86 18.54 41.83 0.78 -11.09 16 6 C 0.43 8.71 6.03 -83.60 -0.50 8.20 16 7 C -0.51 -10.39 5.54 -38.33 -0.21 -10.61 16 8 H 0.14 2.71 5.83 -52.49 -0.31 2.41 16 9 C 0.09 1.88 4.05 -17.21 -0.07 1.81 16 10 N -0.74 -15.39 11.06 55.59 0.62 -14.78 16 11 Si 0.91 16.25 29.59 -169.99 -5.03 11.22 16 12 H -0.25 -4.74 7.11 56.52 0.40 -4.34 16 13 H -0.27 -4.79 7.11 56.52 0.40 -4.38 16 14 H -0.25 -4.17 7.11 56.52 0.40 -3.77 16 15 N -1.05 -18.73 5.64 32.59 0.18 -18.54 16 16 S 2.61 42.82 5.03 -107.50 -0.54 42.28 16 17 O -0.97 -17.18 18.08 -57.54 -1.04 -18.22 16 18 O -0.94 -17.69 15.56 -57.54 -0.90 -18.58 16 19 C -0.61 -8.21 5.67 37.16 0.21 -8.00 16 20 C -0.10 -1.25 3.64 -89.81 -0.33 -1.57 16 21 C -0.15 -1.57 7.65 -25.83 -0.20 -1.77 16 22 C -0.14 -1.29 8.09 -25.83 -0.21 -1.50 16 23 C -0.12 -1.27 7.65 -25.91 -0.20 -1.47 16 24 H 0.30 6.01 8.29 -40.82 -0.34 5.67 16 25 H 0.41 7.03 7.65 -34.47 -0.26 6.77 16 26 H 0.16 2.32 6.18 -51.92 -0.32 2.00 16 27 H 0.13 1.53 7.87 -51.93 -0.41 1.12 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.09 0.91 7.92 -51.93 -0.41 0.50 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.87 8.10 -51.94 -0.42 0.45 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -27.09 315.38 -6.43 -33.51 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -3.38 Total: 8.17 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.65 Total: -6.60 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 2.35 Total: -56.53 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.94 Total: -36.81 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.03 Total: 11.22 kcal Atomic # 16 Polarization: 42.82 SS G_CDS: -0.54 Total: 42.28 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.09 -6.43 -33.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193533630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.874 kcal (2) G-P(sol) polarization free energy of solvation -27.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds