Wall clock time and date at job start Tue Mar 31 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48506 * 109.47224 * 269.99789 * 3 2 1 5 5 H 1.48495 * 109.47217 * 30.00089 * 3 2 1 6 6 H 1.48506 * 109.47195 * 150.00323 * 3 2 1 7 7 C 1.39934 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00231 * 199.11914 * 7 2 1 9 9 C 1.41411 * 119.99574 * 19.11212 * 7 2 1 10 10 C 1.40796 * 120.20237 * 204.51184 * 9 7 2 11 11 C 1.37658 * 119.89184 * 180.02562 * 10 9 7 12 12 C 1.38510 * 120.33050 * 359.72035 * 11 10 9 13 13 C 1.39320 * 120.41952 * 0.55362 * 12 11 10 14 14 N 1.39701 * 119.95366 * 179.72028 * 13 12 11 15 15 C 1.39993 * 119.99721 * 324.37489 * 14 13 12 16 16 C 1.39452 * 119.86517 * 331.51108 * 15 14 13 17 17 C 1.37337 * 120.12711 * 179.97438 * 16 15 14 18 18 C 1.39865 * 120.45093 * 0.02562 * 17 16 15 19 19 S 1.75949 * 130.39218 * 180.02562 * 18 17 16 20 20 C 1.75292 * 92.19947 * 179.78170 * 19 18 17 21 21 C 1.31835 * 111.39729 * 0.31702 * 20 19 18 22 22 C 1.39700 * 119.94150 * 359.97438 * 18 17 16 23 23 C 1.37709 * 119.86120 * 151.49253 * 15 14 13 24 24 C 1.38338 * 120.09346 * 359.44889 * 13 12 11 25 25 H 0.97003 * 120.00266 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.05394 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.82879 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.78981 * 180.28042 * 12 11 10 29 29 H 0.96989 * 120.00464 * 144.37117 * 14 13 12 30 30 H 1.08004 * 119.93246 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.77248 * 180.02562 * 17 16 15 32 32 H 1.07998 * 124.30293 * 180.18893 * 20 19 18 33 33 H 1.07997 * 122.56045 * 179.89682 * 21 20 19 34 34 H 1.08002 * 119.85642 * 0.02562 * 23 15 14 35 35 H 1.07998 * 120.16371 * 180.24611 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0432 -1.2378 0.3058 9 6 1.3593 -2.4025 -0.4021 10 6 1.8237 -3.6507 0.0548 11 6 1.1877 -4.8059 -0.3405 12 6 0.0888 -4.7466 -1.1816 13 6 -0.3785 -3.5191 -1.6462 14 7 -1.4842 -3.4711 -2.4988 15 6 -1.6771 -4.4779 -3.4521 16 6 -0.5781 -5.1578 -3.9762 17 6 -0.7613 -6.1468 -4.9113 18 6 -2.0476 -6.4811 -5.3469 19 16 -2.5790 -7.6851 -6.5147 20 6 -4.2649 -7.2654 -6.2816 21 6 -4.4014 -6.2938 -5.4011 22 6 -3.1563 -5.8069 -4.8292 23 6 -2.9514 -4.7930 -3.8683 24 6 0.2473 -2.3474 -1.2600 25 1 -0.4851 0.8400 0.0004 26 1 2.6774 -3.7019 0.7143 27 1 1.5446 -5.7628 0.0109 28 1 -0.4062 -5.6580 -1.4826 29 1 -2.1181 -2.7402 -2.4302 30 1 0.4189 -4.9061 -3.6459 31 1 0.0939 -6.6700 -5.3130 32 1 -5.0872 -7.7408 -6.7956 33 1 -5.3648 -5.8931 -5.1223 34 1 -3.7977 -4.2620 -3.4580 35 1 -0.1165 -1.3950 -1.6163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213932783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:13 Heat of formation + Delta-G solvation = 52.252828 kcal Electronic energy + Delta-G solvation = -19592.951176 eV Core-core repulsion = 16645.833712 eV Total energy + Delta-G solvation = -2947.117463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.93222 -39.45629 -37.23671 -35.51519 -34.77701 -31.82810 -31.41378 -30.18705 -28.68957 -27.17617 -24.43855 -23.89114 -22.74723 -22.37435 -20.97201 -19.27497 -18.79044 -18.01940 -17.38533 -16.80456 -16.46869 -16.26507 -15.92391 -15.31124 -14.75310 -14.68231 -14.59195 -14.41675 -14.14239 -13.82845 -13.51799 -13.12933 -13.04566 -12.88913 -12.73367 -12.36393 -12.20568 -12.08530 -11.69289 -11.58823 -11.51156 -11.17011 -10.96781 -10.29013 -9.47873 -9.32677 -8.84050 -8.64752 -7.93181 -6.36003 -0.19305 0.26584 0.67189 0.99012 1.12573 1.17119 1.38554 1.42244 1.50949 1.54505 2.20561 2.51111 2.68128 2.82857 3.72618 3.74075 3.86841 4.23688 4.29859 4.43333 4.45989 4.65663 4.68867 4.83672 4.89416 4.93532 5.10893 5.14229 5.16594 5.21990 5.33458 5.37481 5.48544 5.55295 5.73649 5.92125 6.04484 6.10958 6.19206 6.48898 6.81949 6.85180 6.95800 7.07092 8.31737 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.003266 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.733883 B = 8572.091600 C = 9010.748666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.260 4.260 11 C -0.071 4.071 12 C -0.265 4.265 13 C 0.184 3.816 14 N -0.688 5.688 15 C 0.195 3.805 16 C -0.150 4.150 17 C -0.054 4.054 18 C -0.196 4.196 19 S 0.075 5.925 20 C -0.177 4.177 21 C -0.134 4.134 22 C -0.052 4.052 23 C -0.158 4.158 24 C -0.221 4.221 25 H 0.288 0.712 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.407 0.593 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.199 0.801 33 H 0.166 0.834 34 H 0.138 0.862 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.990 -9.471 -11.235 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.280 4.280 11 C -0.089 4.089 12 C -0.287 4.287 13 C 0.088 3.912 14 N -0.311 5.311 15 C 0.093 3.907 16 C -0.173 4.173 17 C -0.076 4.076 18 C -0.311 4.311 19 S 0.337 5.663 20 C -0.311 4.311 21 C -0.164 4.164 22 C -0.061 4.061 23 C -0.182 4.182 24 C -0.243 4.243 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.122 0.878 29 H 0.243 0.757 30 H 0.138 0.862 31 H 0.161 0.839 32 H 0.216 0.784 33 H 0.183 0.817 34 H 0.156 0.844 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.427 -10.463 -12.119 17.649 hybrid contribution -0.465 2.247 1.296 2.635 sum -7.891 -8.216 -10.823 15.714 Atomic orbital electron populations 1.69878 1.08921 1.30477 1.35198 1.26703 0.95460 1.04336 0.91163 0.85252 0.79215 0.76139 0.79407 1.18903 1.19248 1.18225 1.19824 0.98948 0.92673 1.41471 0.90602 1.17744 0.91035 0.93056 0.88418 1.21145 1.05561 0.92966 1.08323 1.20685 0.94817 0.97314 0.96114 1.20365 1.03914 0.95112 1.09272 1.17577 0.88217 0.93928 0.91462 1.42137 1.26873 1.26549 1.35574 1.17691 0.93566 0.90019 0.89382 1.20936 0.98285 0.99243 0.98845 1.20396 0.95095 0.96339 0.95797 1.22699 0.97363 1.04905 1.06164 1.83889 1.00338 1.38760 1.43307 1.25418 1.00032 1.02124 1.03487 1.21144 0.97734 0.98799 0.98740 1.19344 0.92844 0.96588 0.97306 1.20561 0.95146 1.00608 1.01924 1.20948 1.01589 0.95842 1.05955 0.90187 0.88427 0.86058 0.87840 0.75670 0.86157 0.83935 0.78370 0.81665 0.84390 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.16 11.04 21.82 0.24 -41.92 16 2 C 0.04 1.95 5.11 85.25 0.44 2.38 16 3 Si 0.98 38.00 29.60 68.60 2.03 40.03 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.50 -26.87 9.04 23.46 0.21 -26.66 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.10 5.41 5.57 -21.31 -0.12 5.29 16 10 C -0.26 -12.76 9.79 22.76 0.22 -12.53 16 11 C -0.07 -3.10 10.01 22.20 0.22 -2.87 16 12 C -0.27 -11.58 8.02 22.60 0.18 -11.40 16 13 C 0.18 8.35 5.74 38.17 0.22 8.57 16 14 N -0.69 -26.40 5.44 -180.96 -0.98 -27.39 16 15 C 0.19 6.70 5.91 38.00 0.22 6.92 16 16 C -0.15 -5.07 8.11 22.35 0.18 -4.89 16 17 C -0.05 -1.55 10.05 22.45 0.23 -1.33 16 18 C -0.20 -5.37 6.48 23.02 0.15 -5.22 16 19 S 0.08 1.58 23.23 -56.49 -1.31 0.26 16 20 C -0.18 -3.06 11.02 67.03 0.74 -2.33 16 21 C -0.13 -2.73 10.39 23.33 0.24 -2.49 16 22 C -0.05 -1.42 6.04 -20.35 -0.12 -1.54 16 23 C -0.16 -4.67 9.98 22.87 0.23 -4.44 16 24 C -0.22 -11.43 8.61 22.86 0.20 -11.23 16 25 H 0.29 13.36 8.30 -92.71 -0.77 12.60 16 26 H 0.10 4.54 8.06 -2.91 -0.02 4.51 16 27 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 28 H 0.10 4.23 6.98 -2.91 -0.02 4.21 16 29 H 0.41 14.52 8.91 -92.72 -0.83 13.69 16 30 H 0.12 4.45 6.70 -2.91 -0.02 4.43 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.10 5.55 6.21 -2.91 -0.02 5.53 16 Total: -1.00 -59.36 313.87 3.72 -55.65 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 0.30 Total: 37.13 kcal Atomic # 6 Polarization: -67.20 SS G_CDS: 3.44 Total: -63.76 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -0.74 Total: -69.31 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.31 Total: 0.26 kcal Total: -59.36 3.72 -55.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213932783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.900 kcal (2) G-P(sol) polarization free energy of solvation -59.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds