Wall clock time and date at job start Tue Mar 31 2020 06:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99902 * 2 1 4 4 C 1.50694 * 109.47215 * 274.99998 * 3 2 1 5 5 H 1.08005 * 120.00185 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99963 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00295 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 120.00083 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47281 * 59.99889 * 8 6 4 10 10 H 1.48498 * 109.47070 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46828 * 300.00005 * 8 6 4 12 12 S 1.65598 * 120.00287 * 180.02562 * 2 1 3 13 13 O 1.42094 * 106.40656 * 156.45912 * 12 2 1 14 14 O 1.42101 * 106.40190 * 23.53836 * 12 2 1 15 15 C 1.76198 * 107.21880 * 270.00205 * 12 2 1 16 16 C 1.38738 * 119.79783 * 89.99522 * 15 12 2 17 17 C 1.37848 * 120.69043 * 180.02562 * 16 15 12 18 18 C 1.38937 * 119.81556 * 0.02562 * 17 16 15 19 19 O 1.34814 * 133.49351 * 180.02562 * 18 17 16 20 20 C 1.34443 * 110.88753 * 179.97438 * 19 18 17 21 21 C 1.33998 * 110.15778 * 0.02562 * 20 19 18 22 22 C 1.40484 * 119.22530 * 359.97438 * 18 17 16 23 23 C 1.36748 * 119.78950 * 270.01968 * 15 12 2 24 24 H 1.09004 * 109.47115 * 269.99417 * 1 2 3 25 25 H 1.08994 * 109.47475 * 29.99690 * 1 2 3 26 26 H 1.09001 * 109.47173 * 150.00467 * 1 2 3 27 27 H 1.09000 * 109.46930 * 35.00506 * 3 2 1 28 28 H 1.09001 * 109.47060 * 154.99587 * 3 2 1 29 29 H 0.97001 * 120.00326 * 179.97438 * 7 6 4 30 30 H 1.08003 * 119.65307 * 359.97438 * 16 15 12 31 31 H 1.08000 * 120.09001 * 179.97438 * 17 16 15 32 32 H 1.07999 * 124.92514 * 179.97438 * 20 19 18 33 33 H 1.08001 * 126.91274 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.14000 * 359.97438 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1939 -2.2331 6 6 2.9997 2.9509 -1.6662 7 7 3.5024 3.6474 -0.6705 8 14 3.1775 3.5673 -3.4207 9 1 1.8309 3.7727 -4.0121 10 1 3.9201 4.8533 -3.4206 11 1 3.9234 2.5656 -4.2241 12 16 2.2931 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5449 14 8 1.4114 -2.4063 -0.5455 15 6 2.5538 -1.8866 1.6822 16 6 1.6132 -2.6655 2.3404 17 6 1.7983 -3.0298 3.6569 18 6 2.9373 -2.6139 4.3351 19 8 3.3902 -2.8021 5.5909 20 6 4.5706 -2.1847 5.7724 21 6 4.9450 -1.5638 4.6455 22 6 3.8861 -1.8253 3.6632 23 6 3.6819 -1.4672 2.3315 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1857 1.1177 0.4344 29 1 3.9659 4.4811 -0.8470 30 1 0.7262 -2.9893 1.8160 31 1 1.0596 -3.6361 4.1600 32 1 5.1349 -2.1880 6.6932 33 1 5.8452 -0.9875 4.4909 34 1 4.4113 -0.8610 1.8149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198818468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:42 Heat of formation + Delta-G solvation = -58.894277 kcal Electronic energy + Delta-G solvation = -21435.413048 eV Core-core repulsion = 18040.333871 eV Total energy + Delta-G solvation = -3395.079178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.56818 -39.09757 -38.31054 -37.23846 -36.85578 -34.50084 -33.92883 -31.86955 -30.47074 -29.65737 -26.78441 -24.95695 -24.17890 -23.72161 -22.42877 -20.11702 -19.09067 -18.64971 -18.43094 -18.17578 -17.77783 -17.22927 -17.01498 -16.33826 -15.59121 -15.34905 -15.04345 -14.98201 -14.39260 -14.23544 -14.09054 -13.97546 -13.76071 -13.61975 -13.32115 -13.12440 -13.02883 -12.91370 -12.45127 -12.40479 -12.36278 -12.02884 -11.86519 -11.73915 -11.35308 -10.58555 -10.19904 -9.76824 -9.36803 -8.19413 -6.31524 -0.61857 -0.30754 -0.17457 1.31841 1.41085 1.44791 1.51753 1.66188 2.01007 2.39350 2.43482 2.82535 3.11632 3.18481 3.45690 3.61362 3.94924 4.08333 4.09662 4.13233 4.29512 4.52625 4.73316 4.75394 4.83070 4.84858 4.93621 4.99336 5.09437 5.19740 5.30080 5.39048 5.45588 5.69892 5.89904 5.97306 6.10024 6.76448 7.37348 8.88223 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.004862 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.886091 B = 5757.857203 C = 6497.605182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.994 5.994 3 C 0.269 3.731 4 C -0.549 4.549 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.925 5.925 8 Si 0.957 3.043 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.277 1.277 12 S 2.699 3.301 13 O -0.988 6.988 14 O -0.980 6.980 15 C -0.689 4.689 16 C -0.017 4.017 17 C -0.114 4.114 18 C 0.079 3.921 19 O -0.195 6.195 20 C 0.025 3.975 21 C -0.223 4.223 22 C -0.176 4.176 23 C 0.018 3.982 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.029 0.971 28 H 0.017 0.983 29 H 0.268 0.732 30 H 0.173 0.827 31 H 0.178 0.822 32 H 0.263 0.737 33 H 0.179 0.821 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -11.804 14.159 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.833 5.833 3 C 0.145 3.855 4 C -0.589 4.589 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.565 5.565 8 Si 0.781 3.219 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.202 1.202 12 S 2.791 3.209 13 O -0.979 6.979 14 O -0.970 6.970 15 C -0.778 4.778 16 C -0.036 4.036 17 C -0.132 4.132 18 C 0.030 3.970 19 O -0.095 6.095 20 C -0.039 4.039 21 C -0.242 4.242 22 C -0.178 4.178 23 C -0.002 4.002 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.190 0.810 31 H 0.195 0.805 32 H 0.279 0.721 33 H 0.196 0.804 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.290 -12.237 13.669 18.488 hybrid contribution 0.619 0.943 -0.402 1.198 sum -1.671 -11.294 13.267 17.503 Atomic orbital electron populations 1.21677 0.77506 1.04172 1.02755 1.57188 1.15874 1.21074 1.89207 1.18683 0.90523 0.80077 0.96196 1.21802 1.36367 1.06675 0.94016 0.92643 1.25742 0.94724 0.96697 1.01480 1.70003 1.37839 1.15765 1.32913 0.85633 0.78872 0.77540 0.79842 1.18720 1.20192 1.20217 1.01436 0.72625 0.72307 0.74492 1.93538 1.42279 1.84763 1.77282 1.93469 1.66314 1.59892 1.77338 1.30606 1.04894 1.15462 1.26803 1.20948 0.97307 0.91959 0.93413 1.20371 0.95811 1.03607 0.93449 1.20140 0.96243 0.97144 0.83446 1.84059 1.34719 1.62947 1.27792 1.24954 0.84011 0.93505 1.01387 1.22953 1.01491 1.07342 0.92393 1.20402 0.98292 1.03621 0.95439 1.20164 0.94408 0.92957 0.92636 0.90925 0.90677 0.89818 0.95260 0.96461 0.92347 0.81010 0.80457 0.72149 0.80397 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.75 10.68 127.77 1.36 4.11 16 2 N -0.99 -41.61 3.17 -543.23 -1.72 -43.33 16 3 C 0.27 13.79 5.08 85.63 0.43 14.22 16 4 C -0.55 -31.21 9.38 25.60 0.24 -30.97 16 5 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.74 5.46 84.65 0.46 1.20 16 7 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 8 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 9 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 S 2.70 109.64 5.64 -56.49 -0.32 109.32 16 13 O -0.99 -48.73 16.22 -128.00 -2.08 -50.80 16 14 O -0.98 -39.16 15.86 -128.00 -2.03 -41.19 16 15 C -0.69 -23.37 5.94 22.04 0.13 -23.24 16 16 C -0.02 -0.46 9.49 22.30 0.21 -0.25 16 17 C -0.11 -2.61 10.07 22.34 0.23 -2.38 16 18 C 0.08 2.05 7.42 22.99 0.17 2.22 16 19 O -0.19 -4.15 10.58 -8.93 -0.09 -4.24 16 20 C 0.02 0.39 11.96 66.85 0.80 1.19 16 21 C -0.22 -4.87 11.14 23.54 0.26 -4.60 16 22 C -0.18 -5.19 6.40 -20.21 -0.13 -5.32 16 23 C 0.02 0.62 9.51 22.20 0.21 0.83 16 24 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 26 H 0.08 2.48 7.02 -2.39 -0.02 2.46 16 27 H 0.03 1.53 8.11 -2.39 -0.02 1.51 16 28 H 0.02 0.95 7.61 -2.39 -0.02 0.94 16 29 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.17 3.72 7.59 -2.91 -0.02 3.70 16 31 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.26 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.18 3.16 8.06 -2.91 -0.02 3.13 16 34 H 0.13 4.82 7.58 -2.91 -0.02 4.80 16 Total: -1.00 -75.41 312.54 1.57 -73.83 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.12 Total: 6.94 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 4.38 Total: -42.98 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -1.44 Total: -97.50 kcal Atomic # 8 Polarization: -92.03 SS G_CDS: -4.20 Total: -96.23 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 109.64 SS G_CDS: -0.32 Total: 109.32 kcal Total: -75.41 1.57 -73.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198818468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.937 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds