Wall clock time and date at job start Tue Mar 31 2020 07:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39722 * 120.19324 * 294.85760 * 3 2 1 5 5 C 1.37813 * 119.89925 * 180.27442 * 4 3 2 6 6 C 1.38515 * 120.29740 * 359.70075 * 5 4 3 7 7 C 1.38106 * 120.39097 * 0.02562 * 6 5 4 8 8 C 1.38637 * 120.09075 * 359.97438 * 7 6 5 9 9 O 1.35707 * 120.14809 * 180.02562 * 8 7 6 10 10 C 1.42904 * 116.99950 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47239 * 180.02562 * 10 9 8 12 12 O 1.42896 * 109.46849 * 64.99796 * 11 10 9 13 13 C 1.42905 * 113.99706 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.47103 * 30.00588 * 13 12 11 15 15 C 1.50701 * 109.46937 * 150.00224 * 13 12 11 16 16 H 1.08001 * 120.00213 * 359.97438 * 15 13 12 17 17 C 1.37880 * 119.99755 * 180.02562 * 15 13 12 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46996 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47191 * 119.99785 * 19 17 15 22 22 H 1.48501 * 109.46922 * 240.00237 * 19 17 15 23 23 C 1.52997 * 109.47264 * 270.00308 * 13 12 11 24 24 Cl 1.80299 * 109.47411 * 65.00033 * 23 13 12 25 25 H 1.08002 * 120.04405 * 359.97385 * 4 3 2 26 26 H 1.08001 * 119.85221 * 179.71762 * 5 4 3 27 27 H 1.08007 * 119.80354 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.95180 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.46984 * 60.00035 * 10 9 8 30 30 H 1.09002 * 109.47088 * 300.00219 * 10 9 8 31 31 H 1.09000 * 109.47055 * 304.99606 * 11 10 9 32 32 H 1.09000 * 109.46997 * 184.99730 * 11 10 9 33 33 H 0.97001 * 119.99839 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.46881 * 185.00370 * 23 13 12 35 35 H 1.09002 * 109.47196 * 304.99885 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 -0.5067 1.0958 5 6 4.6490 -0.4979 1.0918 6 6 5.3415 0.0062 0.0032 7 6 4.6590 0.5055 -1.0887 8 6 3.2727 0.5045 -1.1018 9 8 2.6009 0.9944 -2.1744 10 6 3.3860 1.4970 -3.2575 11 6 2.4610 2.0029 -4.3662 12 8 1.7139 3.1235 -3.8889 13 6 0.8145 3.6756 -4.8525 14 1 0.4758 2.8884 -5.5261 15 6 -0.3726 4.2767 -4.1452 16 1 -0.4344 4.2404 -3.0675 17 6 -1.3804 4.8721 -4.8738 18 7 -1.3054 4.9158 -6.1861 19 14 -2.8523 5.6166 -3.9970 20 1 -2.6978 5.4374 -2.5310 21 1 -2.9361 7.0651 -4.3130 22 1 -4.0933 4.9384 -4.4500 23 6 1.5324 4.7612 -5.6569 24 17 2.8631 4.0159 -6.6185 25 1 2.7350 -0.9007 1.9467 26 1 5.1916 -0.8861 1.9411 27 1 6.4215 0.0088 0.0083 28 1 5.2060 0.8972 -1.9336 29 1 4.0194 0.7002 -3.6475 30 1 4.0106 2.3172 -2.9034 31 1 1.7757 1.2073 -4.6588 32 1 3.0572 2.3039 -5.2276 33 1 -2.0146 5.3343 -6.6987 34 1 0.8234 5.2431 -6.3302 35 1 1.9482 5.5033 -4.9754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222418413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:05 Heat of formation + Delta-G solvation = -62.302379 kcal Electronic energy + Delta-G solvation = -20563.709541 eV Core-core repulsion = 17166.438870 eV Total energy + Delta-G solvation = -3397.270670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28904 -39.24666 -38.36592 -37.39034 -36.52637 -35.30214 -32.60867 -32.00324 -30.89151 -29.78208 -27.26374 -25.02240 -24.39404 -22.95335 -22.51147 -20.23128 -18.77349 -18.70104 -17.85651 -17.10362 -16.98504 -16.45320 -16.05347 -15.80561 -15.58088 -15.27259 -14.86925 -14.72011 -14.18182 -14.10532 -13.98326 -13.81393 -13.68546 -13.30611 -13.05341 -12.91331 -12.69705 -12.65908 -12.43688 -12.28209 -11.97303 -11.95520 -11.57936 -11.29645 -11.23093 -10.63282 -9.98152 -9.94835 -9.21893 -8.37650 -6.51326 -0.13352 0.45910 1.33006 1.36792 1.49703 1.58129 1.67205 1.99651 2.12959 2.29057 2.91205 2.92570 2.98326 3.08314 3.83276 3.94868 4.12110 4.16654 4.27018 4.35464 4.42865 4.47951 4.51976 4.53243 4.69090 4.74019 4.92761 4.93737 5.26470 5.33432 5.38300 5.53077 5.53835 5.82000 5.92249 6.31711 6.41923 6.54670 6.76319 7.21553 8.69128 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.004361 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.617602 B = 6418.357733 C = 8035.827089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.278 3.722 3 C -0.100 4.100 4 C -0.028 4.028 5 C -0.154 4.154 6 C -0.035 4.035 7 C -0.216 4.216 8 C 0.158 3.842 9 O -0.334 6.334 10 C 0.068 3.932 11 C 0.041 3.959 12 O -0.398 6.398 13 C 0.220 3.780 14 H 0.004 0.996 15 C -0.543 4.543 16 H 0.052 0.948 17 C 0.026 3.974 18 N -0.908 5.908 19 Si 0.968 3.032 20 H -0.277 1.277 21 H -0.264 1.264 22 H -0.275 1.275 23 C -0.019 4.019 24 Cl -0.223 7.223 25 H 0.156 0.844 26 H 0.171 0.829 27 H 0.170 0.830 28 H 0.155 0.845 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.095 0.905 33 H 0.274 0.726 34 H 0.110 0.890 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.944 -9.129 9.825 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.036 4.036 3 C -0.104 4.104 4 C -0.048 4.048 5 C -0.172 4.172 6 C -0.053 4.053 7 C -0.235 4.235 8 C 0.109 3.891 9 O -0.248 6.248 10 C -0.006 4.006 11 C -0.036 4.036 12 O -0.318 6.318 13 C 0.163 3.837 14 H 0.022 0.978 15 C -0.581 4.581 16 H 0.070 0.930 17 C -0.174 4.174 18 N -0.546 5.546 19 Si 0.792 3.208 20 H -0.202 1.202 21 H -0.189 1.189 22 H -0.200 1.200 23 C -0.082 4.082 24 Cl -0.197 7.197 25 H 0.174 0.826 26 H 0.188 0.812 27 H 0.188 0.812 28 H 0.173 0.827 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.988 -9.012 9.708 20.762 hybrid contribution -0.774 0.439 -0.469 1.006 sum 15.214 -8.572 9.239 19.756 Atomic orbital electron populations 1.81215 1.13931 1.11290 1.09436 1.26068 0.93228 0.92085 0.92187 1.15731 0.83056 1.13658 0.97979 1.21322 0.95346 0.93568 0.94573 1.21423 0.92539 1.02534 1.00666 1.21682 1.02150 0.90868 0.90628 1.21528 0.90644 1.07826 1.03463 1.19413 0.92088 0.91545 0.86011 1.86203 1.37813 1.74234 1.26501 1.23155 0.93150 0.99425 0.84837 1.23043 0.95052 0.88693 0.96772 1.87877 1.56446 1.46575 1.40927 1.19734 0.86351 0.90725 0.86912 0.97807 1.21294 1.03951 1.39004 0.93863 0.92967 1.25656 1.00605 0.95494 0.95683 1.69879 1.34934 1.44038 1.05799 0.85350 0.78389 0.78664 0.78386 1.20218 1.18852 1.20016 1.25454 0.87821 0.99056 0.95891 1.98582 1.57658 1.86015 1.77408 0.82648 0.81170 0.81226 0.82700 0.86783 0.89656 0.94952 0.88762 0.91595 0.87166 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -19.57 18.54 19.00 0.35 -19.21 16 2 C 0.28 9.52 14.87 88.33 1.31 10.84 16 3 C -0.10 -2.55 5.75 -21.21 -0.12 -2.67 16 4 C -0.03 -0.44 9.76 22.53 0.22 -0.22 16 5 C -0.15 -1.50 10.02 22.24 0.22 -1.28 16 6 C -0.03 -0.35 10.03 22.30 0.22 -0.13 16 7 C -0.22 -3.58 9.03 22.33 0.20 -3.38 16 8 C 0.16 4.11 6.69 22.83 0.15 4.26 16 9 O -0.33 -11.34 9.53 -85.63 -0.82 -12.16 16 10 C 0.07 1.91 5.12 71.98 0.37 2.28 16 11 C 0.04 1.53 5.92 71.98 0.43 1.96 16 12 O -0.40 -19.13 9.92 -144.34 -1.43 -20.56 16 13 C 0.22 11.47 2.38 29.85 0.07 11.54 16 14 H 0.00 0.24 7.79 -2.39 -0.02 0.22 16 15 C -0.54 -31.21 8.89 25.60 0.23 -30.98 16 16 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 17 C 0.03 1.44 5.29 84.66 0.45 1.89 16 18 N -0.91 -50.00 11.29 21.45 0.24 -49.76 16 19 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 23 C -0.02 -0.90 6.17 71.98 0.44 -0.46 16 24 Cl -0.22 -8.61 26.09 -2.72 -0.07 -8.68 16 25 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 26 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 27 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 28 H 0.16 1.96 6.30 -2.91 -0.02 1.95 16 29 H 0.11 2.18 7.66 -2.39 -0.02 2.17 16 30 H 0.09 2.14 7.66 -2.39 -0.02 2.12 16 31 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 32 H 0.09 3.26 5.09 -2.39 -0.01 3.25 16 33 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.11 5.60 5.95 -2.38 -0.01 5.59 16 35 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -71.46 323.13 5.62 -65.84 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.12 Total: 4.87 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 4.20 Total: -6.35 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: 0.59 Total: -68.97 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -2.25 Total: -32.72 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -8.61 SS G_CDS: -0.07 Total: -8.68 kcal Total: -71.46 5.62 -65.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222418413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.540 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds