Wall clock time and date at job start Tue Mar 31 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30969 * 1 3 3 Si 1.86799 * 119.99702 * 2 1 4 4 H 1.48498 * 109.47506 * 274.98703 * 3 2 1 5 5 H 1.48499 * 109.47422 * 34.99249 * 3 2 1 6 6 H 1.48511 * 109.46888 * 154.98789 * 3 2 1 7 7 C 1.39744 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00014 * 146.68323 * 7 2 1 9 9 C 1.41083 * 120.00049 * 326.67507 * 7 2 1 10 10 C 1.40922 * 120.14278 * 157.57755 * 9 7 2 11 11 C 1.36265 * 119.84341 * 180.02562 * 10 9 7 12 12 C 1.39694 * 120.15178 * 0.02562 * 11 10 9 13 13 N 1.38547 * 119.85022 * 179.97438 * 12 11 10 14 14 C 1.40167 * 119.99412 * 187.91231 * 13 12 11 15 15 C 1.32486 * 122.65816 * 254.24535 * 14 13 12 16 16 S 1.75277 * 111.36969 * 179.97438 * 15 14 13 17 17 C 1.75892 * 92.28722 * 0.02562 * 16 15 14 18 18 C 1.39884 * 130.46441 * 179.97438 * 17 16 15 19 19 C 1.37478 * 120.18771 * 179.97438 * 18 17 16 20 20 C 1.38836 * 120.17778 * 0.02562 * 19 18 17 21 21 C 1.36120 * 120.57137 * 0.02562 * 20 19 18 22 22 C 1.39708 * 109.80908 * 359.74681 * 17 16 15 23 23 C 1.39684 * 120.29291 * 0.23934 * 12 11 10 24 24 C 1.36262 * 120.15113 * 359.47539 * 23 12 11 25 25 H 0.97000 * 120.00188 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.07668 * 0.04088 * 10 9 7 27 27 H 1.08000 * 119.92560 * 180.02562 * 11 10 9 28 28 H 0.97002 * 119.99870 * 8.18884 * 13 12 11 29 29 H 1.08005 * 124.31423 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.90476 * 359.97438 * 18 17 16 31 31 H 1.08000 * 119.90669 * 179.97438 * 19 18 17 32 32 H 1.08005 * 119.71063 * 179.97438 * 20 19 18 33 33 H 1.08006 * 119.76779 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.92600 * 179.72535 * 23 12 11 35 35 H 1.08004 * 120.07999 * 180.25865 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2436 1.6178 0.0000 4 1 2.3857 2.1074 -1.3947 5 1 1.4978 2.6200 0.8029 6 1 3.5900 1.4121 0.5920 7 6 2.0084 -1.2102 -0.0005 8 1 2.9553 -1.2869 -0.5143 9 6 1.4770 -2.3319 0.6702 10 6 1.8847 -3.6314 0.3084 11 6 1.3671 -4.7105 0.9600 12 6 0.4340 -4.5307 1.9840 13 7 -0.0886 -5.6323 2.6419 14 6 -1.1427 -5.4702 3.5515 15 6 -0.9731 -5.5466 4.8633 16 16 -2.4831 -5.2982 5.7180 17 6 -3.3776 -5.0828 4.2189 18 6 -4.7354 -4.8263 4.0008 19 6 -5.2167 -4.6936 2.7199 20 6 -4.3580 -4.8139 1.6357 21 6 -3.0336 -5.0644 1.8259 22 6 -2.5109 -5.1991 3.1294 23 6 0.0216 -3.2456 2.3437 24 6 0.5356 -2.1577 1.7042 25 1 -0.4850 0.8400 0.0004 26 1 2.6058 -3.7718 -0.4831 27 1 1.6789 -5.7070 0.6841 28 1 0.2776 -6.5151 2.4761 29 1 -0.0253 -5.7376 5.3446 30 1 -5.4073 -4.7323 4.8411 31 1 -6.2659 -4.4961 2.5568 32 1 -4.7443 -4.7087 0.6326 33 1 -2.3773 -5.1559 0.9730 34 1 -0.7034 -3.1137 3.1333 35 1 0.2190 -1.1643 1.9862 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202966679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:55 Heat of formation + Delta-G solvation = 57.148692 kcal Electronic energy + Delta-G solvation = -19984.929968 eV Core-core repulsion = 17038.024805 eV Total energy + Delta-G solvation = -2946.905163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85910 -39.56755 -37.50696 -35.50062 -33.77990 -31.86582 -31.39851 -30.75835 -29.67972 -26.43092 -24.40209 -23.63682 -23.07414 -22.54335 -20.70308 -19.21435 -19.07161 -18.02766 -17.31235 -16.86104 -16.47049 -16.21463 -15.75625 -15.48709 -14.81482 -14.75140 -14.66854 -14.33421 -13.90312 -13.81287 -13.76132 -13.32133 -12.95214 -12.79763 -12.62039 -12.35729 -12.29653 -12.12645 -11.73853 -11.65102 -11.30937 -11.08947 -10.64531 -10.39842 -9.51258 -9.44673 -8.81979 -8.62878 -8.27053 -6.01864 -0.24737 0.28208 0.56732 0.93321 1.03551 1.12250 1.27013 1.38405 1.49351 1.59723 2.22939 2.68985 2.76285 2.89948 3.65091 3.78313 3.91784 4.09141 4.37296 4.39096 4.44479 4.46045 4.55172 4.75917 4.95255 5.00513 5.07024 5.09138 5.20682 5.27624 5.37682 5.44309 5.58496 5.65306 5.75479 5.86583 5.94175 6.13898 6.32822 6.60439 6.81542 7.00990 7.07172 7.20625 8.31750 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.004339 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.409147 B = 6451.721542 C = 6905.374110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.051 3.949 3 Si 0.963 3.037 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.057 3.943 10 C -0.207 4.207 11 C -0.140 4.140 12 C 0.091 3.909 13 N -0.688 5.688 14 C 0.154 3.846 15 C -0.223 4.223 16 S 0.124 5.876 17 C -0.157 4.157 18 C -0.092 4.092 19 C -0.098 4.098 20 C -0.126 4.126 21 C -0.086 4.086 22 C -0.102 4.102 23 C -0.141 4.141 24 C -0.166 4.166 25 H 0.287 0.713 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.408 0.592 29 H 0.180 0.820 30 H 0.154 0.846 31 H 0.165 0.835 32 H 0.144 0.856 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 -9.129 8.321 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.166 4.166 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.545 4.545 8 H 0.091 0.909 9 C 0.054 3.946 10 C -0.227 4.227 11 C -0.162 4.162 12 C -0.006 4.006 13 N -0.321 5.321 14 C 0.048 3.952 15 C -0.359 4.359 16 S 0.386 5.614 17 C -0.272 4.272 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.146 4.146 21 C -0.106 4.106 22 C -0.111 4.111 23 C -0.163 4.163 24 C -0.186 4.186 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.141 0.859 28 H 0.246 0.754 29 H 0.197 0.803 30 H 0.172 0.828 31 H 0.182 0.818 32 H 0.161 0.839 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.751 -8.912 9.922 16.521 hybrid contribution 1.097 0.549 -1.841 2.213 sum -8.654 -8.363 8.080 14.495 Atomic orbital electron populations 1.70035 1.09401 1.30707 1.33891 1.26601 0.94894 1.04260 0.90881 0.85507 0.79787 0.76847 0.79493 1.18464 1.19231 1.18383 1.19502 1.06469 0.95709 1.32852 0.90853 1.17753 0.92171 0.92934 0.91712 1.20685 1.06435 0.92295 1.03309 1.20128 1.00412 0.98306 0.97373 1.17213 0.99728 0.86271 0.97403 1.40838 1.36622 1.07324 1.47316 1.17343 0.86719 1.02215 0.88929 1.25454 1.03535 1.10317 0.96574 1.83584 0.96829 1.76287 1.04664 1.22864 0.98787 1.08409 0.97147 1.20859 0.91593 1.00122 0.98875 1.21448 1.01247 0.97958 0.91155 1.21039 0.92768 0.99839 1.00945 1.20774 0.96287 0.98621 0.94915 1.19660 0.92950 1.04164 0.94374 1.20004 1.02493 0.92046 1.01740 1.20517 1.02802 0.96403 0.98861 0.90249 0.88130 0.85909 0.75408 0.80305 0.82796 0.81759 0.83857 0.87739 0.89720 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.30 11.87 21.80 0.26 -44.04 16 2 C 0.05 2.64 4.73 85.19 0.40 3.05 16 3 Si 0.96 39.36 29.66 68.60 2.03 41.39 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.52 -28.81 8.92 23.33 0.21 -28.61 16 8 H 0.07 3.97 8.02 -2.91 -0.02 3.95 16 9 C 0.06 3.18 5.57 -21.27 -0.12 3.06 16 10 C -0.21 -10.27 9.74 22.47 0.22 -10.05 16 11 C -0.14 -6.08 9.83 22.16 0.22 -5.86 16 12 C 0.09 3.90 6.63 38.78 0.26 4.16 16 13 N -0.69 -23.94 5.48 -178.91 -0.98 -24.92 16 14 C 0.15 5.11 4.60 38.61 0.18 5.29 16 15 C -0.22 -6.39 10.98 66.69 0.73 -5.65 16 16 S 0.12 3.07 23.23 -56.49 -1.31 1.76 16 17 C -0.16 -4.47 6.48 23.02 0.15 -4.32 16 18 C -0.09 -2.13 10.07 22.49 0.23 -1.90 16 19 C -0.10 -2.12 10.03 22.23 0.22 -1.90 16 20 C -0.13 -3.35 9.95 21.92 0.22 -3.13 16 21 C -0.09 -2.87 10.01 22.48 0.23 -2.64 16 22 C -0.10 -3.40 5.73 -20.29 -0.12 -3.52 16 23 C -0.14 -6.89 9.17 22.16 0.20 -6.69 16 24 C -0.17 -9.09 8.74 22.47 0.20 -8.89 16 25 H 0.29 14.07 8.30 -92.71 -0.77 13.31 16 26 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 27 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 28 H 0.41 11.99 8.83 -92.71 -0.82 11.17 16 29 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 31 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.10 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.08 4.08 6.80 -2.91 -0.02 4.06 16 35 H 0.08 4.72 6.58 -2.91 -0.02 4.70 16 Total: -1.00 -63.67 317.67 3.73 -59.94 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.31 Total: 33.49 kcal Atomic # 6 Polarization: -71.04 SS G_CDS: 3.42 Total: -67.62 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -0.72 Total: -68.96 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -63.67 3.73 -59.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202966679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.089 kcal (2) G-P(sol) polarization free energy of solvation -63.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds