Wall clock time and date at job start Tue Mar 31 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86800 * 119.99611 * 2 1 4 4 H 1.48508 * 109.46896 * 240.00223 * 3 2 1 5 5 H 1.48502 * 109.47536 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47317 * 120.00447 * 3 2 1 7 7 C 1.39825 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00521 * 192.26165 * 7 2 1 9 9 C 1.41100 * 119.99846 * 12.26002 * 7 2 1 10 10 C 1.40907 * 120.15363 * 207.71188 * 9 7 2 11 11 C 1.36297 * 119.84519 * 180.02562 * 10 9 7 12 12 C 1.39620 * 120.15401 * 0.02562 * 11 10 9 13 13 N 1.38758 * 119.84752 * 179.97438 * 12 11 10 14 14 C 1.39809 * 120.00135 * 148.08654 * 13 12 11 15 15 C 1.39512 * 119.86873 * 335.24569 * 14 13 12 16 16 C 1.37305 * 120.12737 * 179.97438 * 15 14 13 17 17 C 1.39900 * 120.45339 * 0.02562 * 16 15 14 18 18 S 1.75945 * 130.39267 * 180.02562 * 17 16 15 19 19 C 1.75285 * 92.20556 * 179.80725 * 18 17 16 20 20 C 1.31824 * 111.40655 * 0.31776 * 19 18 17 21 21 C 1.39733 * 119.95232 * 359.97438 * 17 16 15 22 22 C 1.37786 * 119.86838 * 155.26952 * 14 13 12 23 23 C 1.39620 * 120.31137 * 0.23375 * 12 11 10 24 24 C 1.36307 * 120.15007 * 359.47983 * 23 12 11 25 25 H 0.97002 * 120.00083 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.07684 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.92260 * 180.02562 * 11 10 9 28 28 H 0.97001 * 120.00005 * 328.09993 * 13 12 11 29 29 H 1.08007 * 119.93424 * 0.02562 * 15 14 13 30 30 H 1.08001 * 119.77554 * 180.02562 * 16 15 14 31 31 H 1.08004 * 124.30033 * 180.18499 * 19 18 17 32 32 H 1.07997 * 122.56321 * 179.89533 * 20 19 18 33 33 H 1.08002 * 119.86136 * 359.97438 * 22 14 13 34 34 H 1.07996 * 119.92925 * 179.72004 * 23 12 11 35 35 H 1.08006 * 120.07537 * 180.25863 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 3.0969 1.6965 -1.2126 5 1 1.2782 2.7465 0.0006 6 1 3.0970 1.6965 1.2124 7 6 2.0085 -1.2109 -0.0005 8 1 3.0699 -1.2217 0.1981 9 6 1.3271 -2.4188 -0.2606 10 6 1.8047 -3.6307 0.2769 11 6 1.1419 -4.7939 0.0213 12 6 -0.0074 -4.7866 -0.7715 13 7 -0.6768 -5.9746 -1.0281 14 6 -2.0644 -5.9723 -1.1993 15 6 -2.8330 -4.9567 -0.6298 16 6 -4.1960 -4.9489 -0.7950 17 6 -4.8266 -5.9562 -1.5332 18 16 -6.5285 -6.2007 -1.9065 19 6 -6.1882 -7.6556 -2.8229 20 6 -4.8983 -7.9273 -2.8329 21 6 -4.0676 -6.9787 -2.1084 22 6 -2.6674 -6.9732 -1.9293 23 6 -0.4832 -3.5904 -1.3118 24 6 0.1665 -2.4189 -1.0595 25 1 -0.4850 0.8401 0.0004 26 1 2.6938 -3.6377 0.8900 27 1 1.5066 -5.7234 0.4329 28 1 -0.1821 -6.8068 -1.0886 29 1 -2.3547 -4.1746 -0.0587 30 1 -4.7854 -4.1597 -0.3521 31 1 -6.9401 -8.2548 -3.3150 32 1 -4.4890 -8.7859 -3.3443 33 1 -2.0662 -7.7563 -2.3673 34 1 -1.3702 -3.5925 -1.9279 35 1 -0.2050 -1.4937 -1.4746 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213930918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:31 Heat of formation + Delta-G solvation = 55.608421 kcal Electronic energy + Delta-G solvation = -19567.738588 eV Core-core repulsion = 16620.766634 eV Total energy + Delta-G solvation = -2946.971954 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98177 -39.52685 -37.32994 -35.54458 -34.51325 -31.84119 -31.46144 -30.36226 -29.32816 -26.55869 -24.26264 -24.04091 -22.68644 -22.45748 -20.93703 -19.24283 -18.91523 -18.14109 -17.52615 -16.97470 -16.48106 -15.97688 -15.71507 -15.31800 -14.73838 -14.62369 -14.56784 -14.37536 -13.93546 -13.90319 -13.60507 -13.46543 -13.00019 -12.77202 -12.70830 -12.50692 -12.29413 -12.03093 -11.67215 -11.61937 -11.53183 -11.16577 -10.88311 -10.21285 -9.51304 -9.37079 -8.82875 -8.57089 -8.01305 -6.18883 -0.17359 0.29376 0.68771 0.99955 1.13307 1.15383 1.39603 1.42614 1.50810 1.56069 2.23149 2.58329 2.73098 2.87748 3.73680 3.75084 3.88449 4.24538 4.32510 4.39226 4.42183 4.46506 4.66833 4.85814 4.92315 5.00096 5.07024 5.12734 5.17466 5.27524 5.33040 5.41038 5.51753 5.59449 5.71165 5.84106 5.94663 6.10300 6.30206 6.56446 6.74669 6.96532 6.98381 7.12363 8.39620 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.003356 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.127711 B = 8342.307479 C = 9203.211747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.031 3.969 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.063 3.937 10 C -0.211 4.211 11 C -0.121 4.121 12 C 0.050 3.950 13 N -0.668 5.668 14 C 0.200 3.800 15 C -0.161 4.161 16 C -0.057 4.057 17 C -0.201 4.201 18 S 0.062 5.938 19 C -0.177 4.177 20 C -0.131 4.131 21 C -0.049 4.049 22 C -0.161 4.161 23 C -0.129 4.129 24 C -0.157 4.157 25 H 0.285 0.715 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.412 0.588 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.199 0.801 32 H 0.170 0.830 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 -12.633 -4.576 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.061 3.939 10 C -0.231 4.231 11 C -0.142 4.142 12 C -0.046 4.046 13 N -0.291 5.291 14 C 0.097 3.903 15 C -0.184 4.184 16 C -0.080 4.080 17 C -0.317 4.317 18 S 0.324 5.676 19 C -0.311 4.311 20 C -0.161 4.161 21 C -0.057 4.057 22 C -0.186 4.186 23 C -0.150 4.150 24 C -0.177 4.177 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.249 0.751 29 H 0.132 0.868 30 H 0.150 0.850 31 H 0.216 0.784 32 H 0.188 0.812 33 H 0.165 0.835 34 H 0.115 0.885 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.250 -11.615 -4.225 16.713 hybrid contribution 1.862 0.139 -0.078 1.869 sum -9.387 -11.476 -4.303 15.439 Atomic orbital electron populations 1.69893 1.08757 1.30176 1.37393 1.26695 0.95578 1.04350 0.91592 0.85260 0.78661 0.75888 0.79933 1.18572 1.19514 1.18475 1.19705 0.96495 0.91896 1.44676 0.90643 1.17938 0.92507 0.93248 0.90254 1.20835 1.03368 0.92997 1.05924 1.20358 0.96849 0.97953 0.99001 1.17217 0.97084 0.85974 1.04282 1.41495 1.02943 1.07801 1.76893 1.17656 0.83761 0.95038 0.93893 1.20935 0.93567 1.00891 1.03038 1.20340 0.93526 0.96880 0.97209 1.22637 0.98163 1.01952 1.08963 1.83943 1.02890 1.25861 1.54917 1.25410 1.00397 1.00632 1.04620 1.21156 0.92466 1.00715 1.01779 1.19383 0.93515 0.94598 0.98239 1.20509 0.92962 1.01962 1.03164 1.20437 1.00473 0.92647 1.01449 1.20907 0.98938 0.96497 1.01407 0.90478 0.87751 0.85766 0.75101 0.86831 0.85040 0.78362 0.81221 0.83510 0.88530 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.23 10.84 21.81 0.24 -43.99 16 2 C 0.03 1.57 5.23 85.21 0.45 2.02 16 3 Si 0.98 38.67 29.58 68.60 2.03 40.69 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.50 -26.76 9.04 23.36 0.21 -26.55 16 8 H 0.08 3.89 7.87 -2.91 -0.02 3.86 16 9 C 0.06 3.38 5.56 -21.27 -0.12 3.26 16 10 C -0.21 -10.03 9.74 22.47 0.22 -9.81 16 11 C -0.12 -5.03 9.89 22.15 0.22 -4.81 16 12 C 0.05 2.06 5.92 38.71 0.23 2.29 16 13 N -0.67 -22.32 5.42 -180.52 -0.98 -23.30 16 14 C 0.20 6.60 6.03 38.07 0.23 6.83 16 15 C -0.16 -5.76 7.81 22.36 0.17 -5.59 16 16 C -0.06 -1.82 10.05 22.45 0.23 -1.60 16 17 C -0.20 -5.86 6.48 23.03 0.15 -5.71 16 18 S 0.06 1.42 23.23 -56.49 -1.31 0.10 16 19 C -0.18 -3.15 11.02 67.04 0.74 -2.41 16 20 C -0.13 -2.61 10.39 23.34 0.24 -2.37 16 21 C -0.05 -1.32 6.04 -20.35 -0.12 -1.44 16 22 C -0.16 -4.47 9.97 22.88 0.23 -4.24 16 23 C -0.13 -6.02 7.62 22.15 0.17 -5.86 16 24 C -0.16 -8.29 8.61 22.47 0.19 -8.10 16 25 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 26 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 27 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.41 11.13 8.87 -92.71 -0.82 10.31 16 29 H 0.11 4.67 6.26 -2.91 -0.02 4.65 16 30 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 34 H 0.10 4.36 6.55 -2.91 -0.02 4.34 16 35 H 0.10 5.70 6.18 -2.91 -0.02 5.68 16 Total: -1.00 -60.26 312.16 3.72 -56.54 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.31 Total: 34.05 kcal Atomic # 6 Polarization: -67.53 SS G_CDS: 3.43 Total: -64.09 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -0.74 Total: -67.29 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.31 Total: 0.10 kcal Total: -60.26 3.72 -56.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213930918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.149 kcal (2) G-P(sol) polarization free energy of solvation -60.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds