Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30947 * 1 3 3 Si 1.86809 * 119.99726 * 2 1 4 4 H 1.48506 * 109.46621 * 272.68006 * 3 2 1 5 5 H 1.48498 * 109.46732 * 32.67351 * 3 2 1 6 6 H 1.48493 * 109.47069 * 152.68029 * 3 2 1 7 7 C 1.39810 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00091 * 346.54638 * 7 2 1 9 9 C 1.40983 * 120.00155 * 166.55388 * 7 2 1 10 10 C 1.40747 * 120.31125 * 328.84108 * 9 7 2 11 11 C 1.36395 * 119.95648 * 180.02562 * 10 9 7 12 12 C 1.38980 * 120.62941 * 359.97438 * 11 10 9 13 13 C 1.38035 * 120.63902 * 359.74434 * 12 11 10 14 14 C 1.38930 * 120.01578 * 0.51255 * 13 12 11 15 15 N 1.38401 * 120.30493 * 179.77375 * 14 13 12 16 16 C 1.40154 * 120.00433 * 6.57262 * 15 14 13 17 17 C 1.32494 * 122.65604 * 248.18516 * 16 15 14 18 18 S 1.75276 * 111.36453 * 179.76397 * 17 16 15 19 19 C 1.75890 * 92.29251 * 0.33748 * 18 17 16 20 20 C 1.39873 * 130.46566 * 179.97438 * 19 18 17 21 21 C 1.37482 * 120.19325 * 179.67481 * 20 19 18 22 22 C 1.38841 * 120.17473 * 0.02562 * 21 20 19 23 23 C 1.36129 * 120.56817 * 359.97438 * 22 21 20 24 24 C 1.39712 * 109.80563 * 359.66925 * 19 18 17 25 25 H 0.96998 * 120.00219 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.02452 * 0.04056 * 10 9 7 27 27 H 1.07996 * 119.68754 * 179.97438 * 11 10 9 28 28 H 1.07996 * 119.68054 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.98749 * 180.26020 * 13 12 11 30 30 H 0.97002 * 120.00111 * 186.57712 * 15 14 13 31 31 H 1.07996 * 124.32240 * 0.05731 * 17 16 15 32 32 H 1.08009 * 119.90703 * 359.67317 * 20 19 18 33 33 H 1.07991 * 119.91694 * 180.02562 * 21 20 19 34 34 H 1.07997 * 119.71998 * 179.97438 * 22 21 20 35 35 H 1.08005 * 119.76666 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6179 0.0000 4 1 2.4342 2.0792 -1.3986 5 1 1.4702 2.6357 0.7558 6 1 3.5681 1.4246 0.6425 7 6 2.0086 -1.2107 0.0005 8 1 1.4909 -2.1332 0.2186 9 6 3.3894 -1.2276 -0.2834 10 6 3.9462 -0.2768 -1.1592 11 6 5.2830 -0.3001 -1.4291 12 6 6.1065 -1.2559 -0.8464 13 6 5.5882 -2.1966 0.0207 14 6 4.2295 -2.2009 0.3103 15 7 3.7027 -3.1442 1.1752 16 6 4.5561 -4.0125 1.8695 17 6 4.6044 -5.3139 1.6259 18 16 5.7749 -6.1135 2.6567 19 6 6.2050 -4.6072 3.4565 20 6 7.1274 -4.3522 4.4766 21 6 7.3016 -3.0722 4.9472 22 6 6.5623 -2.0255 4.4128 23 6 5.6594 -2.2521 3.4195 24 6 5.4605 -3.5553 2.9169 25 1 -0.4850 0.8400 -0.0004 26 1 3.3155 0.4708 -1.6170 27 1 5.7055 0.4313 -2.1022 28 1 7.1628 -1.2605 -1.0713 29 1 6.2386 -2.9321 0.4709 30 1 2.7427 -3.2046 1.3009 31 1 4.0029 -5.8171 0.8834 32 1 7.7046 -5.1632 4.8958 33 1 8.0153 -2.8803 5.7346 34 1 6.7047 -1.0230 4.7882 35 1 5.0915 -1.4282 3.0129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202965863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = 58.029077 kcal Electronic energy + Delta-G solvation = -20403.425731 eV Core-core repulsion = 17456.558744 eV Total energy + Delta-G solvation = -2946.866986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96651 -39.72687 -37.39186 -35.43577 -34.15592 -32.27055 -31.78631 -30.57316 -29.21616 -26.82010 -24.60961 -23.67728 -23.22314 -22.27793 -20.77925 -19.29340 -19.08231 -18.29769 -17.44598 -16.77667 -16.44973 -16.21740 -15.75984 -15.59903 -15.08181 -14.90895 -14.78750 -14.49519 -14.22420 -13.98971 -13.60557 -13.44816 -12.92900 -12.76238 -12.64399 -12.38600 -12.26490 -12.08764 -11.66851 -11.61448 -11.57131 -11.07774 -10.95552 -10.49578 -9.52387 -9.45262 -8.80633 -8.72199 -8.22251 -6.28897 -0.25533 0.29133 0.57107 0.81538 0.90140 0.95242 1.26567 1.28678 1.43442 1.49433 2.14578 2.67852 2.76829 2.84966 3.53177 3.65232 3.91907 4.10653 4.27013 4.39173 4.43064 4.46637 4.52329 4.68081 4.76981 4.84933 4.98663 5.02005 5.08457 5.22955 5.36234 5.40530 5.47004 5.58612 5.63880 5.80619 5.95250 6.05878 6.16780 6.36498 6.52812 6.82901 7.00315 7.01670 8.28202 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.005133 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.987462 B = 5453.485075 C = 5629.011636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.046 3.954 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.473 4.473 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.218 4.218 11 C -0.131 4.131 12 C -0.178 4.178 13 C -0.154 4.154 14 C 0.124 3.876 15 N -0.682 5.682 16 C 0.150 3.850 17 C -0.232 4.232 18 S 0.135 5.865 19 C -0.152 4.152 20 C -0.089 4.089 21 C -0.093 4.093 22 C -0.122 4.122 23 C -0.087 4.087 24 C -0.101 4.101 25 H 0.288 0.712 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.404 0.596 31 H 0.173 0.827 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.145 0.855 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.270 -6.932 8.808 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.504 4.504 8 H 0.078 0.922 9 C 0.021 3.979 10 C -0.239 4.239 11 C -0.151 4.151 12 C -0.198 4.198 13 C -0.177 4.177 14 C 0.024 3.976 15 N -0.312 5.312 16 C 0.044 3.956 17 C -0.368 4.368 18 S 0.397 5.603 19 C -0.267 4.267 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.142 4.142 23 C -0.107 4.107 24 C -0.111 4.111 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.242 0.758 31 H 0.191 0.809 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.163 0.837 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.514 -8.441 8.922 19.014 hybrid contribution -1.596 2.202 -0.528 2.770 sum 12.918 -6.239 8.394 16.621 Atomic orbital electron populations 1.69746 1.08781 1.30728 1.40107 1.26599 0.95274 1.03606 0.91084 0.85544 0.79301 0.77254 0.79130 1.18867 1.21409 1.17850 1.19003 0.92381 0.94763 1.44264 0.92221 1.17516 0.92939 0.93265 0.94137 1.20707 0.96286 1.03441 1.03429 1.20536 0.93193 0.99852 1.01482 1.20632 0.99269 0.97949 1.01924 1.20382 0.92672 1.01799 1.02889 1.17894 0.92235 0.93340 0.94095 1.41206 1.07226 1.36291 1.46428 1.17530 0.95016 0.89446 0.93597 1.25350 1.06791 0.97706 1.06935 1.83518 1.37191 1.06026 1.33565 1.22850 1.03255 0.97262 1.03344 1.20871 0.96785 0.98745 0.94759 1.21461 0.98951 0.91219 0.99711 1.21022 0.95868 1.01130 0.96193 1.20767 0.98491 0.94490 0.96940 1.19510 0.99114 0.94889 0.97558 0.90203 0.88611 0.86083 0.85644 0.87823 0.75849 0.80933 0.82558 0.81475 0.83684 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.25 13.93 21.81 0.30 -47.94 16 2 C 0.05 2.50 5.45 85.20 0.46 2.96 16 3 Si 0.96 44.17 24.42 68.60 1.68 45.84 16 4 H -0.26 -11.51 6.65 99.48 0.66 -10.85 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.25 -11.92 6.74 99.48 0.67 -11.25 16 7 C -0.47 -26.02 8.97 23.32 0.21 -25.81 16 8 H 0.06 3.46 6.99 -2.91 -0.02 3.44 16 9 C 0.03 1.33 5.13 -21.16 -0.11 1.22 16 10 C -0.22 -10.46 6.98 22.45 0.16 -10.30 16 11 C -0.13 -5.48 9.96 22.02 0.22 -5.26 16 12 C -0.18 -7.07 10.03 22.40 0.22 -6.84 16 13 C -0.15 -6.48 9.10 22.39 0.20 -6.28 16 14 C 0.12 5.67 6.64 39.10 0.26 5.93 16 15 N -0.68 -28.54 5.40 -178.10 -0.96 -29.50 16 16 C 0.15 5.36 4.86 38.61 0.19 5.55 16 17 C -0.23 -7.06 10.99 66.69 0.73 -6.33 16 18 S 0.13 3.27 23.23 -56.49 -1.31 1.96 16 19 C -0.15 -4.12 6.48 23.02 0.15 -3.98 16 20 C -0.09 -1.86 10.07 22.49 0.23 -1.63 16 21 C -0.09 -1.78 10.03 22.24 0.22 -1.56 16 22 C -0.12 -2.99 9.95 21.92 0.22 -2.78 16 23 C -0.09 -2.85 10.01 22.48 0.23 -2.62 16 24 C -0.10 -3.37 5.21 -20.29 -0.11 -3.48 16 25 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 26 H 0.10 4.62 4.48 -2.91 -0.01 4.60 16 27 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 28 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 29 H 0.10 4.15 6.57 -2.91 -0.02 4.13 16 30 H 0.40 17.55 7.14 -92.71 -0.66 16.89 16 31 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.17 1.85 8.06 -2.92 -0.02 1.83 16 34 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.10 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -61.62 307.24 3.58 -58.04 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.39 Total: 32.79 kcal Atomic # 6 Polarization: -64.67 SS G_CDS: 3.49 Total: -61.19 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -0.66 Total: -77.44 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.68 Total: 45.84 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.31 Total: 1.96 kcal Total: -61.62 3.58 -58.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202965863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.066 kcal (2) G-P(sol) polarization free energy of solvation -61.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds