Wall clock time and date at job start Tue Mar 31 2020 07:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39722 * 120.19324 * 294.85760 * 3 2 1 5 5 C 1.37813 * 119.89925 * 180.27442 * 4 3 2 6 6 C 1.38515 * 120.29740 * 359.70075 * 5 4 3 7 7 C 1.38106 * 120.39097 * 0.02562 * 6 5 4 8 8 C 1.38637 * 120.09075 * 359.97438 * 7 6 5 9 9 O 1.35707 * 120.14809 * 180.02562 * 8 7 6 10 10 C 1.42904 * 116.99950 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47239 * 180.02562 * 10 9 8 12 12 O 1.42896 * 109.46849 * 64.99796 * 11 10 9 13 13 C 1.42905 * 113.99706 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.47103 * 30.00588 * 13 12 11 15 15 C 1.50701 * 109.46937 * 150.00224 * 13 12 11 16 16 H 1.08001 * 120.00213 * 359.97438 * 15 13 12 17 17 C 1.37880 * 119.99755 * 180.02562 * 15 13 12 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46996 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47191 * 119.99785 * 19 17 15 22 22 H 1.48501 * 109.46922 * 240.00237 * 19 17 15 23 23 C 1.52997 * 109.47264 * 270.00308 * 13 12 11 24 24 Cl 1.80299 * 109.47411 * 65.00033 * 23 13 12 25 25 H 1.08002 * 120.04405 * 359.97385 * 4 3 2 26 26 H 1.08001 * 119.85221 * 179.71762 * 5 4 3 27 27 H 1.08007 * 119.80354 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.95180 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.46984 * 60.00035 * 10 9 8 30 30 H 1.09002 * 109.47088 * 300.00219 * 10 9 8 31 31 H 1.09000 * 109.47055 * 304.99606 * 11 10 9 32 32 H 1.09000 * 109.46997 * 184.99730 * 11 10 9 33 33 H 0.97001 * 119.99839 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.46881 * 185.00370 * 23 13 12 35 35 H 1.09002 * 109.47196 * 304.99885 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 -0.5067 1.0958 5 6 4.6490 -0.4979 1.0918 6 6 5.3415 0.0062 0.0032 7 6 4.6590 0.5055 -1.0887 8 6 3.2727 0.5045 -1.1018 9 8 2.6009 0.9944 -2.1744 10 6 3.3860 1.4970 -3.2575 11 6 2.4610 2.0029 -4.3662 12 8 1.7139 3.1235 -3.8889 13 6 0.8145 3.6756 -4.8525 14 1 0.4758 2.8884 -5.5261 15 6 -0.3726 4.2767 -4.1452 16 1 -0.4344 4.2404 -3.0675 17 6 -1.3804 4.8721 -4.8738 18 7 -1.3054 4.9158 -6.1861 19 14 -2.8523 5.6166 -3.9970 20 1 -2.6978 5.4374 -2.5310 21 1 -2.9361 7.0651 -4.3130 22 1 -4.0933 4.9384 -4.4500 23 6 1.5324 4.7612 -5.6569 24 17 2.8631 4.0159 -6.6185 25 1 2.7350 -0.9007 1.9467 26 1 5.1916 -0.8861 1.9411 27 1 6.4215 0.0088 0.0083 28 1 5.2060 0.8972 -1.9336 29 1 4.0194 0.7002 -3.6475 30 1 4.0106 2.3172 -2.9034 31 1 1.7757 1.2073 -4.6588 32 1 3.0572 2.3039 -5.2276 33 1 -2.0146 5.3343 -6.6987 34 1 0.8234 5.2431 -6.3302 35 1 1.9482 5.5033 -4.9754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222418413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:05 Heat of formation + Delta-G solvation = -44.188895 kcal Electronic energy + Delta-G solvation = -20562.924081 eV Core-core repulsion = 17166.438870 eV Total energy + Delta-G solvation = -3396.485211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36587 -37.93603 -36.93715 -36.16642 -34.79544 -33.32348 -31.64665 -30.82819 -29.65022 -28.27048 -25.23118 -24.12960 -23.31338 -21.56820 -20.96326 -19.28229 -17.76922 -16.74747 -16.34779 -16.09383 -15.53447 -15.20618 -14.62688 -14.58152 -14.37539 -13.88892 -13.58331 -13.33176 -13.02082 -12.61165 -12.54602 -12.31207 -12.26039 -12.04844 -11.73200 -11.51394 -11.18001 -11.12771 -10.92117 -10.80843 -10.75874 -10.37466 -9.90830 -9.46463 -9.31771 -9.21663 -8.61766 -8.36269 -8.17648 -6.31758 -4.37038 0.68242 1.19670 2.89858 2.99768 3.11669 3.18282 3.27862 3.34958 3.41390 3.83299 3.97639 4.20032 4.56170 4.67070 4.69084 4.93166 5.04139 5.08838 5.17951 5.26814 5.35604 5.57192 5.74559 5.97535 6.01044 6.05371 6.15255 6.19379 6.32780 6.43680 6.49583 6.86418 7.27710 7.29813 7.65950 7.73076 7.94207 8.32007 8.80864 9.30905 10.75582 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.004361 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.617602 B = 6418.357733 C = 8035.827089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.258 3.742 3 C -0.066 4.066 4 C -0.033 4.033 5 C -0.169 4.169 6 C -0.050 4.050 7 C -0.215 4.215 8 C 0.186 3.814 9 O -0.291 6.291 10 C 0.063 3.937 11 C 0.049 3.951 12 O -0.380 6.380 13 C 0.214 3.786 14 H 0.032 0.968 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.910 3.090 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.030 4.030 24 Cl -0.254 7.254 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.269 0.731 34 H 0.129 0.871 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.897 -8.715 8.716 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.057 4.057 3 C -0.070 4.070 4 C -0.054 4.054 5 C -0.187 4.187 6 C -0.069 4.069 7 C -0.234 4.234 8 C 0.136 3.864 9 O -0.202 6.202 10 C -0.012 4.012 11 C -0.029 4.029 12 O -0.300 6.300 13 C 0.157 3.843 14 H 0.050 0.950 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.737 3.263 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.092 4.092 24 Cl -0.229 7.229 25 H 0.154 0.846 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.915 -8.588 8.605 17.737 hybrid contribution -0.039 0.431 -0.158 0.461 sum 12.876 -8.157 8.448 17.427 Atomic orbital electron populations 1.81233 1.11954 1.08447 1.07124 1.25306 0.92322 0.93988 0.94096 1.15352 0.84855 1.10799 0.96030 1.21003 0.94240 0.94668 0.95452 1.20924 0.93502 1.04526 0.99752 1.21159 1.00204 0.93492 0.92030 1.21266 0.92310 1.07931 1.01893 1.19113 0.90562 0.90022 0.86705 1.86293 1.35866 1.73023 1.25044 1.23158 0.94334 0.97749 0.85948 1.22806 0.95151 0.90599 0.94317 1.87917 1.56359 1.44937 1.40751 1.20020 0.86025 0.91109 0.87116 0.94999 1.21128 1.01749 1.37434 0.94615 0.90801 1.24985 0.98581 0.95576 0.95011 1.69809 1.34184 1.44107 1.05008 0.86216 0.81438 0.78597 0.80046 1.19322 1.20629 1.20596 1.25964 0.87175 0.99916 0.96163 1.98590 1.59548 1.86418 1.78333 0.84564 0.85053 0.85175 0.84392 0.90849 0.90839 0.93343 0.89698 0.92148 0.85321 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.80 18.54 41.84 0.78 -7.03 16 2 C 0.26 4.19 14.87 -22.47 -0.33 3.86 16 3 C -0.07 -0.85 5.75 -106.69 -0.61 -1.47 16 4 C -0.03 -0.30 9.76 -39.18 -0.38 -0.68 16 5 C -0.17 -1.23 10.02 -39.63 -0.40 -1.63 16 6 C -0.05 -0.38 10.03 -39.53 -0.40 -0.77 16 7 C -0.22 -2.12 9.03 -39.48 -0.36 -2.48 16 8 C 0.19 2.48 6.69 -38.71 -0.26 2.22 16 9 O -0.29 -4.83 9.53 -23.68 -0.23 -5.06 16 10 C 0.06 0.90 5.12 37.16 0.19 1.09 16 11 C 0.05 0.89 5.92 37.16 0.22 1.11 16 12 O -0.38 -8.80 9.92 -40.08 -0.40 -9.20 16 13 C 0.21 5.37 2.38 -27.88 -0.07 5.30 16 14 H 0.03 0.86 7.79 -51.93 -0.40 0.46 16 15 C -0.51 -14.09 8.89 -34.44 -0.31 -14.40 16 16 H 0.07 2.11 7.81 -52.49 -0.41 1.70 16 17 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 18 N -0.89 -24.22 11.29 55.43 0.63 -23.59 16 19 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C -0.03 -0.68 6.17 37.16 0.23 -0.45 16 24 Cl -0.25 -5.01 26.09 -51.86 -1.35 -6.36 16 25 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 26 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 27 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 28 H 0.14 1.14 6.30 -52.49 -0.33 0.81 16 29 H 0.07 0.79 7.66 -51.93 -0.40 0.39 16 30 H 0.07 0.98 7.66 -51.93 -0.40 0.58 16 31 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 32 H 0.09 1.48 5.09 -51.93 -0.26 1.22 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.13 3.21 5.95 -51.93 -0.31 2.90 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -30.70 323.13 -7.05 -37.75 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.76 Total: -0.72 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.57 Total: -6.77 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 1.40 Total: -30.62 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.62 Total: -14.25 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -5.01 SS G_CDS: -1.35 Total: -6.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.70 -7.05 -37.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222418413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.438 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds