Wall clock time and date at job start Tue Mar 31 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30969 * 1 3 3 Si 1.86799 * 119.99702 * 2 1 4 4 H 1.48498 * 109.47506 * 274.98703 * 3 2 1 5 5 H 1.48499 * 109.47422 * 34.99249 * 3 2 1 6 6 H 1.48511 * 109.46888 * 154.98789 * 3 2 1 7 7 C 1.39744 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00014 * 146.68323 * 7 2 1 9 9 C 1.41083 * 120.00049 * 326.67507 * 7 2 1 10 10 C 1.40922 * 120.14278 * 157.57755 * 9 7 2 11 11 C 1.36265 * 119.84341 * 180.02562 * 10 9 7 12 12 C 1.39694 * 120.15178 * 0.02562 * 11 10 9 13 13 N 1.38547 * 119.85022 * 179.97438 * 12 11 10 14 14 C 1.40167 * 119.99412 * 187.91231 * 13 12 11 15 15 C 1.32486 * 122.65816 * 254.24535 * 14 13 12 16 16 S 1.75277 * 111.36969 * 179.97438 * 15 14 13 17 17 C 1.75892 * 92.28722 * 0.02562 * 16 15 14 18 18 C 1.39884 * 130.46441 * 179.97438 * 17 16 15 19 19 C 1.37478 * 120.18771 * 179.97438 * 18 17 16 20 20 C 1.38836 * 120.17778 * 0.02562 * 19 18 17 21 21 C 1.36120 * 120.57137 * 0.02562 * 20 19 18 22 22 C 1.39708 * 109.80908 * 359.74681 * 17 16 15 23 23 C 1.39684 * 120.29291 * 0.23934 * 12 11 10 24 24 C 1.36262 * 120.15113 * 359.47539 * 23 12 11 25 25 H 0.97000 * 120.00188 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.07668 * 0.04088 * 10 9 7 27 27 H 1.08000 * 119.92560 * 180.02562 * 11 10 9 28 28 H 0.97002 * 119.99870 * 8.18884 * 13 12 11 29 29 H 1.08005 * 124.31423 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.90476 * 359.97438 * 18 17 16 31 31 H 1.08000 * 119.90669 * 179.97438 * 19 18 17 32 32 H 1.08005 * 119.71063 * 179.97438 * 20 19 18 33 33 H 1.08006 * 119.76779 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.92600 * 179.72535 * 23 12 11 35 35 H 1.08004 * 120.07999 * 180.25865 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2436 1.6178 0.0000 4 1 2.3857 2.1074 -1.3947 5 1 1.4978 2.6200 0.8029 6 1 3.5900 1.4121 0.5920 7 6 2.0084 -1.2102 -0.0005 8 1 2.9553 -1.2869 -0.5143 9 6 1.4770 -2.3319 0.6702 10 6 1.8847 -3.6314 0.3084 11 6 1.3671 -4.7105 0.9600 12 6 0.4340 -4.5307 1.9840 13 7 -0.0886 -5.6323 2.6419 14 6 -1.1427 -5.4702 3.5515 15 6 -0.9731 -5.5466 4.8633 16 16 -2.4831 -5.2982 5.7180 17 6 -3.3776 -5.0828 4.2189 18 6 -4.7354 -4.8263 4.0008 19 6 -5.2167 -4.6936 2.7199 20 6 -4.3580 -4.8139 1.6357 21 6 -3.0336 -5.0644 1.8259 22 6 -2.5109 -5.1991 3.1294 23 6 0.0216 -3.2456 2.3437 24 6 0.5356 -2.1577 1.7042 25 1 -0.4850 0.8400 0.0004 26 1 2.6058 -3.7718 -0.4831 27 1 1.6789 -5.7070 0.6841 28 1 0.2776 -6.5151 2.4761 29 1 -0.0253 -5.7376 5.3446 30 1 -5.4073 -4.7323 4.8411 31 1 -6.2659 -4.4961 2.5568 32 1 -4.7443 -4.7087 0.6326 33 1 -2.3773 -5.1559 0.9730 34 1 -0.7034 -3.1137 3.1333 35 1 0.2190 -1.1643 1.9862 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202966679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:56 Heat of formation + Delta-G solvation = 70.050189 kcal Electronic energy + Delta-G solvation = -19984.370517 eV Core-core repulsion = 17038.024805 eV Total energy + Delta-G solvation = -2946.345712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.61479 -37.93722 -36.04121 -33.77590 -32.23437 -30.74041 -29.50846 -29.28986 -28.18036 -24.62551 -23.16547 -22.50620 -21.29415 -20.86099 -19.27816 -17.93829 -17.28713 -16.35044 -16.02946 -15.32145 -15.13142 -15.02617 -14.29054 -13.90786 -13.61003 -13.44131 -12.98123 -12.64488 -12.49235 -12.08094 -12.05435 -11.86180 -11.51875 -11.29159 -11.08667 -10.97838 -10.88806 -10.57198 -10.48590 -9.86907 -9.50944 -9.43761 -9.22576 -8.65834 -8.37422 -7.55926 -7.49108 -6.91675 -6.54197 -4.07205 0.89960 1.39684 1.67911 2.11303 2.42564 2.85702 3.05041 3.11414 3.15064 3.31419 3.88602 3.98512 4.26518 4.59547 4.79890 4.99383 5.09155 5.38733 5.56507 5.68206 5.72910 5.84801 6.14261 6.20333 6.21233 6.26742 6.35340 6.54073 6.71250 6.89204 6.92378 7.00751 7.11717 7.24417 7.50408 7.59494 7.73217 8.08701 8.21529 8.42764 8.57964 8.68757 8.95695 9.07343 10.16648 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.004339 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.409147 B = 6451.721542 C = 6905.374110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.090 3.910 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.476 4.476 8 H 0.078 0.922 9 C 0.092 3.908 10 C -0.200 4.200 11 C -0.137 4.137 12 C 0.063 3.937 13 N -0.698 5.698 14 C 0.187 3.813 15 C -0.226 4.226 16 S 0.074 5.926 17 C -0.135 4.135 18 C -0.093 4.093 19 C -0.103 4.103 20 C -0.125 4.125 21 C -0.054 4.054 22 C -0.077 4.077 23 C -0.133 4.133 24 C -0.147 4.147 25 H 0.280 0.720 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.396 0.604 29 H 0.166 0.834 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 -8.486 6.979 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.130 4.130 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.505 4.505 8 H 0.096 0.904 9 C 0.089 3.911 10 C -0.220 4.220 11 C -0.158 4.158 12 C -0.031 4.031 13 N -0.331 5.331 14 C 0.081 3.919 15 C -0.362 4.362 16 S 0.336 5.664 17 C -0.250 4.250 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.146 4.146 21 C -0.074 4.074 22 C -0.087 4.087 23 C -0.154 4.154 24 C -0.166 4.166 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.231 0.769 29 H 0.183 0.817 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.489 -8.224 8.556 14.591 hybrid contribution 0.860 0.554 -1.534 1.844 sum -7.629 -7.671 7.022 12.897 Atomic orbital electron populations 1.70007 1.07939 1.29464 1.32761 1.25812 0.94244 1.01153 0.91813 0.86631 0.81585 0.81489 0.79032 1.19659 1.20064 1.18280 1.19292 1.06040 0.94148 1.30998 0.90442 1.17463 0.91042 0.91744 0.90900 1.20454 1.06313 0.92312 1.02928 1.19828 1.00862 0.97283 0.97860 1.17168 1.01470 0.85862 0.98641 1.40986 1.36548 1.07872 1.47667 1.17140 0.86770 0.99492 0.88461 1.25163 1.01786 1.12460 0.96777 1.83801 0.98808 1.77435 1.06399 1.22497 0.97772 1.07940 0.96804 1.20395 0.92070 1.01621 0.97451 1.21009 0.99693 0.99651 0.92019 1.20722 0.93523 1.01109 0.99206 1.20785 0.95188 0.95936 0.95495 1.19562 0.92656 1.02860 0.93635 1.20026 1.02245 0.91541 1.01613 1.20623 1.01576 0.96640 0.97801 0.90937 0.88894 0.89410 0.76876 0.81702 0.85882 0.85555 0.85625 0.85380 0.89647 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.36 11.87 55.54 0.66 -19.70 16 2 C 0.09 2.28 4.73 -17.36 -0.08 2.20 16 3 Si 0.89 18.73 29.66 -169.99 -5.04 13.69 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.48 -12.74 8.92 -37.94 -0.34 -13.08 16 8 H 0.08 2.01 8.02 -52.49 -0.42 1.59 16 9 C 0.09 2.44 5.57 -106.79 -0.59 1.85 16 10 C -0.20 -4.87 9.74 -39.28 -0.38 -5.25 16 11 C -0.14 -2.99 9.83 -39.75 -0.39 -3.38 16 12 C 0.06 1.36 6.63 -83.74 -0.56 0.81 16 13 N -0.70 -12.39 5.48 -7.90 -0.04 -12.43 16 14 C 0.19 3.18 4.60 -82.97 -0.38 2.80 16 15 C -0.23 -3.42 10.98 28.82 0.32 -3.10 16 16 S 0.07 1.01 23.23 -107.50 -2.50 -1.49 16 17 C -0.13 -2.04 6.48 -38.42 -0.25 -2.29 16 18 C -0.09 -1.21 10.07 -39.24 -0.40 -1.60 16 19 C -0.10 -1.27 10.03 -39.64 -0.40 -1.67 16 20 C -0.13 -1.74 9.95 -40.12 -0.40 -2.14 16 21 C -0.05 -0.90 10.01 -39.26 -0.39 -1.29 16 22 C -0.08 -1.31 5.73 -105.28 -0.60 -1.91 16 23 C -0.13 -3.16 9.17 -39.75 -0.36 -3.53 16 24 C -0.15 -3.84 8.74 -39.28 -0.34 -4.18 16 25 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 26 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 27 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.40 6.08 8.83 -40.82 -0.36 5.72 16 29 H 0.17 2.24 8.06 -52.48 -0.42 1.81 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 34 H 0.09 2.00 6.80 -52.49 -0.36 1.65 16 35 H 0.10 2.80 6.58 -52.48 -0.35 2.46 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -28.24 317.67 -11.27 -39.51 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -3.58 Total: 11.42 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: -5.55 Total: -35.77 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.62 Total: -32.13 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.04 Total: 13.69 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.50 Total: -1.49 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.24 -11.27 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202966679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.556 kcal (2) G-P(sol) polarization free energy of solvation -28.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds