Wall clock time and date at job start Tue Mar 31 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38716 * 119.76175 * 2 1 4 4 C 1.37681 * 120.42128 * 179.97438 * 3 2 1 5 5 C 1.39583 * 119.73318 * 0.04193 * 4 3 2 6 6 N 1.36063 * 133.80536 * 180.26291 * 5 4 3 7 7 C 1.29907 * 108.79696 * 180.10058 * 6 5 4 8 8 C 1.50703 * 124.85419 * 179.89275 * 7 6 5 9 9 O 1.42901 * 109.46514 * 89.70224 * 8 7 6 10 10 C 1.42907 * 113.99675 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47242 * 29.99468 * 10 9 8 12 12 C 1.50697 * 109.46922 * 149.99595 * 10 9 8 13 13 H 1.07997 * 120.00509 * 5.43312 * 12 10 9 14 14 C 1.37884 * 119.99425 * 185.14855 * 12 10 9 15 15 N 1.31507 * 120.00111 * 355.60148 * 14 12 10 16 16 Si 1.86803 * 119.99779 * 175.60165 * 14 12 10 17 17 H 1.48501 * 109.47226 * 95.00059 * 16 14 12 18 18 H 1.48497 * 109.46975 * 215.00344 * 16 14 12 19 19 H 1.48504 * 109.47152 * 334.99894 * 16 14 12 20 20 C 1.53003 * 109.46698 * 269.99551 * 10 9 8 21 21 Cl 1.80300 * 109.47069 * 66.27245 * 20 10 9 22 22 O 1.34235 * 110.28837 * 359.63266 * 7 6 5 23 23 C 1.35113 * 108.16317 * 0.22857 * 22 7 6 24 24 C 1.37913 * 119.76421 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.46769 * 269.97616 * 1 2 3 26 26 H 1.08988 * 109.47102 * 29.97777 * 1 2 3 27 27 H 1.09005 * 109.46860 * 149.98106 * 1 2 3 28 28 H 1.08000 * 119.79124 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.13235 * 180.02562 * 4 3 2 30 30 H 1.08993 * 109.47392 * 329.69879 * 8 7 6 31 31 H 1.09001 * 109.47118 * 209.69931 * 8 7 6 32 32 H 0.97004 * 120.00236 * 179.97438 * 15 14 12 33 33 H 1.08995 * 109.46824 * 186.27267 * 20 10 9 34 34 H 1.08997 * 109.46961 * 306.27430 * 20 10 9 35 35 H 1.08002 * 120.05779 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2042 0.0000 4 6 3.5723 1.2200 0.0005 5 6 4.2785 0.0160 0.0002 6 7 5.6020 -0.2996 0.0050 7 6 5.7239 -1.5929 -0.0003 8 6 7.0360 -2.3343 0.0003 9 8 7.4501 -2.5684 1.3478 10 6 8.6907 -3.2687 1.4612 11 1 9.3202 -3.0340 0.6030 12 6 9.3908 -2.8483 2.7277 13 1 8.8966 -2.1870 3.4240 14 6 10.6601 -3.3128 3.0004 15 7 11.2255 -4.1896 2.1998 16 14 11.5765 -2.6965 4.5070 17 1 11.3719 -3.6434 5.6325 18 1 13.0260 -2.5992 4.1992 19 1 11.0601 -1.3570 4.8869 20 6 8.4241 -4.7748 1.5016 21 17 7.7552 -5.3094 -0.0851 22 8 4.5141 -2.1745 -0.0006 23 6 3.5783 -1.1999 -0.0003 24 6 2.1917 -1.1972 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6483 2.1353 -0.0004 29 1 4.1037 2.1603 0.0009 30 1 7.7903 -1.7384 -0.5134 31 1 6.9146 -3.2880 -0.5134 32 1 12.1186 -4.5161 2.3914 33 1 9.3565 -5.3035 1.6995 34 1 7.7063 -4.9957 2.2915 35 1 1.6488 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222898469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:01 Heat of formation + Delta-G solvation = -44.966682 kcal Electronic energy + Delta-G solvation = -20592.540897 eV Core-core repulsion = 17196.021959 eV Total energy + Delta-G solvation = -3396.518938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.35258 -39.52951 -39.08221 -36.61143 -36.02446 -35.27919 -33.02356 -31.88707 -31.23839 -29.20503 -27.25181 -26.51719 -24.26653 -22.99569 -22.93696 -22.37146 -19.08284 -18.77845 -18.30727 -18.13258 -17.42708 -16.81557 -16.31138 -16.24653 -15.70026 -15.17443 -14.91104 -14.65208 -14.46691 -14.22977 -13.96167 -13.45685 -13.20792 -13.13794 -13.06949 -12.98784 -12.93675 -12.70088 -12.45409 -12.26474 -12.15610 -11.85568 -11.59210 -11.34948 -11.24583 -10.65878 -10.11950 -9.87003 -9.38486 -8.35227 -6.49615 -0.47065 0.16393 1.11589 1.37779 1.39734 1.43599 1.53784 1.59640 2.32519 2.51972 2.59941 2.98457 3.30337 3.47194 3.78857 3.89687 4.02786 4.13607 4.22557 4.27300 4.36061 4.40229 4.48551 4.74804 4.79152 4.83262 4.90023 4.94644 5.11518 5.20127 5.27908 5.29115 5.44133 5.53810 5.70968 5.88032 6.27945 6.47744 6.69340 7.22410 8.71911 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.003642 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.410554 B = 7685.238502 C = 8569.940678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.049 4.049 3 C -0.108 4.108 4 C -0.067 4.067 5 C -0.021 4.021 6 N -0.487 5.487 7 C 0.248 3.752 8 C 0.142 3.858 9 O -0.396 6.396 10 C 0.221 3.779 11 H 0.024 0.976 12 C -0.546 4.546 13 H 0.060 0.940 14 C 0.028 3.972 15 N -0.906 5.906 16 Si 0.974 3.026 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.273 1.273 20 C -0.021 4.021 21 Cl -0.226 7.226 22 O -0.220 6.220 23 C -0.014 4.014 24 C -0.108 4.108 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.179 0.821 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.275 0.725 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.292 6.788 -5.088 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.050 4.050 3 C -0.127 4.127 4 C -0.086 4.086 5 C -0.133 4.133 6 N -0.219 5.219 7 C 0.036 3.964 8 C 0.064 3.936 9 O -0.316 6.316 10 C 0.165 3.835 11 H 0.041 0.959 12 C -0.584 4.584 13 H 0.078 0.922 14 C -0.174 4.174 15 N -0.543 5.543 16 Si 0.798 3.202 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.197 1.197 20 C -0.084 4.084 21 Cl -0.200 7.200 22 O -0.111 6.111 23 C -0.064 4.064 24 C -0.127 4.127 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.196 0.804 29 H 0.167 0.833 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.776 7.090 -5.065 19.796 hybrid contribution 0.713 -0.730 0.412 1.100 sum -17.063 6.359 -4.653 18.795 Atomic orbital electron populations 1.20913 0.86643 1.04889 1.04097 1.20270 0.98464 0.90750 0.95473 1.21425 0.92035 0.99756 0.99454 1.20688 0.94526 0.94930 0.98451 1.20461 0.88305 0.96535 1.07991 1.70596 1.19102 1.12665 1.19506 1.26196 0.86702 0.87392 0.96083 1.21055 0.85686 0.99307 0.87509 1.87901 1.42023 1.78284 1.23341 1.19946 0.79745 0.86148 0.97699 0.95862 1.21211 1.00611 1.30612 1.05926 0.92216 1.25698 0.97223 0.94329 1.00140 1.69911 1.16325 1.29466 1.38648 0.85291 0.77603 0.78820 0.78504 1.19425 1.19893 1.19739 1.25553 1.00964 0.99734 0.82169 1.98601 1.88761 1.91909 1.40745 1.84481 1.15583 1.36841 1.74236 1.20956 0.93010 0.86431 1.05958 1.20137 0.86369 1.01240 1.04968 0.89289 0.88700 0.90218 0.80364 0.83265 0.88846 0.88280 0.91508 0.86980 0.90508 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.00 71.24 0.71 -0.19 16 2 C -0.05 -0.84 5.88 -19.83 -0.12 -0.96 16 3 C -0.11 -1.83 9.67 22.25 0.22 -1.62 16 4 C -0.07 -1.68 10.10 22.46 0.23 -1.45 16 5 C -0.02 -0.75 7.24 39.32 0.28 -0.46 16 6 N -0.49 -19.96 11.34 -296.26 -3.36 -23.32 16 7 C 0.25 10.20 7.87 88.39 0.70 10.90 16 8 C 0.14 5.87 6.17 71.24 0.44 6.31 16 9 O -0.40 -19.32 9.94 -148.98 -1.48 -20.81 16 10 C 0.22 11.14 2.31 29.85 0.07 11.21 16 11 H 0.02 1.25 7.79 -2.39 -0.02 1.23 16 12 C -0.55 -29.74 8.82 25.60 0.23 -29.51 16 13 H 0.06 3.35 7.82 -2.91 -0.02 3.33 16 14 C 0.03 1.44 5.34 84.66 0.45 1.89 16 15 N -0.91 -47.90 11.51 21.45 0.25 -47.66 16 16 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 C -0.02 -0.98 6.21 71.98 0.45 -0.54 16 21 Cl -0.23 -9.06 26.16 -2.72 -0.07 -9.14 16 22 O -0.22 -8.60 10.77 -9.98 -0.11 -8.71 16 23 C -0.01 -0.46 7.43 22.88 0.17 -0.29 16 24 C -0.11 -2.58 9.70 22.29 0.22 -2.37 16 25 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 27 H 0.08 0.57 8.08 -2.38 -0.02 0.55 16 28 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.09 3.69 8.08 -2.39 -0.02 3.67 16 31 H 0.10 3.89 5.15 -2.39 -0.01 3.87 16 32 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.11 5.53 6.20 -2.39 -0.01 5.52 16 34 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 35 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -64.47 317.28 2.41 -62.07 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.11 Total: 11.06 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.04 Total: -7.07 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -3.11 Total: -70.97 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.59 Total: -29.51 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -9.06 SS G_CDS: -0.07 Total: -9.14 kcal Total: -64.47 2.41 -62.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222898469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.101 kcal (2) G-P(sol) polarization free energy of solvation -64.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds