Wall clock time and date at job start Tue Mar 31 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43203 * 119.99860 * 103.08920 * 3 2 1 5 5 N 3.51037 * 140.68965 * 103.08322 * 2 1 3 6 6 C 1.41147 * 119.99867 * 283.08266 * 3 2 1 7 7 C 1.38993 * 120.00179 * 7.23455 * 6 3 2 8 8 H 1.07999 * 119.99796 * 225.05988 * 7 6 3 9 9 C 1.40819 * 120.00102 * 45.05058 * 7 6 3 10 10 N 1.30345 * 119.99712 * 12.89188 * 9 7 6 11 11 Si 1.86791 * 120.00068 * 192.89042 * 9 7 6 12 12 H 1.48501 * 109.47335 * 60.00252 * 11 9 7 13 13 H 1.48497 * 109.47266 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47254 * 300.00451 * 11 9 7 15 15 N 1.38230 * 119.99874 * 187.22962 * 6 3 2 16 16 S 1.65598 * 120.00111 * 182.21632 * 15 6 3 17 17 O 1.42100 * 104.27992 * 179.61049 * 16 15 6 18 18 O 1.42096 * 104.27766 * 307.47160 * 16 15 6 19 19 C 1.81408 * 104.44969 * 63.53989 * 16 15 6 20 20 C 1.52995 * 109.47185 * 184.31869 * 19 16 15 21 21 C 1.53780 * 113.61108 * 274.13473 * 20 19 16 22 22 C 1.53951 * 87.02090 * 220.05070 * 21 20 19 23 23 C 1.53783 * 113.61132 * 176.52928 * 20 19 16 24 24 H 0.97000 * 119.99762 * 184.95140 * 10 9 7 25 25 H 0.97002 * 119.99971 * 2.49389 * 15 6 3 26 26 H 1.09007 * 109.46741 * 304.31702 * 19 16 15 27 27 H 1.08996 * 109.47325 * 64.31108 * 19 16 15 28 28 H 1.08993 * 112.85131 * 45.32995 * 20 19 16 29 29 H 1.09003 * 113.61796 * 334.56733 * 21 20 19 30 30 H 1.09007 * 113.61637 * 105.47096 * 21 20 19 31 31 H 1.09009 * 113.53688 * 270.81636 * 22 21 20 32 32 H 1.08996 * 113.67480 * 139.93349 * 22 21 20 33 33 H 1.09003 * 113.61278 * 254.52182 * 23 20 19 34 34 H 1.08989 * 113.61687 * 25.34944 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2839 0.2818 -1.2080 5 7 3.8520 0.5034 -2.1662 6 6 3.2738 -0.2757 1.1907 7 6 2.5874 -0.6951 2.3242 8 1 2.8181 -0.2620 3.2862 9 6 1.5909 -1.6844 2.2181 10 7 1.4810 -2.3840 1.1237 11 14 0.4268 -1.9943 3.6456 12 1 -0.3310 -0.7528 3.9450 13 1 -0.5215 -3.0786 3.2846 14 1 1.2075 -2.3984 4.8424 15 7 4.6478 -0.1295 1.2294 16 16 5.4820 -0.5062 2.6094 17 8 6.8397 -0.2456 2.2805 18 8 4.8214 0.2292 3.6301 19 6 5.2111 -2.2862 2.8305 20 6 5.8499 -2.7401 4.1445 21 6 7.3406 -3.0948 4.0144 22 6 7.0597 -4.2756 4.9614 23 6 5.6036 -4.2229 4.4693 24 1 0.7510 -3.0147 1.0226 25 1 5.1229 0.1977 0.4495 26 1 4.1406 -2.4902 2.8574 27 1 5.6634 -2.8285 2.0002 28 1 5.6316 -2.0690 4.9752 29 1 7.6306 -3.4007 3.0092 30 1 8.0069 -2.3431 4.4380 31 1 7.1734 -4.0245 6.0160 32 1 7.5811 -5.1920 4.6849 33 1 4.8697 -4.3807 5.2596 34 1 5.4165 -4.8375 3.5889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193533630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:49 Heat of formation + Delta-G solvation = -22.423987 kcal Electronic energy + Delta-G solvation = -21737.783886 eV Core-core repulsion = 18376.578930 eV Total energy + Delta-G solvation = -3361.204956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.70908 -39.28653 -38.09831 -37.02068 -36.75423 -36.54631 -35.10185 -31.34519 -31.29673 -28.76208 -26.46572 -24.32281 -23.64081 -21.36441 -20.34346 -19.99482 -19.53087 -18.42393 -17.85073 -17.41022 -16.87019 -16.58200 -15.99149 -15.53962 -15.00352 -14.91616 -14.52692 -14.36601 -14.02512 -13.84753 -13.49810 -13.39610 -13.31869 -13.31177 -13.26418 -13.15035 -13.06393 -12.86234 -12.69910 -12.66754 -12.65717 -12.15148 -12.00275 -11.84767 -11.45079 -11.17349 -11.08551 -10.88715 -9.05892 -8.91105 -7.15827 -0.71540 0.67484 1.41143 1.47339 1.52763 1.64402 1.97917 2.12926 2.25950 2.52183 2.63093 2.81306 3.27596 3.43709 3.57990 3.64479 3.74776 3.80269 4.00569 4.17362 4.22017 4.42036 4.53988 4.72940 4.92703 4.93767 4.94019 5.02631 5.13440 5.19713 5.31978 5.33303 5.61649 5.78292 6.08000 6.33101 6.42133 7.05498 7.39762 7.93195 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.007404 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.292854 B = 3780.870483 C = 5005.364897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C 0.352 3.648 3 C -0.272 4.272 4 C 0.307 3.693 5 N -0.538 5.538 6 C 0.433 3.567 7 C -0.512 4.512 8 H 0.141 0.859 9 C 0.073 3.927 10 N -0.749 5.749 11 Si 0.948 3.052 12 H -0.270 1.270 13 H -0.268 1.268 14 H -0.226 1.226 15 N -1.048 6.048 16 S 2.607 3.393 17 O -0.983 6.983 18 O -0.970 6.970 19 C -0.586 4.586 20 C -0.120 4.120 21 C -0.156 4.156 22 C -0.133 4.133 23 C -0.123 4.123 24 H 0.305 0.695 25 H 0.418 0.582 26 H 0.157 0.843 27 H 0.150 0.850 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.178 -8.397 10.969 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.232 5.232 2 C 0.043 3.957 3 C -0.292 4.292 4 C 0.001 3.999 5 N -0.221 5.221 6 C 0.323 3.677 7 C -0.543 4.543 8 H 0.159 0.841 9 C -0.156 4.156 10 N -0.369 5.369 11 Si 0.768 3.232 12 H -0.194 1.194 13 H -0.192 1.192 14 H -0.149 1.149 15 N -0.787 5.787 16 S 2.708 3.292 17 O -0.974 6.974 18 O -0.960 6.960 19 C -0.720 4.720 20 C -0.140 4.140 21 C -0.193 4.193 22 C -0.170 4.170 23 C -0.161 4.161 24 H 0.117 0.883 25 H 0.252 0.748 26 H 0.175 0.825 27 H 0.168 0.832 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.806 -7.672 10.018 14.838 hybrid contribution -0.692 -0.298 -0.355 0.833 sum 7.114 -7.971 9.663 14.406 Atomic orbital electron populations 1.80945 1.12854 1.19118 1.10319 1.24499 0.91392 0.88831 0.90936 1.12793 0.83255 1.43779 0.89354 1.25402 0.92493 0.90171 0.91882 1.81084 1.10287 1.19733 1.10982 1.16842 0.79796 0.79344 0.91733 1.20192 1.18435 1.18939 0.96748 0.84119 1.26467 0.96691 0.92975 0.99512 1.69483 1.26489 1.14485 1.26493 0.85666 0.78690 0.79269 0.79597 1.19430 1.19233 1.14881 1.54127 1.14969 1.75987 1.33618 1.05055 0.72042 0.79649 0.72483 1.93547 1.34696 1.85913 1.83233 1.93535 1.74991 1.69999 1.57516 1.30316 1.13613 1.20817 1.07283 1.22543 0.97151 1.00322 0.94014 1.23311 0.94464 0.99728 1.01830 1.22835 0.96010 0.98488 0.99702 1.22917 0.97973 0.93186 1.02063 0.88300 0.74768 0.82529 0.83215 0.87594 0.88939 0.90777 0.88994 0.89904 0.90279 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -26.98 18.54 19.00 0.35 -26.63 16 2 C 0.35 16.72 11.72 88.33 1.04 17.75 16 3 C -0.27 -12.00 5.33 -20.07 -0.11 -12.11 16 4 C 0.31 13.59 14.11 88.33 1.25 14.83 16 5 N -0.54 -24.31 18.54 19.00 0.35 -23.95 16 6 C 0.43 17.41 6.03 39.03 0.24 17.65 16 7 C -0.51 -20.23 5.54 23.08 0.13 -20.11 16 8 H 0.14 5.45 5.83 -2.91 -0.02 5.43 16 9 C 0.07 2.82 4.05 85.54 0.35 3.16 16 10 N -0.75 -30.53 11.06 21.98 0.24 -30.29 16 11 Si 0.95 31.49 29.59 68.60 2.03 33.51 16 12 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 13 H -0.27 -8.75 7.11 99.48 0.71 -8.05 16 14 H -0.23 -6.53 7.11 99.48 0.71 -5.82 16 15 N -1.05 -36.80 5.64 -50.80 -0.29 -37.09 16 16 S 2.61 83.09 5.03 -56.49 -0.28 82.80 16 17 O -0.98 -34.07 18.08 -127.65 -2.31 -36.37 16 18 O -0.97 -35.66 15.56 -127.65 -1.99 -37.65 16 19 C -0.59 -14.69 5.67 71.98 0.41 -14.28 16 20 C -0.12 -2.57 3.64 -10.27 -0.04 -2.60 16 21 C -0.16 -2.94 7.65 31.18 0.24 -2.70 16 22 C -0.13 -1.98 8.09 31.18 0.25 -1.73 16 23 C -0.12 -2.13 7.65 31.12 0.24 -1.89 16 24 H 0.30 11.82 8.29 -92.71 -0.77 11.06 16 25 H 0.42 14.06 7.65 -96.75 -0.74 13.32 16 26 H 0.16 4.18 6.18 -2.39 -0.01 4.17 16 27 H 0.15 3.16 7.87 -2.39 -0.02 3.14 16 28 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.09 1.66 7.92 -2.39 -0.02 1.64 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -55.91 315.38 2.52 -53.39 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.43 Total: 24.31 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 3.98 Total: -2.03 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: 0.66 Total: -117.96 kcal Atomic # 8 Polarization: -69.73 SS G_CDS: -4.29 Total: -74.02 kcal Atomic # 14 Polarization: 31.49 SS G_CDS: 2.03 Total: 33.51 kcal Atomic # 16 Polarization: 83.09 SS G_CDS: -0.28 Total: 82.80 kcal Total: -55.91 2.52 -53.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193533630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.963 kcal (2) G-P(sol) polarization free energy of solvation -55.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds