Wall clock time and date at job start Tue Mar 31 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48506 * 109.47224 * 269.99789 * 3 2 1 5 5 H 1.48495 * 109.47217 * 30.00089 * 3 2 1 6 6 H 1.48506 * 109.47195 * 150.00323 * 3 2 1 7 7 C 1.39934 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00231 * 199.11914 * 7 2 1 9 9 C 1.41411 * 119.99574 * 19.11212 * 7 2 1 10 10 C 1.40796 * 120.20237 * 204.51184 * 9 7 2 11 11 C 1.37658 * 119.89184 * 180.02562 * 10 9 7 12 12 C 1.38510 * 120.33050 * 359.72035 * 11 10 9 13 13 C 1.39320 * 120.41952 * 0.55362 * 12 11 10 14 14 N 1.39701 * 119.95366 * 179.72028 * 13 12 11 15 15 C 1.39993 * 119.99721 * 324.37489 * 14 13 12 16 16 C 1.39452 * 119.86517 * 331.51108 * 15 14 13 17 17 C 1.37337 * 120.12711 * 179.97438 * 16 15 14 18 18 C 1.39865 * 120.45093 * 0.02562 * 17 16 15 19 19 S 1.75949 * 130.39218 * 180.02562 * 18 17 16 20 20 C 1.75292 * 92.19947 * 179.78170 * 19 18 17 21 21 C 1.31835 * 111.39729 * 0.31702 * 20 19 18 22 22 C 1.39700 * 119.94150 * 359.97438 * 18 17 16 23 23 C 1.37709 * 119.86120 * 151.49253 * 15 14 13 24 24 C 1.38338 * 120.09346 * 359.44889 * 13 12 11 25 25 H 0.97003 * 120.00266 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.05394 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.82879 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.78981 * 180.28042 * 12 11 10 29 29 H 0.96989 * 120.00464 * 144.37117 * 14 13 12 30 30 H 1.08004 * 119.93246 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.77248 * 180.02562 * 17 16 15 32 32 H 1.07998 * 124.30293 * 180.18893 * 20 19 18 33 33 H 1.07997 * 122.56045 * 179.89682 * 21 20 19 34 34 H 1.08002 * 119.85642 * 0.02562 * 23 15 14 35 35 H 1.07998 * 120.16371 * 180.24611 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0432 -1.2378 0.3058 9 6 1.3593 -2.4025 -0.4021 10 6 1.8237 -3.6507 0.0548 11 6 1.1877 -4.8059 -0.3405 12 6 0.0888 -4.7466 -1.1816 13 6 -0.3785 -3.5191 -1.6462 14 7 -1.4842 -3.4711 -2.4988 15 6 -1.6771 -4.4779 -3.4521 16 6 -0.5781 -5.1578 -3.9762 17 6 -0.7613 -6.1468 -4.9113 18 6 -2.0476 -6.4811 -5.3469 19 16 -2.5790 -7.6851 -6.5147 20 6 -4.2649 -7.2654 -6.2816 21 6 -4.4014 -6.2938 -5.4011 22 6 -3.1563 -5.8069 -4.8292 23 6 -2.9514 -4.7930 -3.8683 24 6 0.2473 -2.3474 -1.2600 25 1 -0.4851 0.8400 0.0004 26 1 2.6774 -3.7019 0.7143 27 1 1.5446 -5.7628 0.0109 28 1 -0.4062 -5.6580 -1.4826 29 1 -2.1181 -2.7402 -2.4302 30 1 0.4189 -4.9061 -3.6459 31 1 0.0939 -6.6700 -5.3130 32 1 -5.0872 -7.7408 -6.7956 33 1 -5.3648 -5.8931 -5.1223 34 1 -3.7977 -4.2620 -3.4580 35 1 -0.1165 -1.3950 -1.6163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213932783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:13 Heat of formation + Delta-G solvation = 63.534747 kcal Electronic energy + Delta-G solvation = -19592.461955 eV Core-core repulsion = 16645.833712 eV Total energy + Delta-G solvation = -2946.628243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.64404 -37.88710 -35.85256 -33.97579 -33.28247 -30.44660 -29.62120 -28.93739 -27.19566 -25.33288 -23.30538 -22.63205 -21.02042 -20.92383 -19.61546 -17.91030 -17.33686 -16.56242 -15.90584 -15.40957 -14.94277 -14.76875 -14.55099 -13.88136 -13.51698 -13.48204 -13.22783 -12.90474 -12.71242 -12.41710 -11.90434 -11.86443 -11.54225 -11.21728 -11.15973 -10.97632 -10.74979 -10.64776 -10.56395 -10.01298 -9.77798 -9.62113 -9.24812 -9.00702 -8.17315 -7.58807 -7.48459 -6.89408 -6.43097 -4.44062 0.88049 1.51640 1.66845 2.10337 2.41516 2.73612 2.97312 3.03934 3.06990 3.17910 3.88235 3.93086 4.00263 4.56155 4.72830 4.94735 5.27162 5.46571 5.54460 5.59729 5.70144 5.82538 5.97650 6.16509 6.19798 6.38231 6.45792 6.51899 6.60406 6.72249 6.87616 6.98874 7.06920 7.21278 7.26306 7.67641 7.78149 7.90369 7.99355 8.29908 8.36187 8.61999 8.83020 8.89731 10.10894 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.003266 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.733883 B = 8572.091600 C = 9010.748666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.128 3.872 10 C -0.238 4.238 11 C -0.074 4.074 12 C -0.267 4.267 13 C 0.171 3.829 14 N -0.686 5.686 15 C 0.218 3.782 16 C -0.131 4.131 17 C -0.056 4.056 18 C -0.177 4.177 19 S 0.053 5.947 20 C -0.193 4.193 21 C -0.118 4.118 22 C -0.042 4.042 23 C -0.161 4.161 24 C -0.195 4.195 25 H 0.280 0.720 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.403 0.597 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 -8.131 -9.698 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.093 4.093 12 C -0.288 4.288 13 C 0.077 3.923 14 N -0.308 5.308 15 C 0.115 3.885 16 C -0.154 4.154 17 C -0.079 4.079 18 C -0.293 4.293 19 S 0.314 5.686 20 C -0.327 4.327 21 C -0.149 4.149 22 C -0.050 4.050 23 C -0.187 4.187 24 C -0.217 4.217 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.239 0.761 30 H 0.157 0.843 31 H 0.142 0.858 32 H 0.180 0.820 33 H 0.159 0.841 34 H 0.141 0.859 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.894 -9.084 -10.550 15.119 hybrid contribution -0.783 2.072 0.996 2.428 sum -6.677 -7.012 -9.555 13.603 Atomic orbital electron populations 1.69829 1.07633 1.29237 1.34896 1.25903 0.94697 1.01332 0.92081 0.86334 0.80591 0.80587 0.79364 1.19252 1.20340 1.18557 1.19586 0.98752 0.91358 1.39493 0.90248 1.17381 0.90248 0.92091 0.87794 1.20986 1.04719 0.92744 1.07367 1.20361 0.95398 0.96606 0.96972 1.20176 1.04003 0.94844 1.09787 1.17554 0.88111 0.94574 0.92068 1.42259 1.27671 1.25589 1.35249 1.17548 0.92524 0.89649 0.88803 1.21033 0.99178 0.97872 0.97351 1.20218 0.93960 0.97078 0.96674 1.22335 0.97417 1.04043 1.05489 1.83893 0.99401 1.40348 1.44912 1.24931 0.99856 1.03246 1.04633 1.20943 0.97809 0.98042 0.98153 1.18948 0.91354 0.97048 0.97686 1.20380 0.95505 1.00614 1.02196 1.21040 1.00582 0.95594 1.04460 0.90894 0.88924 0.89134 0.89119 0.76125 0.84301 0.85787 0.82026 0.84149 0.85895 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.69 11.04 55.55 0.61 -19.08 16 2 C 0.08 1.90 5.11 -17.35 -0.09 1.81 16 3 Si 0.91 18.19 29.60 -169.99 -5.03 13.16 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.46 -11.91 9.04 -37.74 -0.34 -12.25 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 9 C 0.13 3.30 5.57 -106.85 -0.59 2.70 16 10 C -0.24 -5.68 9.79 -38.83 -0.38 -6.06 16 11 C -0.07 -1.63 10.01 -39.69 -0.40 -2.03 16 12 C -0.27 -5.79 8.02 -39.08 -0.31 -6.10 16 13 C 0.17 3.77 5.74 -83.83 -0.48 3.29 16 14 N -0.69 -12.85 5.44 -8.55 -0.05 -12.90 16 15 C 0.22 3.74 5.91 -83.87 -0.50 3.25 16 16 C -0.13 -2.20 8.11 -39.46 -0.32 -2.52 16 17 C -0.06 -0.84 10.05 -39.30 -0.40 -1.24 16 18 C -0.18 -2.60 6.48 -38.43 -0.25 -2.85 16 19 S 0.05 0.64 23.23 -107.50 -2.50 -1.86 16 20 C -0.19 -2.09 11.02 28.83 0.32 -1.77 16 21 C -0.12 -1.42 10.39 -38.63 -0.40 -1.82 16 22 C -0.04 -0.62 6.04 -105.38 -0.64 -1.26 16 23 C -0.16 -2.48 9.98 -38.66 -0.39 -2.86 16 24 C -0.19 -4.81 8.61 -38.67 -0.33 -5.14 16 25 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 26 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 27 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.09 1.88 6.98 -52.49 -0.37 1.51 16 29 H 0.40 6.96 8.91 -40.82 -0.36 6.60 16 30 H 0.14 2.48 6.70 -52.48 -0.35 2.13 16 31 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.12 3.04 6.21 -52.49 -0.33 2.72 16 LS Contribution 313.87 15.07 4.73 4.73 Total: -1.00 -26.72 313.87 -11.22 -37.95 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -3.49 Total: 12.85 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: -5.50 Total: -34.84 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.57 Total: -31.98 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.50 Total: -1.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.72 -11.22 -37.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213932783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.480 kcal (2) G-P(sol) polarization free energy of solvation -26.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds