Wall clock time and date at job start Tue Mar 31 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86800 * 119.99611 * 2 1 4 4 H 1.48508 * 109.46896 * 240.00223 * 3 2 1 5 5 H 1.48502 * 109.47536 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47317 * 120.00447 * 3 2 1 7 7 C 1.39825 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00521 * 192.26165 * 7 2 1 9 9 C 1.41100 * 119.99846 * 12.26002 * 7 2 1 10 10 C 1.40907 * 120.15363 * 207.71188 * 9 7 2 11 11 C 1.36297 * 119.84519 * 180.02562 * 10 9 7 12 12 C 1.39620 * 120.15401 * 0.02562 * 11 10 9 13 13 N 1.38758 * 119.84752 * 179.97438 * 12 11 10 14 14 C 1.39809 * 120.00135 * 148.08654 * 13 12 11 15 15 C 1.39512 * 119.86873 * 335.24569 * 14 13 12 16 16 C 1.37305 * 120.12737 * 179.97438 * 15 14 13 17 17 C 1.39900 * 120.45339 * 0.02562 * 16 15 14 18 18 S 1.75945 * 130.39267 * 180.02562 * 17 16 15 19 19 C 1.75285 * 92.20556 * 179.80725 * 18 17 16 20 20 C 1.31824 * 111.40655 * 0.31776 * 19 18 17 21 21 C 1.39733 * 119.95232 * 359.97438 * 17 16 15 22 22 C 1.37786 * 119.86838 * 155.26952 * 14 13 12 23 23 C 1.39620 * 120.31137 * 0.23375 * 12 11 10 24 24 C 1.36307 * 120.15007 * 359.47983 * 23 12 11 25 25 H 0.97002 * 120.00083 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.07684 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.92260 * 180.02562 * 11 10 9 28 28 H 0.97001 * 120.00005 * 328.09993 * 13 12 11 29 29 H 1.08007 * 119.93424 * 0.02562 * 15 14 13 30 30 H 1.08001 * 119.77554 * 180.02562 * 16 15 14 31 31 H 1.08004 * 124.30033 * 180.18499 * 19 18 17 32 32 H 1.07997 * 122.56321 * 179.89533 * 20 19 18 33 33 H 1.08002 * 119.86136 * 359.97438 * 22 14 13 34 34 H 1.07996 * 119.92925 * 179.72004 * 23 12 11 35 35 H 1.08006 * 120.07537 * 180.25863 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 3.0969 1.6965 -1.2126 5 1 1.2782 2.7465 0.0006 6 1 3.0970 1.6965 1.2124 7 6 2.0085 -1.2109 -0.0005 8 1 3.0699 -1.2217 0.1981 9 6 1.3271 -2.4188 -0.2606 10 6 1.8047 -3.6307 0.2769 11 6 1.1419 -4.7939 0.0213 12 6 -0.0074 -4.7866 -0.7715 13 7 -0.6768 -5.9746 -1.0281 14 6 -2.0644 -5.9723 -1.1993 15 6 -2.8330 -4.9567 -0.6298 16 6 -4.1960 -4.9489 -0.7950 17 6 -4.8266 -5.9562 -1.5332 18 16 -6.5285 -6.2007 -1.9065 19 6 -6.1882 -7.6556 -2.8229 20 6 -4.8983 -7.9273 -2.8329 21 6 -4.0676 -6.9787 -2.1084 22 6 -2.6674 -6.9732 -1.9293 23 6 -0.4832 -3.5904 -1.3118 24 6 0.1665 -2.4189 -1.0595 25 1 -0.4850 0.8401 0.0004 26 1 2.6938 -3.6377 0.8900 27 1 1.5066 -5.7234 0.4329 28 1 -0.1821 -6.8068 -1.0886 29 1 -2.3547 -4.1746 -0.0587 30 1 -4.7854 -4.1597 -0.3521 31 1 -6.9401 -8.2548 -3.3150 32 1 -4.4890 -8.7859 -3.3443 33 1 -2.0662 -7.7563 -2.3673 34 1 -1.3702 -3.5925 -1.9279 35 1 -0.2050 -1.4937 -1.4746 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213930918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:31 Heat of formation + Delta-G solvation = 66.977872 kcal Electronic energy + Delta-G solvation = -19567.245572 eV Core-core repulsion = 16620.766634 eV Total energy + Delta-G solvation = -2946.478938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.65273 -37.97392 -35.92063 -34.08731 -32.97877 -30.38711 -29.71542 -28.94347 -27.90892 -24.85293 -23.06423 -22.72070 -20.99670 -20.92996 -19.64028 -17.79668 -17.39620 -16.64834 -16.20574 -15.32788 -15.18417 -14.77271 -14.04831 -13.85256 -13.46372 -13.44176 -13.19604 -12.80978 -12.70972 -12.21802 -12.02039 -11.88407 -11.63940 -11.27233 -11.13307 -10.95239 -10.89817 -10.57550 -10.54502 -10.07188 -9.86777 -9.46325 -9.30898 -8.88886 -8.06756 -7.66098 -7.51613 -6.78166 -6.53200 -4.31344 0.93096 1.57573 1.72504 2.16396 2.45716 2.74670 2.95748 3.05136 3.07492 3.16100 3.90466 3.97753 4.04693 4.60659 4.76659 5.00478 5.30964 5.51685 5.59709 5.60725 5.75914 5.86644 6.02051 6.08973 6.17716 6.26175 6.44120 6.57784 6.65400 6.78670 6.84394 6.99154 7.08273 7.17977 7.40561 7.50791 7.69896 7.95976 8.09372 8.26409 8.39150 8.57012 8.83950 8.91218 10.17821 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.003356 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.127711 B = 8342.307479 C = 9203.211747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.098 3.902 10 C -0.204 4.204 11 C -0.117 4.117 12 C 0.024 3.976 13 N -0.671 5.671 14 C 0.219 3.781 15 C -0.139 4.139 16 C -0.052 4.052 17 C -0.182 4.182 18 S 0.053 5.947 19 C -0.193 4.193 20 C -0.120 4.120 21 C -0.039 4.039 22 C -0.173 4.173 23 C -0.125 4.125 24 C -0.138 4.138 25 H 0.281 0.719 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.396 0.604 29 H 0.142 0.858 30 H 0.124 0.876 31 H 0.161 0.839 32 H 0.140 0.860 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 -10.177 -3.558 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.095 3.905 10 C -0.224 4.224 11 C -0.138 4.138 12 C -0.070 4.070 13 N -0.291 5.291 14 C 0.114 3.886 15 C -0.162 4.162 16 C -0.075 4.075 17 C -0.298 4.298 18 S 0.314 5.686 19 C -0.327 4.327 20 C -0.151 4.151 21 C -0.047 4.047 22 C -0.199 4.199 23 C -0.145 4.145 24 C -0.158 4.158 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.231 0.769 29 H 0.160 0.840 30 H 0.142 0.858 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.036 -9.110 -3.200 13.927 hybrid contribution 1.772 -0.356 -0.327 1.837 sum -8.264 -9.467 -3.527 13.052 Atomic orbital electron populations 1.69812 1.07382 1.29227 1.36177 1.25881 0.94845 1.01238 0.92440 0.86327 0.80019 0.80236 0.79889 1.18904 1.20335 1.19077 1.19469 0.96299 0.90719 1.42423 0.90546 1.17635 0.91687 0.92105 0.89071 1.20619 1.02908 0.92849 1.06004 1.20064 0.97073 0.97286 0.99385 1.17182 0.97829 0.85300 1.06697 1.41683 1.02635 1.08484 1.76296 1.17564 0.84133 0.94198 0.92688 1.21095 0.92622 1.00723 1.01767 1.20239 0.93937 0.96236 0.97096 1.22317 0.96109 1.02091 1.09296 1.83901 1.05166 1.24715 1.54808 1.24926 0.99792 1.01799 1.06176 1.20923 0.92536 1.00180 1.01488 1.18924 0.93336 0.94113 0.98347 1.20246 0.92407 1.02486 1.04723 1.20413 1.00486 0.92438 1.01166 1.21019 0.98098 0.96396 1.00296 0.90838 0.88628 0.89172 0.76930 0.84009 0.85794 0.82104 0.84270 0.86152 0.88762 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.14 10.84 55.54 0.60 -19.54 16 2 C 0.07 1.78 5.23 -17.34 -0.09 1.69 16 3 Si 0.91 18.32 29.58 -169.99 -5.03 13.30 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -11.78 9.04 -37.90 -0.34 -12.13 16 8 H 0.08 1.88 7.87 -52.49 -0.41 1.47 16 9 C 0.10 2.50 5.56 -106.79 -0.59 1.90 16 10 C -0.20 -4.75 9.74 -39.27 -0.38 -5.13 16 11 C -0.12 -2.47 9.89 -39.76 -0.39 -2.87 16 12 C 0.02 0.49 5.92 -83.70 -0.50 0.00 16 13 N -0.67 -11.62 5.42 -8.41 -0.05 -11.67 16 14 C 0.22 3.71 6.03 -83.91 -0.51 3.20 16 15 C -0.14 -2.43 7.81 -39.45 -0.31 -2.74 16 16 C -0.05 -0.83 10.05 -39.30 -0.39 -1.23 16 17 C -0.18 -2.79 6.48 -38.40 -0.25 -3.04 16 18 S 0.05 0.67 23.23 -107.50 -2.50 -1.83 16 19 C -0.19 -2.15 11.02 28.84 0.32 -1.83 16 20 C -0.12 -1.45 10.39 -38.62 -0.40 -1.86 16 21 C -0.04 -0.58 6.04 -105.37 -0.64 -1.22 16 22 C -0.17 -2.61 9.97 -38.64 -0.39 -2.99 16 23 C -0.12 -2.80 7.62 -39.76 -0.30 -3.10 16 24 C -0.14 -3.44 8.61 -39.27 -0.34 -3.78 16 25 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 26 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 27 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.40 5.83 8.87 -40.82 -0.36 5.46 16 29 H 0.14 2.74 6.26 -52.48 -0.33 2.41 16 30 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.09 2.04 6.55 -52.49 -0.34 1.69 16 35 H 0.12 3.20 6.18 -52.48 -0.32 2.87 16 LS Contribution 312.16 15.07 4.70 4.70 Total: -1.00 -26.58 312.16 -11.21 -37.79 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -3.44 Total: 12.35 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: -5.50 Total: -35.11 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.56 Total: -31.20 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.50 Total: -1.83 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.58 -11.21 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213930918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.773 kcal (2) G-P(sol) polarization free energy of solvation -26.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds