Wall clock time and date at job start Tue Mar 31 2020 06:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99902 * 2 1 4 4 C 1.50694 * 109.47215 * 274.99998 * 3 2 1 5 5 H 1.08005 * 120.00185 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99963 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00295 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 120.00083 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47281 * 59.99889 * 8 6 4 10 10 H 1.48498 * 109.47070 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46828 * 300.00005 * 8 6 4 12 12 S 1.65598 * 120.00287 * 180.02562 * 2 1 3 13 13 O 1.42094 * 106.40656 * 156.45912 * 12 2 1 14 14 O 1.42101 * 106.40190 * 23.53836 * 12 2 1 15 15 C 1.76198 * 107.21880 * 270.00205 * 12 2 1 16 16 C 1.38738 * 119.79783 * 89.99522 * 15 12 2 17 17 C 1.37848 * 120.69043 * 180.02562 * 16 15 12 18 18 C 1.38937 * 119.81556 * 0.02562 * 17 16 15 19 19 O 1.34814 * 133.49351 * 180.02562 * 18 17 16 20 20 C 1.34443 * 110.88753 * 179.97438 * 19 18 17 21 21 C 1.33998 * 110.15778 * 0.02562 * 20 19 18 22 22 C 1.40484 * 119.22530 * 359.97438 * 18 17 16 23 23 C 1.36748 * 119.78950 * 270.01968 * 15 12 2 24 24 H 1.09004 * 109.47115 * 269.99417 * 1 2 3 25 25 H 1.08994 * 109.47475 * 29.99690 * 1 2 3 26 26 H 1.09001 * 109.47173 * 150.00467 * 1 2 3 27 27 H 1.09000 * 109.46930 * 35.00506 * 3 2 1 28 28 H 1.09001 * 109.47060 * 154.99587 * 3 2 1 29 29 H 0.97001 * 120.00326 * 179.97438 * 7 6 4 30 30 H 1.08003 * 119.65307 * 359.97438 * 16 15 12 31 31 H 1.08000 * 120.09001 * 179.97438 * 17 16 15 32 32 H 1.07999 * 124.92514 * 179.97438 * 20 19 18 33 33 H 1.08001 * 126.91274 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.14000 * 359.97438 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1939 -2.2331 6 6 2.9997 2.9509 -1.6662 7 7 3.5024 3.6474 -0.6705 8 14 3.1775 3.5673 -3.4207 9 1 1.8309 3.7727 -4.0121 10 1 3.9201 4.8533 -3.4206 11 1 3.9234 2.5656 -4.2241 12 16 2.2931 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5449 14 8 1.4114 -2.4063 -0.5455 15 6 2.5538 -1.8866 1.6822 16 6 1.6132 -2.6655 2.3404 17 6 1.7983 -3.0298 3.6569 18 6 2.9373 -2.6139 4.3351 19 8 3.3902 -2.8021 5.5909 20 6 4.5706 -2.1847 5.7724 21 6 4.9450 -1.5638 4.6455 22 6 3.8861 -1.8253 3.6632 23 6 3.6819 -1.4672 2.3315 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1857 1.1177 0.4344 29 1 3.9659 4.4811 -0.8470 30 1 0.7262 -2.9893 1.8160 31 1 1.0596 -3.6361 4.1600 32 1 5.1349 -2.1880 6.6932 33 1 5.8452 -0.9875 4.4909 34 1 4.4113 -0.8610 1.8149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198818468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:42 Heat of formation + Delta-G solvation = -35.382533 kcal Electronic energy + Delta-G solvation = -21434.393503 eV Core-core repulsion = 18040.333871 eV Total energy + Delta-G solvation = -3394.059632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59943 -37.99655 -36.66482 -35.52537 -35.18505 -32.95864 -32.44400 -30.73626 -29.46740 -27.78250 -25.09005 -23.82638 -22.66051 -22.27262 -21.47548 -18.70705 -17.70139 -17.46290 -16.78849 -16.64232 -16.29364 -16.25032 -15.33935 -14.58317 -14.31502 -14.22477 -13.55039 -13.39601 -13.26686 -13.07923 -12.84203 -12.65668 -12.22262 -12.14380 -11.64463 -11.49768 -11.20865 -11.15385 -11.06649 -10.71793 -10.63588 -10.45957 -10.37365 -10.03238 -9.77046 -9.05655 -8.44743 -8.38907 -8.07324 -6.06906 -4.11170 0.74817 0.83898 1.07694 2.21261 2.57758 3.32050 3.34469 3.37859 3.42664 3.77647 4.25520 4.33389 4.45339 4.50250 4.82060 4.94140 5.09789 5.18995 5.27259 5.32605 5.46847 5.65050 5.71942 5.87691 6.01146 6.02570 6.09086 6.20689 6.27965 6.44429 6.54987 6.95366 7.19649 7.35966 7.56265 7.90238 8.18567 8.91059 9.54132 11.01683 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.004862 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.886091 B = 5757.857203 C = 6497.605182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.985 5.985 3 C 0.255 3.745 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.689 3.311 13 O -0.940 6.940 14 O -0.974 6.974 15 C -0.689 4.689 16 C -0.005 4.005 17 C -0.129 4.129 18 C 0.091 3.909 19 O -0.195 6.195 20 C -0.005 4.005 21 C -0.193 4.193 22 C -0.158 4.158 23 C 0.045 3.955 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.150 0.850 31 H 0.139 0.861 32 H 0.210 0.790 33 H 0.164 0.836 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 -10.742 12.318 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.826 5.826 3 C 0.133 3.867 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.199 1.199 12 S 2.777 3.223 13 O -0.931 6.931 14 O -0.965 6.965 15 C -0.772 4.772 16 C -0.025 4.025 17 C -0.148 4.148 18 C 0.042 3.958 19 O -0.096 6.096 20 C -0.069 4.069 21 C -0.211 4.211 22 C -0.159 4.159 23 C 0.026 3.974 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.227 0.773 33 H 0.181 0.819 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.471 -11.179 11.875 16.376 hybrid contribution 0.344 0.705 -0.019 0.784 sum -1.127 -10.475 11.856 15.860 Atomic orbital electron populations 1.21414 0.79725 1.03760 1.00478 1.57317 1.14366 1.22450 1.88464 1.19124 0.91115 0.78578 0.97876 1.21447 1.36274 1.06356 0.92809 0.92038 1.24922 0.95056 0.96448 0.97496 1.69907 1.37262 1.15354 1.31027 0.86570 0.78336 0.78006 0.84637 1.20143 1.21194 1.19924 1.02160 0.73803 0.72777 0.73608 1.93604 1.40138 1.84175 1.75140 1.93493 1.66491 1.60219 1.76256 1.31217 1.03516 1.13582 1.28906 1.20662 0.97152 0.92088 0.92549 1.19970 0.95770 1.04880 0.94218 1.19861 0.95979 0.97194 0.82744 1.84018 1.33792 1.62915 1.28909 1.23963 0.85620 0.96786 1.00543 1.22636 1.00946 1.05264 0.92303 1.20058 0.96586 1.03491 0.95795 1.20209 0.94183 0.91668 0.91318 0.94124 0.90058 0.91270 0.94489 0.94344 0.92609 0.83197 0.84361 0.77337 0.81885 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.54 10.68 59.85 0.64 2.18 16 2 N -0.99 -20.14 3.17 -123.05 -0.39 -20.53 16 3 C 0.25 6.28 5.08 -5.20 -0.03 6.25 16 4 C -0.53 -14.62 9.38 -34.44 -0.32 -14.94 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 S 2.69 52.98 5.64 -107.50 -0.61 52.37 16 13 O -0.94 -21.88 16.22 -57.17 -0.93 -22.81 16 14 O -0.97 -19.44 15.86 -57.17 -0.91 -20.35 16 15 C -0.69 -11.51 5.94 -39.94 -0.24 -11.75 16 16 C -0.01 -0.08 9.49 -39.54 -0.38 -0.45 16 17 C -0.13 -1.66 10.07 -39.47 -0.40 -2.06 16 18 C 0.09 1.27 7.42 -38.48 -0.29 0.99 16 19 O -0.20 -2.42 10.58 3.91 0.04 -2.38 16 20 C 0.00 -0.05 11.96 29.24 0.35 0.30 16 21 C -0.19 -2.25 11.14 -37.62 -0.42 -2.67 16 22 C -0.16 -2.36 6.40 -105.16 -0.67 -3.03 16 23 C 0.05 0.75 9.51 -39.69 -0.38 0.38 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 26 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 27 H 0.04 0.93 8.11 -51.93 -0.42 0.50 16 28 H 0.04 0.99 7.61 -51.93 -0.40 0.60 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.15 1.80 7.59 -52.48 -0.40 1.40 16 31 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.15 2.47 7.58 -52.49 -0.40 2.07 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -33.94 312.54 -8.22 -42.15 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.63 Total: -1.47 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.22 Total: -23.14 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.35 Total: -45.62 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.79 Total: -45.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 52.98 SS G_CDS: -0.61 Total: 52.37 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.94 -8.22 -42.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198818468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.772 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds