Wall clock time and date at job start Tue Mar 31 2020 06:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30947 * 1 3 3 Si 1.86809 * 119.99726 * 2 1 4 4 H 1.48506 * 109.46621 * 272.68006 * 3 2 1 5 5 H 1.48498 * 109.46732 * 32.67351 * 3 2 1 6 6 H 1.48493 * 109.47069 * 152.68029 * 3 2 1 7 7 C 1.39810 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00091 * 346.54638 * 7 2 1 9 9 C 1.40983 * 120.00155 * 166.55388 * 7 2 1 10 10 C 1.40747 * 120.31125 * 328.84108 * 9 7 2 11 11 C 1.36395 * 119.95648 * 180.02562 * 10 9 7 12 12 C 1.38980 * 120.62941 * 359.97438 * 11 10 9 13 13 C 1.38035 * 120.63902 * 359.74434 * 12 11 10 14 14 C 1.38930 * 120.01578 * 0.51255 * 13 12 11 15 15 N 1.38401 * 120.30493 * 179.77375 * 14 13 12 16 16 C 1.40154 * 120.00433 * 6.57262 * 15 14 13 17 17 C 1.32494 * 122.65604 * 248.18516 * 16 15 14 18 18 S 1.75276 * 111.36453 * 179.76397 * 17 16 15 19 19 C 1.75890 * 92.29251 * 0.33748 * 18 17 16 20 20 C 1.39873 * 130.46566 * 179.97438 * 19 18 17 21 21 C 1.37482 * 120.19325 * 179.67481 * 20 19 18 22 22 C 1.38841 * 120.17473 * 0.02562 * 21 20 19 23 23 C 1.36129 * 120.56817 * 359.97438 * 22 21 20 24 24 C 1.39712 * 109.80563 * 359.66925 * 19 18 17 25 25 H 0.96998 * 120.00219 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.02452 * 0.04056 * 10 9 7 27 27 H 1.07996 * 119.68754 * 179.97438 * 11 10 9 28 28 H 1.07996 * 119.68054 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.98749 * 180.26020 * 13 12 11 30 30 H 0.97002 * 120.00111 * 186.57712 * 15 14 13 31 31 H 1.07996 * 124.32240 * 0.05731 * 17 16 15 32 32 H 1.08009 * 119.90703 * 359.67317 * 20 19 18 33 33 H 1.07991 * 119.91694 * 180.02562 * 21 20 19 34 34 H 1.07997 * 119.71998 * 179.97438 * 22 21 20 35 35 H 1.08005 * 119.76666 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6179 0.0000 4 1 2.4342 2.0792 -1.3986 5 1 1.4702 2.6357 0.7558 6 1 3.5681 1.4246 0.6425 7 6 2.0086 -1.2107 0.0005 8 1 1.4909 -2.1332 0.2186 9 6 3.3894 -1.2276 -0.2834 10 6 3.9462 -0.2768 -1.1592 11 6 5.2830 -0.3001 -1.4291 12 6 6.1065 -1.2559 -0.8464 13 6 5.5882 -2.1966 0.0207 14 6 4.2295 -2.2009 0.3103 15 7 3.7027 -3.1442 1.1752 16 6 4.5561 -4.0125 1.8695 17 6 4.6044 -5.3139 1.6259 18 16 5.7749 -6.1135 2.6567 19 6 6.2050 -4.6072 3.4565 20 6 7.1274 -4.3522 4.4766 21 6 7.3016 -3.0722 4.9472 22 6 6.5623 -2.0255 4.4128 23 6 5.6594 -2.2521 3.4195 24 6 5.4605 -3.5553 2.9169 25 1 -0.4850 0.8400 -0.0004 26 1 3.3155 0.4708 -1.6170 27 1 5.7055 0.4313 -2.1022 28 1 7.1628 -1.2605 -1.0713 29 1 6.2386 -2.9321 0.4709 30 1 2.7427 -3.2046 1.3009 31 1 4.0029 -5.8171 0.8834 32 1 7.7046 -5.1632 4.8958 33 1 8.0153 -2.8803 5.7346 34 1 6.7047 -1.0230 4.7882 35 1 5.0915 -1.4282 3.0129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202965863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:39 Heat of formation + Delta-G solvation = 71.225676 kcal Electronic energy + Delta-G solvation = -20402.853483 eV Core-core repulsion = 17456.558744 eV Total energy + Delta-G solvation = -2946.294739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.69251 -38.18697 -36.01239 -33.55458 -32.73621 -30.81090 -30.34784 -29.27963 -27.67467 -24.97688 -23.35870 -22.55730 -21.68873 -20.57360 -19.40514 -17.95151 -17.38911 -16.62477 -16.12330 -15.34178 -15.19267 -14.90895 -14.41530 -13.91408 -13.66084 -13.57330 -13.29988 -12.96265 -12.65253 -12.40766 -12.16234 -11.86601 -11.61959 -11.33533 -11.08713 -10.95200 -10.80404 -10.58689 -10.39243 -9.81954 -9.77029 -9.54338 -9.22286 -9.12159 -8.39168 -7.65649 -7.52619 -6.88463 -6.61605 -4.35675 0.88540 1.36933 1.67943 2.11586 2.38871 2.62730 2.79422 3.13045 3.24032 3.33426 3.86229 4.00561 4.29582 4.57381 4.78156 4.97022 5.06289 5.35646 5.40780 5.54855 5.67259 5.83880 6.01651 6.10156 6.13496 6.19440 6.28585 6.38773 6.53289 6.61542 6.69993 6.80962 6.98199 7.09581 7.21232 7.37484 7.60796 7.85383 7.99017 8.14134 8.36634 8.59351 8.73402 8.84144 10.15093 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.005133 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.987462 B = 5453.485075 C = 5629.011636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.245 1.245 7 C -0.452 4.452 8 H 0.086 0.914 9 C 0.058 3.942 10 C -0.211 4.211 11 C -0.117 4.117 12 C -0.197 4.197 13 C -0.146 4.146 14 C 0.114 3.886 15 N -0.680 5.680 16 C 0.184 3.816 17 C -0.231 4.231 18 S 0.076 5.924 19 C -0.134 4.134 20 C -0.093 4.093 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.055 4.055 24 C -0.077 4.077 25 H 0.283 0.717 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.411 0.589 31 H 0.167 0.833 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.477 -6.183 7.587 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.133 4.133 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.168 1.168 7 C -0.482 4.482 8 H 0.104 0.896 9 C 0.053 3.947 10 C -0.232 4.232 11 C -0.136 4.136 12 C -0.217 4.217 13 C -0.169 4.169 14 C 0.016 3.984 15 N -0.311 5.311 16 C 0.078 3.922 17 C -0.367 4.367 18 S 0.337 5.663 19 C -0.249 4.249 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.148 4.148 23 C -0.075 4.075 24 C -0.087 4.087 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.250 0.750 31 H 0.184 0.816 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.700 -7.655 7.687 15.237 hybrid contribution -0.659 2.181 -0.232 2.290 sum 10.041 -5.474 7.455 13.651 Atomic orbital electron populations 1.69705 1.07826 1.29912 1.37297 1.26012 0.94734 1.01335 0.91210 0.86311 0.80891 0.79962 0.78825 1.19882 1.22326 1.16820 1.19039 0.91418 0.95375 1.42392 0.89615 1.17369 0.93159 0.91529 0.92618 1.20559 0.95122 1.03832 1.03638 1.20225 0.94007 0.98722 1.00678 1.20170 0.97704 0.99677 1.04176 1.20215 0.93107 1.01132 1.02453 1.17703 0.91855 0.94086 0.94776 1.41204 1.07135 1.36228 1.46506 1.17252 0.93714 0.89014 0.92231 1.25078 1.06751 0.97986 1.06860 1.83784 1.39263 1.07809 1.35444 1.22507 1.02748 0.97186 1.02455 1.20389 0.97791 0.97315 0.96069 1.21002 0.99426 0.92234 0.99734 1.20711 0.97117 0.99327 0.97604 1.20852 0.96632 0.95260 0.94733 1.19509 0.98226 0.93963 0.96987 0.90696 0.88098 0.89109 0.88950 0.88814 0.74972 0.81569 0.85876 0.85596 0.85685 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.76 13.93 55.54 0.77 -20.98 16 2 C 0.08 2.16 5.45 -17.34 -0.09 2.07 16 3 Si 0.91 20.85 24.42 -169.99 -4.15 16.69 16 4 H -0.27 -6.09 6.65 56.52 0.38 -5.71 16 5 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.24 -5.71 6.74 56.52 0.38 -5.33 16 7 C -0.45 -11.70 8.97 -37.95 -0.34 -12.04 16 8 H 0.09 2.28 6.99 -52.48 -0.37 1.91 16 9 C 0.06 1.43 5.13 -106.62 -0.55 0.88 16 10 C -0.21 -5.04 6.98 -39.30 -0.27 -5.32 16 11 C -0.12 -2.54 9.96 -39.97 -0.40 -2.94 16 12 C -0.20 -4.15 10.03 -39.38 -0.40 -4.54 16 13 C -0.15 -3.13 9.10 -39.40 -0.36 -3.49 16 14 C 0.11 2.54 6.64 -83.35 -0.55 1.98 16 15 N -0.68 -13.55 5.40 -7.64 -0.04 -13.59 16 16 C 0.18 3.25 4.86 -82.98 -0.40 2.85 16 17 C -0.23 -3.58 10.99 28.82 0.32 -3.26 16 18 S 0.08 1.01 23.23 -107.50 -2.50 -1.48 16 19 C -0.13 -1.98 6.48 -38.42 -0.25 -2.22 16 20 C -0.09 -1.16 10.07 -39.25 -0.40 -1.55 16 21 C -0.10 -1.21 10.03 -39.63 -0.40 -1.61 16 22 C -0.13 -1.70 9.95 -40.12 -0.40 -2.10 16 23 C -0.06 -0.90 10.01 -39.26 -0.39 -1.30 16 24 C -0.08 -1.30 5.21 -105.27 -0.55 -1.85 16 25 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 26 H 0.10 2.42 4.48 -52.49 -0.24 2.18 16 27 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.09 1.93 6.57 -52.49 -0.34 1.59 16 30 H 0.41 8.23 7.14 -40.82 -0.29 7.94 16 31 H 0.17 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.13 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 307.24 15.07 4.63 4.63 Total: -1.00 -27.24 307.24 -10.10 -37.34 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -3.38 Total: 11.82 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -5.43 Total: -34.43 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.73 Total: -34.57 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.15 Total: 16.69 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.50 Total: -1.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.24 -10.10 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202965863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.565 kcal (2) G-P(sol) polarization free energy of solvation -27.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds