Wall clock time and date at job start Tue Mar 31 2020 07:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38716 * 119.76175 * 2 1 4 4 C 1.37681 * 120.42128 * 179.97438 * 3 2 1 5 5 C 1.39583 * 119.73318 * 0.04193 * 4 3 2 6 6 N 1.36063 * 133.80536 * 180.26291 * 5 4 3 7 7 C 1.29907 * 108.79696 * 180.10058 * 6 5 4 8 8 C 1.50703 * 124.85419 * 179.89275 * 7 6 5 9 9 O 1.42901 * 109.46514 * 89.70224 * 8 7 6 10 10 C 1.42907 * 113.99675 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47242 * 29.99468 * 10 9 8 12 12 C 1.50697 * 109.46922 * 149.99595 * 10 9 8 13 13 H 1.07997 * 120.00509 * 5.43312 * 12 10 9 14 14 C 1.37884 * 119.99425 * 185.14855 * 12 10 9 15 15 N 1.31507 * 120.00111 * 355.60148 * 14 12 10 16 16 Si 1.86803 * 119.99779 * 175.60165 * 14 12 10 17 17 H 1.48501 * 109.47226 * 95.00059 * 16 14 12 18 18 H 1.48497 * 109.46975 * 215.00344 * 16 14 12 19 19 H 1.48504 * 109.47152 * 334.99894 * 16 14 12 20 20 C 1.53003 * 109.46698 * 269.99551 * 10 9 8 21 21 Cl 1.80300 * 109.47069 * 66.27245 * 20 10 9 22 22 O 1.34235 * 110.28837 * 359.63266 * 7 6 5 23 23 C 1.35113 * 108.16317 * 0.22857 * 22 7 6 24 24 C 1.37913 * 119.76421 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.46769 * 269.97616 * 1 2 3 26 26 H 1.08988 * 109.47102 * 29.97777 * 1 2 3 27 27 H 1.09005 * 109.46860 * 149.98106 * 1 2 3 28 28 H 1.08000 * 119.79124 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.13235 * 180.02562 * 4 3 2 30 30 H 1.08993 * 109.47392 * 329.69879 * 8 7 6 31 31 H 1.09001 * 109.47118 * 209.69931 * 8 7 6 32 32 H 0.97004 * 120.00236 * 179.97438 * 15 14 12 33 33 H 1.08995 * 109.46824 * 186.27267 * 20 10 9 34 34 H 1.08997 * 109.46961 * 306.27430 * 20 10 9 35 35 H 1.08002 * 120.05779 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2042 0.0000 4 6 3.5723 1.2200 0.0005 5 6 4.2785 0.0160 0.0002 6 7 5.6020 -0.2996 0.0050 7 6 5.7239 -1.5929 -0.0003 8 6 7.0360 -2.3343 0.0003 9 8 7.4501 -2.5684 1.3478 10 6 8.6907 -3.2687 1.4612 11 1 9.3202 -3.0340 0.6030 12 6 9.3908 -2.8483 2.7277 13 1 8.8966 -2.1870 3.4240 14 6 10.6601 -3.3128 3.0004 15 7 11.2255 -4.1896 2.1998 16 14 11.5765 -2.6965 4.5070 17 1 11.3719 -3.6434 5.6325 18 1 13.0260 -2.5992 4.1992 19 1 11.0601 -1.3570 4.8869 20 6 8.4241 -4.7748 1.5016 21 17 7.7552 -5.3094 -0.0851 22 8 4.5141 -2.1745 -0.0006 23 6 3.5783 -1.1999 -0.0003 24 6 2.1917 -1.1972 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6483 2.1353 -0.0004 29 1 4.1037 2.1603 0.0009 30 1 7.7903 -1.7384 -0.5134 31 1 6.9146 -3.2880 -0.5134 32 1 12.1186 -4.5161 2.3914 33 1 9.3565 -5.3035 1.6995 34 1 7.7063 -4.9957 2.2915 35 1 1.6488 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222898469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:02 Heat of formation + Delta-G solvation = -26.796648 kcal Electronic energy + Delta-G solvation = -20591.752986 eV Core-core repulsion = 17196.021959 eV Total energy + Delta-G solvation = -3395.731026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.08537 -38.44079 -37.39494 -34.90955 -34.69353 -33.38157 -31.93355 -30.77016 -29.61040 -27.83677 -25.54904 -25.20705 -23.12286 -21.83697 -21.15186 -21.03572 -17.86832 -17.24895 -16.79423 -16.66017 -15.77577 -15.43296 -14.79816 -14.63226 -14.30163 -14.05456 -13.83505 -13.60447 -13.11937 -12.56299 -12.44433 -12.31668 -12.11912 -12.09774 -11.66887 -11.44651 -11.29536 -11.12969 -11.00130 -10.88507 -10.45804 -10.32486 -10.10818 -9.51239 -9.39447 -8.83262 -8.73373 -8.35489 -8.27177 -6.38632 -4.44844 0.66510 1.19782 2.40899 2.64076 3.15349 3.24144 3.28727 3.37462 3.58009 3.87165 4.19058 4.51622 4.61834 4.81924 4.94117 4.97899 5.04076 5.21608 5.33328 5.37972 5.38171 5.66262 5.74632 5.76346 5.87490 6.02863 6.24597 6.25534 6.30292 6.33216 6.35245 6.61992 6.72798 7.17333 7.56180 7.80085 7.82553 8.12662 8.71026 9.23082 10.68941 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.003642 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.410554 B = 7685.238502 C = 8569.940678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.123 4.123 4 C -0.058 4.058 5 C 0.019 3.981 6 N -0.469 5.469 7 C 0.276 3.724 8 C 0.137 3.863 9 O -0.378 6.378 10 C 0.216 3.784 11 H 0.041 0.959 12 C -0.517 4.517 13 H 0.075 0.925 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.913 3.087 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.031 4.031 21 Cl -0.250 7.250 22 O -0.206 6.206 23 C 0.010 3.990 24 C -0.094 4.094 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.271 0.729 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.841 5.601 -5.217 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.069 4.069 3 C -0.143 4.143 4 C -0.077 4.077 5 C -0.093 4.093 6 N -0.200 5.200 7 C 0.064 3.936 8 C 0.059 3.941 9 O -0.297 6.297 10 C 0.160 3.840 11 H 0.059 0.941 12 C -0.555 4.555 13 H 0.093 0.907 14 C -0.140 4.140 15 N -0.526 5.526 16 Si 0.740 3.260 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.093 4.093 21 Cl -0.225 7.225 22 O -0.097 6.097 23 C -0.041 4.041 24 C -0.113 4.113 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.303 5.911 -5.178 17.203 hybrid contribution 0.199 -0.471 0.541 0.744 sum -15.104 5.440 -4.637 16.710 Atomic orbital electron populations 1.20767 0.90058 1.03099 1.02709 1.19664 0.96263 0.91779 0.99240 1.20868 0.93170 0.97849 1.02389 1.20290 0.93164 0.95693 0.98510 1.20000 0.89133 0.94740 1.05403 1.70721 1.16953 1.12488 1.19821 1.26501 0.86513 0.87186 0.93387 1.21090 0.85040 0.98797 0.89206 1.87953 1.42579 1.78237 1.20907 1.20156 0.79608 0.85101 0.99152 0.94111 1.21032 0.99489 1.29832 1.05108 0.90699 1.24997 0.96901 0.94496 0.97626 1.69839 1.15983 1.29223 1.37525 0.86212 0.78681 0.79548 0.81562 1.20349 1.20762 1.19346 1.25969 1.01510 1.01020 0.80836 1.98607 1.89156 1.92224 1.42491 1.84557 1.15437 1.35948 1.73741 1.20348 0.91890 0.87024 1.04803 1.19668 0.87920 0.99118 1.04566 0.90761 0.91085 0.91263 0.84770 0.84648 0.89245 0.88867 0.91956 0.85518 0.90672 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.00 36.01 0.36 -0.37 16 2 C -0.07 -0.71 5.88 -104.56 -0.62 -1.33 16 3 C -0.12 -1.28 9.67 -39.61 -0.38 -1.66 16 4 C -0.06 -0.76 10.10 -39.28 -0.40 -1.16 16 5 C 0.02 0.33 7.24 -84.71 -0.61 -0.29 16 6 N -0.47 -9.19 11.34 -8.70 -0.10 -9.29 16 7 C 0.28 5.38 7.87 -13.09 -0.10 5.28 16 8 C 0.14 2.68 6.17 36.01 0.22 2.91 16 9 O -0.38 -8.79 9.94 -35.23 -0.35 -9.14 16 10 C 0.22 5.24 2.31 -27.88 -0.06 5.18 16 11 H 0.04 1.04 7.79 -51.93 -0.40 0.63 16 12 C -0.52 -13.64 8.82 -34.44 -0.30 -13.94 16 13 H 0.07 2.02 7.82 -52.49 -0.41 1.61 16 14 C 0.06 1.62 5.34 -17.82 -0.10 1.53 16 15 N -0.89 -23.25 11.51 55.43 0.64 -22.61 16 16 Si 0.91 20.18 29.54 -169.99 -5.02 15.16 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 C -0.03 -0.69 6.21 37.16 0.23 -0.46 16 21 Cl -0.25 -4.98 26.16 -51.86 -1.36 -6.33 16 22 O -0.21 -3.84 10.77 3.61 0.04 -3.81 16 23 C 0.01 0.17 7.43 -38.65 -0.29 -0.12 16 24 C -0.09 -1.19 9.70 -39.54 -0.38 -1.58 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.37 8.08 -51.94 -0.42 -0.05 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.09 1.66 8.08 -51.93 -0.42 1.24 16 31 H 0.09 1.75 5.15 -51.93 -0.27 1.49 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.13 3.06 6.20 -51.93 -0.32 2.74 16 34 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -28.65 317.28 -7.71 -36.36 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -3.91 Total: 0.89 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.43 Total: -6.02 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.54 Total: -31.89 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.31 Total: -12.95 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 17 Polarization: -4.98 SS G_CDS: -1.36 Total: -6.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.65 -7.71 -36.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222898469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.567 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds